Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0015265

Physical Location & Seq

Genomic Coordinates Reverse (-)

3106341 .. 3106814

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g03460.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGAAGACTCTCGCAGAGGGAAGGAAGAGAAGCCAGGCAAAGAAGAAGTACGTTATCGAGGCGTTCGGAGGAGGCCATGGGGGAAGTTTGCATCTGAGATAAGAGACCCTTCGAGACAGGGTGCTCGTCTGTGGCTTGGTACGTTCGACACGGCGGAGGAAGCTGCAAGGGCTTATGATAAGGCTGCTTTTGACCTAAGAGGTCATCTTGCCATACTCAACTTCCCCAACGAGTACTATTCTCGACTCATGGGCTCTCCTCCTTATCCTCCAAGATTTCAATCATCATTTTCTTCTTCTTCTTCGTCTTCTTCTGCTTCAGCTGCAGCTACTGGTAGTAGTGCTGCTGCTGGGAGCTTTGAGAGTGGAAGTAGCTCAACTGCTGGACAAGGAAGGCAGGTGTTTGAGTTCGAGTATTTGGATGACAAGGTGTTGGAGGACCTTCTTGATTGGGAAAAGGAGAAACATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

158

Amino Acids

17.51

Weight (kDa)

6.76

Isoelectric Point (pI)

65.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	18 - 69	1.4e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23230
fragaria_vesca	FvH4_4g03460
malus_domestica	MD13G1212900.v1.1 MD16G1216500.v1.1
prunus_persica	Prupe.1G037800_v2.0.a1
pyrus_communis	pycom13g18470 pycom16g18110
rosa_chinensis	RchiOBHm_Chr4g0392461
rosa_laevigata	RLG00000009804
rosa_multiflora	Rmu_sc0004216.1_g000004 Rmu_sc0041365.1_g000001
rosa_roxburghii	Rroxscaffold_5G00337720
rosa_rugosa	Rorug03G0339000
rosa_samantha	Rh4BG038100 Rh4DG040100
rosa_wichuraiana	Rw4G003370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	388
Acc36I	ACCTGC	1 cut(s)	388
AciI	CCGC	1 cut(s)	155
AcuI	CTGAAG	1 cut(s)	303
AfaI	GTAC	3 cut(s)	51, 142, 236
AgsI	TTSAA	1 cut(s)	281
AjnI	CCWGG	1 cut(s)	34
AluBI	AGCT	5 cut(s)	164, 323, 329, 357, 375
AluI	AGCT	5 cut(s)	164, 323, 329, 357, 375
Alw21I	GWGCWC	1 cut(s)	127
Alw26I	GTCTC	2 cut(s)	99, 109
AlwNI	CAGNNNCTG	1 cut(s)	332
AoxI	GGCC	1 cut(s)	74
ApeKI	GCWGC	6 cut(s)	164, 185, 323, 326, 344, 347
AspS9I	GGNCC	1 cut(s)	439
AvaII	GGWCC	1 cut(s)	439
BanII	GRGCYC	1 cut(s)	257
BbsI	GAAGAC	2 cut(s)	12, 300
Bbv12I	GWGCWC	1 cut(s)	127
BbvI	GCAGC	6 cut(s)	151, 172, 310, 331, 334, 338
BceAI	ACGGC	1 cut(s)	168
BciT130I	CCWGG	1 cut(s)	36
BcoDI	GTCTC	2 cut(s)	99, 109
BfmI	CTRYAG	1 cut(s)	324
BfuAI	ACCTGC	1 cut(s)	388
BisI	GCNGC	6 cut(s)	165, 186, 324, 327, 345, 348
BlsI	GCNGC	6 cut(s)	166, 187, 325, 328, 346, 349
BmcAI	AGTACT	1 cut(s)	236
Bme1390I	CCNGG	1 cut(s)	36
Bme18I	GGWCC	1 cut(s)	439
BmgT120I	GGNCC	1 cut(s)	439
BmrFI	CCNGG	1 cut(s)	36
BmsI	GCATC	1 cut(s)	101
BpiI	GAAGAC	2 cut(s)	12, 300
BsaBI	GATNNNNATC	1 cut(s)	280
BsaI	GGTCTC	1 cut(s)	99
BsaJI	CCNNGG	1 cut(s)	77
Bse1I	ACTGG	1 cut(s)	337
Bse8I	GATNNNNATC	1 cut(s)	280
BseBI	CCWGG	1 cut(s)	36
BseDI	CCNNGG	1 cut(s)	77
BseGI	GGATG	1 cut(s)	427
BseJI	GATNNNNATC	1 cut(s)	280
BseMII	CTCAG	1 cut(s)	87
BseNI	ACTGG	1 cut(s)	337
BseRI	GAGGAG	2 cut(s)	85, 249
BseXI	GCAGC	6 cut(s)	151, 172, 310, 331, 334, 338
BseYI	CCCAGC	1 cut(s)	350
BshFI	GGCC	1 cut(s)	76
BsiHKAI	GWGCWC	1 cut(s)	127
BsmAI	GTCTC	2 cut(s)	99, 109
BsnI	GGCC	1 cut(s)	76
Bso31I	GGTCTC	1 cut(s)	99
Bsp1286I	GDGCHC	2 cut(s)	127, 257
Bsp19I	CCATGG	1 cut(s)	77
BspACI	CCGC	1 cut(s)	155
BspANI	GGCC	1 cut(s)	76
BspCNI	CTCAG	1 cut(s)	88
BspMAI	CTGCAG	1 cut(s)	328
BspMI	ACCTGC	1 cut(s)	388
BspTNI	GGTCTC	1 cut(s)	99
BsrI	ACTGG	1 cut(s)	337
BssECI	CCNNGG	1 cut(s)	77
BssT1I	CCWWGG	1 cut(s)	77
Bst2UI	CCWGG	1 cut(s)	36
Bst6I	CTCTTC	1 cut(s)	21
BstDEI	CTNAG	2 cut(s)	96, 197
BstDSI	CCRYGG	1 cut(s)	77
BstF5I	GGATG	1 cut(s)	427
BstMAI	GTCTC	2 cut(s)	99, 109
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 170, 323
BstNI	CCWGG	1 cut(s)	36
BstSCI	CCNGG	1 cut(s)	34
BstSFI	CTRYAG	1 cut(s)	324
BstV1I	GCAGC	6 cut(s)	151, 172, 310, 331, 334, 338
BstV2I	GAAGAC	2 cut(s)	12, 300
BsuRI	GGCC	1 cut(s)	76
BtgI	CCRYGG	1 cut(s)	77
BtsCI	GGATG	1 cut(s)	427
BveI	ACCTGC	1 cut(s)	388
CaiI	CAGNNNCTG	1 cut(s)	332
Cfr13I	GGNCC	1 cut(s)	439
Csp6I	GTAC	3 cut(s)	50, 141, 235
CviAII	CATG	2 cut(s)	78, 250
CviQI	GTAC	3 cut(s)	50, 141, 235
DdeI	CTNAG	2 cut(s)	96, 197
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
EciI	GGCGGA	1 cut(s)	170
Eco130I	CCWWGG	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	257
Eco31I	GGTCTC	1 cut(s)	99
Eco47I	GGWCC	1 cut(s)	439
Eco57I	CTGAAG	1 cut(s)	303
EcoO109I	RGGNCCY	1 cut(s)	439
EcoRII	CCWGG	1 cut(s)	34
EcoT14I	CCWWGG	1 cut(s)	77
EcoT38I	GRGCYC	1 cut(s)	257
ErhI	CCWWGG	1 cut(s)	77
FaeI	CATG	2 cut(s)	81, 253
FaiI	YATR	5 cut(s)	79, 177, 215, 251, 468
FalI	AAGNNNNNCTT	2 cut(s)	94, 126
FatI	CATG	2 cut(s)	77, 249
Fnu4HI	GCNGC	6 cut(s)	165, 186, 324, 327, 345, 348
FokI	GGATG	1 cut(s)	434
FriOI	GRGCYC	1 cut(s)	257
Fsp4HI	GCNGC	6 cut(s)	165, 186, 324, 327, 345, 348
GluI	GCNGC	6 cut(s)	165, 186, 324, 327, 345, 348
GsaI	CCCAGC	1 cut(s)	354
HaeIII	GGCC	1 cut(s)	76
Hin1II	CATG	2 cut(s)	81, 253
HinfI	GANTC	2 cut(s)	8, 246
Hpy188I	TCNGA	2 cut(s)	69, 97
Hpy188III	TCNNGA	3 cut(s)	114, 243, 446
HpyAV	CCTTC	4 cut(s)	16, 120, 387, 452
HpyCH4IV	ACGT	2 cut(s)	52, 143
HpyCH4V	TGCA	3 cut(s)	92, 167, 326
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 170, 323
HpyF3I	CTNAG	2 cut(s)	96, 197
HpySE526I	ACGT	2 cut(s)	52, 143
Hsp92II	CATG	2 cut(s)	81, 253
LmnI	GCTCC	1 cut(s)	354
LpnPI	CCDG	7 cut(s)	21, 48, 104, 318, 336, 369, 383
Lsp1109I	GCAGC	6 cut(s)	151, 172, 310, 331, 334, 338
LweI	GCATC	1 cut(s)	101
MaeII	ACGT	2 cut(s)	52, 143
MboII	GAAGA	9 cut(s)	17, 38, 56, 285, 288, 291, 294, 300, 303
MhlI	GDGCHC	2 cut(s)	127, 257
MlyI	GAGTC	2 cut(s)	2, 240
MmeI	TCCRAC	1 cut(s)	414
MnlI	CCTC	9 cut(s)	11, 53, 63, 66, 151, 194, 270, 279, 430
MspA1I	CMGCKG	1 cut(s)	323
MspR9I	CCNGG	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	36
MwoI	GCNNNNNNNGC	3 cut(s)	161, 170, 323
NcoI	CCATGG	1 cut(s)	77
NlaIII	CATG	2 cut(s)	81, 253
PaqCI	CACCTGC	1 cut(s)	388
PkrI	GCNGC	6 cut(s)	166, 187, 325, 328, 346, 349
PleI	GAGTC	2 cut(s)	2, 240
PpsI	GAGTC	2 cut(s)	2, 240
PpuMI	RGGWCCY	1 cut(s)	439
Psp5II	RGGWCCY	1 cut(s)	439
Psp6I	CCWGG	1 cut(s)	34
PspFI	CCCAGC	1 cut(s)	350
PspGI	CCWGG	1 cut(s)	34
PspPI	GGNCC	1 cut(s)	439
PspPPI	RGGWCCY	1 cut(s)	439
PstI	CTGCAG	1 cut(s)	328
PstNI	CAGNNNCTG	1 cut(s)	332
PvuII	CAGCTG	1 cut(s)	323
RsaI	GTAC	3 cut(s)	51, 142, 236
RsaNI	GTAC	3 cut(s)	50, 141, 235
SatI	GCNGC	6 cut(s)	165, 186, 324, 327, 345, 348
Sau96I	GGNCC	1 cut(s)	439
ScaI	AGTACT	1 cut(s)	236
SchI	GAGTC	2 cut(s)	2, 240
ScrFI	CCNGG	1 cut(s)	36
SduI	GDGCHC	2 cut(s)	127, 257
SfaNI	GCATC	1 cut(s)	101
SfcI	CTRYAG	1 cut(s)	324
SinI	GGWCC	1 cut(s)	439
SsiI	CCGC	1 cut(s)	155
StyD4I	CCNGG	1 cut(s)	34
StyI	CCWWGG	1 cut(s)	77
TaiI	ACGT	2 cut(s)	55, 146
TaqI	TCGA	5 cut(s)	58, 113, 147, 244, 411
TatI	WGTACW	1 cut(s)	234
TseI	GCWGC	6 cut(s)	164, 185, 323, 326, 344, 347
VpaK11BI	GGWCC	1 cut(s)	439
ZrmI	AGTACT	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.