Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0015265

Physical Location & Seq

Genomic Coordinates Reverse (-)

2621431 .. 2622231

Gene Structure 801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G037800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGAAGACCCTCGTAGAGGAAAGGATCTACAGAAGCAAGGAATGGAAGAGAAGGGAAGCGAAGAAGTGCGTTATCGGGGAGTCCGAAGGAGGCCATGGGGGAAGTTTGCTTCTGAGATAAGAGACCCTTCAAGGCAAGGTGCTCGTCTGTGGCTTGGCACATTTGATACGGCTGAAGAAGCTGCAAGGGCTTATGACAGAGCTGCTTTTAATTTAAGGGGTCATCTTGCCATACTCAACTTTCCAAATGAGTATTATTCTCAAGTTATGGGCTCTCCTCCTCATCCTCCTAGATTCTCATCATCATTTTCTTCTTCTTCTTCTTCTTCATCTTCTTCTTCTTCTTCTTCTTCTGCTGCTGCTGCTGCTGCTGCTCCTGGTGGAAGTTCATCTACTGGACAAGGAAGGCAAGTCTTTGAGATTGAGTATTTGGATGACCATGTGTTGGAGGACCTTCTTGATTCTCAAGAGGAGAAAAACAAACGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

164

Amino Acids

18.01

Weight (kDa)

6.85

Isoelectric Point (pI)

82.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23230
fragaria_vesca	FvH4_4g03460
malus_domestica	MD13G1212900.v1.1 MD16G1216500.v1.1
prunus_persica	Prupe.1G037800_v2.0.a1
pyrus_communis	pycom13g18470 pycom16g18110
rosa_chinensis	RchiOBHm_Chr4g0392461
rosa_laevigata	RLG00000009804
rosa_multiflora	Rmu_sc0004216.1_g000004 Rmu_sc0041365.1_g000001
rosa_roxburghii	Rroxscaffold_5G00337720
rosa_rugosa	Rorug03G0339000
rosa_samantha	Rh4BG038100 Rh4DG040100
rosa_wichuraiana	Rw4G003370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	445
AclWI	GGATC	1 cut(s)	33
AcuI	CTGAAG	1 cut(s)	195
AfiI	CCNNNNNNNGG	2 cut(s)	17, 445
AgsI	TTSAA	1 cut(s)	132
AjnI	CCWGG	1 cut(s)	376
AluBI	AGCT	2 cut(s)	182, 203
AluI	AGCT	2 cut(s)	182, 203
Alw21I	GWGCWC	1 cut(s)	145
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	1 cut(s)	33
AoxI	GGCC	1 cut(s)	92
ApeKI	GCWGC	8 cut(s)	182, 203, 356, 359, 362, 365, 368, 371
AspS9I	GGNCC	1 cut(s)	451
AvaII	GGWCC	1 cut(s)	451
BanII	GRGCYC	1 cut(s)	275
BarI	GAAGNNNNNNTAC	2 cut(s)	376, 408
BbsI	GAAGAC	1 cut(s)	12
Bbv12I	GWGCWC	1 cut(s)	145
BbvI	GCAGC	8 cut(s)	169, 190, 343, 346, 349, 352, 355, 358
BceAI	ACGGC	1 cut(s)	186
BcgI	CGANNNNNNTGC	2 cut(s)	125, 159
BciT130I	CCWGG	1 cut(s)	378
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	1 cut(s)	291
BfmI	CTRYAG	1 cut(s)	29
BisI	GCNGC	8 cut(s)	183, 204, 357, 360, 363, 366, 369, 372
BlsI	GCNGC	8 cut(s)	184, 205, 358, 361, 364, 367, 370, 373
Bme1390I	CCNGG	1 cut(s)	378
Bme18I	GGWCC	1 cut(s)	451
BmgT120I	GGNCC	1 cut(s)	451
BmrFI	CCNGG	1 cut(s)	378
BpiI	GAAGAC	1 cut(s)	12
BpuEI	CTTGAG	2 cut(s)	246, 450
BsaBI	GATNNNNATC	1 cut(s)	298
BsaI	GGTCTC	1 cut(s)	117
BsaJI	CCNNGG	1 cut(s)	95
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 445
Bse1I	ACTGG	1 cut(s)	400
Bse8I	GATNNNNATC	1 cut(s)	298
BseBI	CCWGG	1 cut(s)	378
BseDI	CCNNGG	1 cut(s)	95
BseGI	GGATG	2 cut(s)	283, 439
BseJI	GATNNNNATC	1 cut(s)	298
BseLI	CCNNNNNNNGG	2 cut(s)	17, 445
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	1 cut(s)	400
BseRI	GAGGAG	3 cut(s)	267, 270, 485
BseXI	GCAGC	8 cut(s)	169, 190, 343, 346, 349, 352, 355, 358
BshFI	GGCC	1 cut(s)	94
BsiHKAI	GWGCWC	1 cut(s)	145
BslI	CCNNNNNNNGG	2 cut(s)	17, 445
BsmAI	GTCTC	1 cut(s)	117
BsnI	GGCC	1 cut(s)	94
Bso31I	GGTCTC	1 cut(s)	117
Bsp1286I	GDGCHC	2 cut(s)	145, 275
Bsp143I	GATC	1 cut(s)	25
Bsp19I	CCATGG	1 cut(s)	95
BspANI	GGCC	1 cut(s)	94
BspCNI	CTCAG	1 cut(s)	106
BspPI	GGATC	1 cut(s)	33
BspTNI	GGTCTC	1 cut(s)	117
BsrI	ACTGG	1 cut(s)	400
BssECI	CCNNGG	1 cut(s)	95
BssMI	GATC	1 cut(s)	25
BssT1I	CCWWGG	1 cut(s)	95
Bst2UI	CCWGG	1 cut(s)	378
Bst6I	CTCTTC	1 cut(s)	42
BstDEI	CTNAG	1 cut(s)	114
BstDSI	CCRYGG	1 cut(s)	95
BstENI	CCTNNNNNAGG	1 cut(s)	15
BstF5I	GGATG	2 cut(s)	283, 439
BstKTI	GATC	1 cut(s)	28
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	1 cut(s)	25
BstMWI	GCNNNNNNNGC	6 cut(s)	179, 188, 362, 365, 368, 371
BstNI	CCWGG	1 cut(s)	378
BstSCI	CCNGG	1 cut(s)	376
BstSFI	CTRYAG	1 cut(s)	29
BstV1I	GCAGC	8 cut(s)	169, 190, 343, 346, 349, 352, 355, 358
BstV2I	GAAGAC	1 cut(s)	12
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
BsuRI	GGCC	1 cut(s)	94
BtgI	CCRYGG	1 cut(s)	95
BtsCI	GGATG	2 cut(s)	283, 439
Cfr13I	GGNCC	1 cut(s)	451
CviAII	CATG	2 cut(s)	96, 440
CviJI	RGCY	7 cut(s)	94, 154, 173, 182, 191, 203, 273
CviKI_1	RGCY	7 cut(s)	94, 154, 173, 182, 191, 203, 273
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	1 cut(s)	27
DpnII	GATC	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
Eco130I	CCWWGG	1 cut(s)	95
Eco24I	GRGCYC	1 cut(s)	275
Eco31I	GGTCTC	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	451
Eco57I	CTGAAG	1 cut(s)	195
EcoNI	CCTNNNNNAGG	1 cut(s)	15
EcoO109I	RGGNCCY	1 cut(s)	451
EcoRII	CCWGG	1 cut(s)	376
EcoT14I	CCWWGG	1 cut(s)	95
EcoT38I	GRGCYC	1 cut(s)	275
ErhI	CCWWGG	1 cut(s)	95
FaeI	CATG	2 cut(s)	99, 443
FaiI	YATR	5 cut(s)	97, 195, 233, 269, 441
FalI	AAGNNNNNCTT	2 cut(s)	112, 144
FatI	CATG	2 cut(s)	95, 439
Fnu4HI	GCNGC	8 cut(s)	183, 204, 357, 360, 363, 366, 369, 372
FokI	GGATG	2 cut(s)	270, 446
FriOI	GRGCYC	1 cut(s)	275
Fsp4HI	GCNGC	8 cut(s)	183, 204, 357, 360, 363, 366, 369, 372
FspBI	CTAG	1 cut(s)	291
GluI	GCNGC	8 cut(s)	183, 204, 357, 360, 363, 366, 369, 372
HaeIII	GGCC	1 cut(s)	94
Hin1II	CATG	2 cut(s)	99, 443
HinfI	GANTC	3 cut(s)	81, 294, 461
Hpy188I	TCNGA	2 cut(s)	86, 115
Hpy188III	TCNNGA	2 cut(s)	458, 467
HpyAV	CCTTC	5 cut(s)	46, 81, 138, 399, 464
HpyCH4V	TGCA	1 cut(s)	185
HpyF10VI	GCNNNNNNNGC	6 cut(s)	179, 188, 362, 365, 368, 371
HpyF3I	CTNAG	1 cut(s)	114
Hsp92II	CATG	2 cut(s)	99, 443
Kzo9I	GATC	1 cut(s)	25
LmnI	GCTCC	1 cut(s)	379
LpnPI	CCDG	3 cut(s)	363, 381, 390
Lsp1109I	GCAGC	8 cut(s)	169, 190, 343, 346, 349, 352, 355, 358
MaeI	CTAG	1 cut(s)	291
MalI	GATC	1 cut(s)	27
MboI	GATC	1 cut(s)	25
MflI	RGATCY	1 cut(s)	25
MhlI	GDGCHC	2 cut(s)	145, 275
MluCI	AATT	1 cut(s)	211
MlyI	GAGTC	1 cut(s)	90
MmeI	TCCRAC	1 cut(s)	426
MnlI	CCTC	8 cut(s)	11, 21, 84, 288, 291, 297, 442, 463
MseI	TTAA	2 cut(s)	210, 215
MspR9I	CCNGG	1 cut(s)	378
MvaI	CCWGG	1 cut(s)	378
MwoI	GCNNNNNNNGC	6 cut(s)	179, 188, 362, 365, 368, 371
NcoI	CCATGG	1 cut(s)	95
NdeII	GATC	1 cut(s)	25
NlaIII	CATG	2 cut(s)	99, 443
PcsI	WCGNNNNNNNCGW	1 cut(s)	82
PfeI	GAWTC	2 cut(s)	294, 461
PflMI	CCANNNNNTGG	1 cut(s)	445
PkrI	GCNGC	8 cut(s)	184, 205, 358, 361, 364, 367, 370, 373
PleI	GAGTC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	89
PpuMI	RGGWCCY	1 cut(s)	451
Psp5II	RGGWCCY	1 cut(s)	451
Psp6I	CCWGG	1 cut(s)	376
PspGI	CCWGG	1 cut(s)	376
PspPI	GGNCC	1 cut(s)	451
PspPPI	RGGWCCY	1 cut(s)	451
PsuI	RGATCY	1 cut(s)	25
SaqAI	TTAA	2 cut(s)	210, 215
SatI	GCNGC	8 cut(s)	183, 204, 357, 360, 363, 366, 369, 372
Sau3AI	GATC	1 cut(s)	25
Sau96I	GGNCC	1 cut(s)	451
SchI	GAGTC	1 cut(s)	90
ScrFI	CCNGG	1 cut(s)	378
SduI	GDGCHC	2 cut(s)	145, 275
SetI	ASST	4 cut(s)	142, 184, 205, 456
SfcI	CTRYAG	1 cut(s)	29
SinI	GGWCC	1 cut(s)	451
SmlI	CTYRAG	2 cut(s)	261, 465
SmoI	CTYRAG	2 cut(s)	261, 465
Sse9I	AATT	1 cut(s)	211
SspMI	CTAG	1 cut(s)	291
StyD4I	CCNGG	1 cut(s)	376
StyI	CCWWGG	1 cut(s)	95
TasI	AATT	1 cut(s)	211
TfiI	GAWTC	2 cut(s)	294, 461
Tru1I	TTAA	2 cut(s)	210, 215
Tru9I	TTAA	2 cut(s)	210, 215
TseI	GCWGC	8 cut(s)	182, 203, 356, 359, 362, 365, 368, 371
TspDTI	ATGAA	2 cut(s)	318, 378
Van91I	CCANNNNNTGG	1 cut(s)	445
VpaK11BI	GGWCC	1 cut(s)	451
XagI	CCTNNNNNAGG	1 cut(s)	15
XspI	CTAG	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.