Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0015265

Physical Location & Seq

Genomic Coordinates Reverse (-)

21269853 .. 21270323

Gene Structure 471 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1216500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGAAAACCCTCGCAGAGGAAAGGATCTAGAGAAGCAAGGAAAGGAAGAGAAGGGAAGCGAAGAAGTACGTTACCGTGGGGTCCGAAGAAGGCCGTGGGGGAAGTTTGCTTCTGAGATAAGAGACCCTTCTAAGCAGGGTGCTCGTCTGTGGCTTGGTACATTTGACACCGCTGAGGAAGCTGCAAGGGCTTATGATAAGGCTGCCTTTAATTTAAGGGGTCATCTTGCCACACTAAATTTTCCAAATGAATATTATGCTCAAGTTATGGGCTCTCATCCTTATCCTCCTAGATTCTCGGCACTTTCTTCTTCTTCTTCATCTTCTTCTTCCACTTCGTCATCTTCTGCTGCTGCACCGGGTGGAAGCTCATCTGCCAGACAAGGAAGTAGGCAAGTGTTTGAGATTGAGTACTTGGATAACAAGGTGTTGGAAGACCTCCTTGATTATGAAGAGGAGAAGAATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

157

Amino Acids

17.43

Weight (kDa)

7.91

Isoelectric Point (pI)

69.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	24 - 75	2.4e-16	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23230
fragaria_vesca	FvH4_4g03460
malus_domestica	MD13G1212900.v1.1 MD16G1216500.v1.1
prunus_persica	Prupe.1G037800_v2.0.a1
pyrus_communis	pycom13g18470 pycom16g18110
rosa_chinensis	RchiOBHm_Chr4g0392461
rosa_laevigata	RLG00000009804
rosa_multiflora	Rmu_sc0004216.1_g000004 Rmu_sc0041365.1_g000001
rosa_roxburghii	Rroxscaffold_5G00337720
rosa_rugosa	Rorug03G0339000
rosa_samantha	Rh4BG038100 Rh4DG040100
rosa_wichuraiana	Rw4G003370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	171
AclWI	GGATC	1 cut(s)	33
AcsI	RAATTY	1 cut(s)	238
AdeI	CACNNNGTG	1 cut(s)	362
AfaI	GTAC	3 cut(s)	69, 160, 413
AfiI	CCNNNNNNNGG	1 cut(s)	17
AluBI	AGCT	2 cut(s)	182, 369
AluI	AGCT	2 cut(s)	182, 369
Alw21I	GWGCWC	1 cut(s)	145
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	1 cut(s)	33
AoxI	GGCC	1 cut(s)	92
ApeKI	GCWGC	4 cut(s)	182, 203, 350, 353
ApoI	RAATTY	1 cut(s)	238
AspS9I	GGNCC	1 cut(s)	82
AsuC2I	CCSGG	1 cut(s)	360
AvaII	GGWCC	1 cut(s)	82
BanII	GRGCYC	1 cut(s)	275
BbsI	GAAGAC	1 cut(s)	441
Bbv12I	GWGCWC	1 cut(s)	145
BbvCI	CCTCAGC	1 cut(s)	174
BbvI	GCAGC	4 cut(s)	169, 190, 337, 340
BceAI	ACGGC	1 cut(s)	79
BcgI	CGANNNNNNTGC	2 cut(s)	125, 159
BcnI	CCSGG	1 cut(s)	360
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	2 cut(s)	29, 291
BisI	GCNGC	4 cut(s)	183, 204, 351, 354
BlsI	GCNGC	4 cut(s)	184, 205, 352, 355
BmcAI	AGTACT	1 cut(s)	413
Bme1390I	CCNGG	1 cut(s)	360
Bme18I	GGWCC	1 cut(s)	82
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	1 cut(s)	83
BmrFI	CCNGG	1 cut(s)	360
BpiI	GAAGAC	1 cut(s)	441
Bpu10I	CCTNAGC	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	246
BpuMI	CCSGG	1 cut(s)	360
BsaI	GGTCTC	1 cut(s)	117
BsaJI	CCNNGG	2 cut(s)	76, 95
Bsc4I	CCNNNNNNNGG	1 cut(s)	17
BseDI	CCNNGG	2 cut(s)	76, 95
BseGI	GGATG	1 cut(s)	277
BseLI	CCNNNNNNNGG	1 cut(s)	17
BseMII	CTCAG	2 cut(s)	105, 165
BseRI	GAGGAG	1 cut(s)	470
BseXI	GCAGC	4 cut(s)	169, 190, 337, 340
BsgI	GTGCAG	1 cut(s)	339
BshFI	GGCC	1 cut(s)	94
BsiHKAI	GWGCWC	1 cut(s)	145
BsiSI	CCGG	1 cut(s)	359
BslI	CCNNNNNNNGG	1 cut(s)	17
BsmAI	GTCTC	1 cut(s)	117
BsnI	GGCC	1 cut(s)	94
Bso31I	GGTCTC	1 cut(s)	117
Bsp1286I	GDGCHC	2 cut(s)	145, 275
Bsp143I	GATC	1 cut(s)	25
BspACI	CCGC	1 cut(s)	171
BspANI	GGCC	1 cut(s)	94
BspCNI	CTCAG	2 cut(s)	106, 166
BspLI	GGNNCC	1 cut(s)	83
BspPI	GGATC	1 cut(s)	33
BspTNI	GGTCTC	1 cut(s)	117
BssECI	CCNNGG	2 cut(s)	76, 95
BssMI	GATC	1 cut(s)	25
Bst4CI	ACNGT	1 cut(s)	77
Bst6I	CTCTTC	2 cut(s)	42, 447
BstDEI	CTNAG	3 cut(s)	114, 132, 174
BstDSI	CCRYGG	2 cut(s)	76, 95
BstENI	CCTNNNNNAGG	1 cut(s)	15
BstF5I	GGATG	1 cut(s)	277
BstKTI	GATC	1 cut(s)	28
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	1 cut(s)	25
BstMWI	GCNNNNNNNGC	2 cut(s)	179, 188
BstSCI	CCNGG	1 cut(s)	358
BstV1I	GCAGC	4 cut(s)	169, 190, 337, 340
BstV2I	GAAGAC	1 cut(s)	441
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
BsuRI	GGCC	1 cut(s)	94
BtgI	CCRYGG	2 cut(s)	76, 95
BtsCI	GGATG	1 cut(s)	277
Cfr13I	GGNCC	1 cut(s)	82
Csp6I	GTAC	3 cut(s)	68, 159, 412
CviJI	RGCY	7 cut(s)	94, 154, 182, 191, 203, 273, 369
CviKI_1	RGCY	7 cut(s)	94, 154, 182, 191, 203, 273, 369
CviQI	GTAC	3 cut(s)	68, 159, 412
DdeI	CTNAG	3 cut(s)	114, 132, 174
DpnI	GATC	1 cut(s)	27
DpnII	GATC	1 cut(s)	25
DraIII	CACNNNGTG	1 cut(s)	362
Eam1104I	CTCTTC	2 cut(s)	42, 447
EarI	CTCTTC	2 cut(s)	42, 447
Eco24I	GRGCYC	1 cut(s)	275
Eco31I	GGTCTC	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	82
EcoNI	CCTNNNNNAGG	1 cut(s)	15
EcoT38I	GRGCYC	1 cut(s)	275
FaiI	YATR	4 cut(s)	195, 258, 269, 450
FalI	AAGNNNNNCTT	6 cut(s)	112, 144, 191, 223, 426, 458
Fnu4HI	GCNGC	4 cut(s)	183, 204, 351, 354
FokI	GGATG	1 cut(s)	264
FriOI	GRGCYC	1 cut(s)	275
Fsp4HI	GCNGC	4 cut(s)	183, 204, 351, 354
FspBI	CTAG	2 cut(s)	29, 291
GluI	GCNGC	4 cut(s)	183, 204, 351, 354
HaeIII	GGCC	1 cut(s)	94
HapII	CCGG	1 cut(s)	359
HinfI	GANTC	1 cut(s)	294
HpaII	CCGG	1 cut(s)	359
Hpy188I	TCNGA	2 cut(s)	86, 115
Hpy188III	TCNNGA	1 cut(s)	29
HpyAV	CCTTC	3 cut(s)	46, 84, 138
HpyCH4III	ACNGT	1 cut(s)	77
HpyCH4IV	ACGT	1 cut(s)	70
HpyCH4V	TGCA	2 cut(s)	185, 356
HpyF10VI	GCNNNNNNNGC	2 cut(s)	179, 188
HpyF3I	CTNAG	3 cut(s)	114, 132, 174
HpySE526I	ACGT	1 cut(s)	70
Kzo9I	GATC	1 cut(s)	25
LpnPI	CCDG	3 cut(s)	122, 372, 391
Lsp1109I	GCAGC	4 cut(s)	169, 190, 337, 340
MaeI	CTAG	2 cut(s)	29, 291
MaeII	ACGT	1 cut(s)	70
MaeIII	GTNAC	1 cut(s)	71
MalI	GATC	1 cut(s)	27
MboI	GATC	1 cut(s)	25
MflI	RGATCY	1 cut(s)	25
MhlI	GDGCHC	2 cut(s)	145, 275
MluCI	AATT	2 cut(s)	211, 238
MmeI	TCCRAC	1 cut(s)	411
MnlI	CCTC	6 cut(s)	11, 21, 169, 297, 448, 449
MseI	TTAA	2 cut(s)	210, 215
MspA1I	CMGCKG	1 cut(s)	173
MspI	CCGG	1 cut(s)	359
MspR9I	CCNGG	1 cut(s)	360
MwoI	GCNNNNNNNGC	2 cut(s)	179, 188
NciI	CCSGG	1 cut(s)	360
NdeII	GATC	1 cut(s)	25
NlaIV	GGNNCC	1 cut(s)	83
NmeAIII	GCCGAG	1 cut(s)	278
PfeI	GAWTC	1 cut(s)	294
PkrI	GCNGC	4 cut(s)	184, 205, 352, 355
PspN4I	GGNNCC	1 cut(s)	83
PspPI	GGNCC	1 cut(s)	82
PsuI	RGATCY	1 cut(s)	25
RsaI	GTAC	3 cut(s)	69, 160, 413
RsaNI	GTAC	3 cut(s)	68, 159, 412
SaqAI	TTAA	2 cut(s)	210, 215
SatI	GCNGC	4 cut(s)	183, 204, 351, 354
Sau3AI	GATC	1 cut(s)	25
Sau96I	GGNCC	1 cut(s)	82
ScaI	AGTACT	1 cut(s)	413
ScrFI	CCNGG	1 cut(s)	360
SduI	GDGCHC	2 cut(s)	145, 275
SetI	ASST	5 cut(s)	73, 184, 371, 429, 441
SinI	GGWCC	1 cut(s)	82
SmlI	CTYRAG	1 cut(s)	261
SmoI	CTYRAG	1 cut(s)	261
Sse9I	AATT	2 cut(s)	211, 238
SsiI	CCGC	1 cut(s)	171
SspI	AATATT	1 cut(s)	254
SspMI	CTAG	2 cut(s)	29, 291
StyD4I	CCNGG	1 cut(s)	358
TaaI	ACNGT	1 cut(s)	77
TaiI	ACGT	1 cut(s)	73
TasI	AATT	2 cut(s)	211, 238
TatI	WGTACW	1 cut(s)	411
TfiI	GAWTC	1 cut(s)	294
Tru1I	TTAA	2 cut(s)	210, 215
Tru9I	TTAA	2 cut(s)	210, 215
TseI	GCWGC	4 cut(s)	182, 203, 350, 353
TspDTI	ATGAA	3 cut(s)	264, 309, 465
VpaK11BI	GGWCC	1 cut(s)	82
XagI	CCTNNNNNAGG	1 cut(s)	15
XapI	RAATTY	1 cut(s)	238
XbaI	TCTAGA	1 cut(s)	28
XspI	CTAG	2 cut(s)	29, 291
ZrmI	AGTACT	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.