Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004216.1

Orthogroup ID

OG0015265

Physical Location & Seq

Genomic Coordinates Forward (+)

19582 .. 20052

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004216.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atggaagaccctcgcaaaggaaaggaagagaaggcaggcatggaagaagtgcgttatcggggcgttcggaggaggccatgggggaagtttgcgtcggagataagagacccttcaaggcagggtgctcgtcagtggcttggtacattcgacacagcagaggaagctgcaagggcttacgataaggctgcttttaacctaaggggccatcttgccatactcaacttccccaatgagtactattctcgagtcatgggatctcctccttatcctccgagattccaatcatccgtttcttcttcatcgtcttcttctgcttcggctgcagctactgctagtagaggagctggtgggagctttgagagtggaagcagctcctctgctggacaaggaaggcaagtgtttgagttcgagtatttggatgacaaggtgttggaggatcttcttgattgggaagaggagaaacgtaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

156

Amino Acids

17.4

Weight (kDa)

6.63

Isoelectric Point (pI)

63.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23230
fragaria_vesca	FvH4_4g03460
malus_domestica	MD13G1212900.v1.1 MD16G1216500.v1.1
prunus_persica	Prupe.1G037800_v2.0.a1
pyrus_communis	pycom13g18470 pycom16g18110
rosa_chinensis	RchiOBHm_Chr4g0392461
rosa_laevigata	RLG00000009804
rosa_multiflora	Rmu_sc0004216.1_g000004 Rmu_sc0041365.1_g000001
rosa_roxburghii	Rroxscaffold_5G00337720
rosa_rugosa	Rorug03G0339000
rosa_samantha	Rh4BG038100 Rh4DG040100
rosa_wichuraiana	Rw4G003370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	262, 444
AfaI	GTAC	2 cut(s)	142, 236
AfiI	CCNNNNNNNGG	1 cut(s)	17
AgsI	TTSAA	1 cut(s)	114
AluBI	AGCT	5 cut(s)	164, 326, 344, 354, 372
AluI	AGCT	5 cut(s)	164, 326, 344, 354, 372
Alw21I	GWGCWC	1 cut(s)	127
Alw26I	GTCTC	1 cut(s)	99
AlwI	GGATC	2 cut(s)	262, 444
AlwNI	CAGNNNCTG	1 cut(s)	329
Ama87I	CYCGRG	1 cut(s)	243
AoxI	GGCC	2 cut(s)	74, 202
ApeKI	GCWGC	5 cut(s)	164, 185, 320, 323, 369
AspS9I	GGNCC	1 cut(s)	202
AvaI	CYCGRG	1 cut(s)	243
AxyI	CCTNAGG	1 cut(s)	197
BbsI	GAAGAC	2 cut(s)	12, 297
Bbv12I	GWGCWC	1 cut(s)	127
BbvI	GCAGC	5 cut(s)	151, 172, 307, 335, 381
BccI	CCATC	1 cut(s)	213
BcgI	CGANNNNNNTGC	4 cut(s)	107, 141, 167, 201
BcoDI	GTCTC	1 cut(s)	99
BfaI	CTAG	1 cut(s)	333
BfmI	CTRYAG	1 cut(s)	321
BisI	GCNGC	5 cut(s)	165, 186, 321, 324, 370
BlsI	GCNGC	5 cut(s)	166, 187, 322, 325, 371
BmcAI	AGTACT	1 cut(s)	236
BmeT110I	CYCGRG	1 cut(s)	243
BmgT120I	GGNCC	1 cut(s)	202
BmiI	GGNNCC	1 cut(s)	203
BpiI	GAAGAC	2 cut(s)	12, 297
BsaBI	GATNNNNATC	1 cut(s)	280
BsaI	GGTCTC	1 cut(s)	99
BsaJI	CCNNGG	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	1 cut(s)	17
Bse21I	CCTNAGG	1 cut(s)	197
Bse8I	GATNNNNATC	1 cut(s)	280
BseDI	CCNNGG	1 cut(s)	77
BseGI	GGATG	2 cut(s)	284, 424
BseJI	GATNNNNATC	1 cut(s)	280
BseLI	CCNNNNNNNGG	1 cut(s)	17
BseRI	GAGGAG	5 cut(s)	85, 249, 354, 364, 470
BseXI	GCAGC	5 cut(s)	151, 172, 307, 335, 381
BshFI	GGCC	2 cut(s)	76, 204
BsiHKAI	GWGCWC	1 cut(s)	127
BsiHKCI	CYCGRG	1 cut(s)	243
BslI	CCNNNNNNNGG	1 cut(s)	17
BsmAI	GTCTC	1 cut(s)	99
BsnI	GGCC	2 cut(s)	76, 204
Bso31I	GGTCTC	1 cut(s)	99
BsoBI	CYCGRG	1 cut(s)	243
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp143I	GATC	2 cut(s)	254, 436
Bsp19I	CCATGG	1 cut(s)	77
BspANI	GGCC	2 cut(s)	76, 204
BspLI	GGNNCC	1 cut(s)	203
BspMAI	CTGCAG	1 cut(s)	325
BspPI	GGATC	2 cut(s)	262, 444
BspTNI	GGTCTC	1 cut(s)	99
BssECI	CCNNGG	1 cut(s)	77
BssMI	GATC	2 cut(s)	254, 436
BssT1I	CCWWGG	1 cut(s)	77
Bst6I	CTCTTC	2 cut(s)	21, 447
BstAPI	GCANNNNNTGC	1 cut(s)	329
BstC8I	GCNNGC	1 cut(s)	37
BstDEI	CTNAG	1 cut(s)	197
BstDSI	CCRYGG	1 cut(s)	77
BstENI	CCTNNNNNAGG	1 cut(s)	15
BstF5I	GGATG	2 cut(s)	284, 424
BstKTI	GATC	2 cut(s)	257, 439
BstMAI	GTCTC	1 cut(s)	99
BstMBI	GATC	2 cut(s)	254, 436
BstMWI	GCNNNNNNNGC	4 cut(s)	161, 170, 320, 329
BstSFI	CTRYAG	1 cut(s)	321
BstV1I	GCAGC	5 cut(s)	151, 172, 307, 335, 381
BstV2I	GAAGAC	2 cut(s)	12, 297
BstX2I	RGATCY	2 cut(s)	254, 436
BstYI	RGATCY	2 cut(s)	254, 436
Bsu36I	CCTNAGG	1 cut(s)	197
BsuRI	GGCC	2 cut(s)	76, 204
BtgI	CCRYGG	1 cut(s)	77
BtsCI	GGATG	2 cut(s)	284, 424
BtsIMutI	CAGTG	1 cut(s)	137
Cac8I	GCNNGC	1 cut(s)	37
CaiI	CAGNNNCTG	1 cut(s)	329
Cfr13I	GGNCC	1 cut(s)	202
CseI	GACGC	1 cut(s)	81
Csp6I	GTAC	2 cut(s)	141, 235
CviAII	CATG	3 cut(s)	40, 78, 250
CviQI	GTAC	2 cut(s)	141, 235
DdeI	CTNAG	1 cut(s)	197
DpnI	GATC	2 cut(s)	256, 438
DpnII	GATC	2 cut(s)	254, 436
Eam1104I	CTCTTC	2 cut(s)	21, 447
EarI	CTCTTC	2 cut(s)	21, 447
Eco130I	CCWWGG	1 cut(s)	77
Eco31I	GGTCTC	1 cut(s)	99
Eco81I	CCTNAGG	1 cut(s)	197
Eco88I	CYCGRG	1 cut(s)	243
EcoNI	CCTNNNNNAGG	1 cut(s)	15
EcoT14I	CCWWGG	1 cut(s)	77
ErhI	CCWWGG	1 cut(s)	77
FaeI	CATG	3 cut(s)	43, 81, 253
FaiI	YATR	4 cut(s)	41, 79, 215, 251
FalI	AAGNNNNNCTT	2 cut(s)	94, 126
FatI	CATG	3 cut(s)	39, 77, 249
Fnu4HI	GCNGC	5 cut(s)	165, 186, 321, 324, 370
FokI	GGATG	2 cut(s)	271, 431
Fsp4HI	GCNGC	5 cut(s)	165, 186, 321, 324, 370
FspBI	CTAG	1 cut(s)	333
GluI	GCNGC	5 cut(s)	165, 186, 321, 324, 370
HaeIII	GGCC	2 cut(s)	76, 204
HgaI	GACGC	1 cut(s)	81
Hin1II	CATG	3 cut(s)	43, 81, 253
HinfI	GANTC	2 cut(s)	246, 276
Hpy188I	TCNGA	3 cut(s)	69, 97, 273
Hpy188III	TCNNGA	2 cut(s)	243, 443
Hpy99I	CGWCG	1 cut(s)	97
HpyAV	CCTTC	3 cut(s)	25, 120, 384
HpyCH4IV	ACGT	1 cut(s)	463
HpyCH4V	TGCA	2 cut(s)	167, 323
HpyF10VI	GCNNNNNNNGC	4 cut(s)	161, 170, 320, 329
HpyF3I	CTNAG	1 cut(s)	197
HpySE526I	ACGT	1 cut(s)	463
Hsp92II	CATG	3 cut(s)	43, 81, 253
Kzo9I	GATC	2 cut(s)	254, 436
LmnI	GCTCC	3 cut(s)	341, 351, 377
LpnPI	CCDG	4 cut(s)	21, 104, 330, 366
Lsp1109I	GCAGC	5 cut(s)	151, 172, 307, 335, 381
MaeI	CTAG	1 cut(s)	333
MaeII	ACGT	1 cut(s)	463
MalI	GATC	2 cut(s)	256, 438
MboI	GATC	2 cut(s)	254, 436
MboII	GAAGA	9 cut(s)	17, 38, 56, 285, 288, 297, 300, 431, 464
MflI	RGATCY	2 cut(s)	254, 436
MhlI	GDGCHC	1 cut(s)	127
MlyI	GAGTC	1 cut(s)	255
MmeI	TCCRAC	2 cut(s)	75, 411
MseI	TTAA	1 cut(s)	192
MwoI	GCNNNNNNNGC	4 cut(s)	161, 170, 320, 329
NcoI	CCATGG	1 cut(s)	77
NdeII	GATC	2 cut(s)	254, 436
NlaIII	CATG	3 cut(s)	43, 81, 253
NlaIV	GGNNCC	1 cut(s)	203
PaeR7I	CTCGAG	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	276
PkrI	GCNGC	5 cut(s)	166, 187, 322, 325, 371
PleI	GAGTC	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	254
PspN4I	GGNNCC	1 cut(s)	203
PspPI	GGNCC	1 cut(s)	202
PstI	CTGCAG	1 cut(s)	325
PstNI	CAGNNNCTG	1 cut(s)	329
PsuI	RGATCY	2 cut(s)	254, 436
RsaI	GTAC	2 cut(s)	142, 236
RsaNI	GTAC	2 cut(s)	141, 235
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	5 cut(s)	165, 186, 321, 324, 370
Sau3AI	GATC	2 cut(s)	254, 436
Sau96I	GGNCC	1 cut(s)	202
ScaI	AGTACT	1 cut(s)	236
SchI	GAGTC	1 cut(s)	255
SduI	GDGCHC	1 cut(s)	127
SetI	ASST	8 cut(s)	166, 198, 328, 346, 356, 374, 429, 466
SfcI	CTRYAG	1 cut(s)	321
Sfr274I	CTCGAG	1 cut(s)	243
SlaI	CTCGAG	1 cut(s)	243
SmlI	CTYRAG	1 cut(s)	243
SmoI	CTYRAG	1 cut(s)	243
SspMI	CTAG	1 cut(s)	333
StyI	CCWWGG	1 cut(s)	77
TaiI	ACGT	1 cut(s)	466
TaqI	TCGA	3 cut(s)	147, 244, 408
TatI	WGTACW	1 cut(s)	234
TfiI	GAWTC	1 cut(s)	276
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TscAI	CASTG	1 cut(s)	137
TseI	GCWGC	5 cut(s)	164, 185, 320, 323, 369
TspDTI	ATGAA	1 cut(s)	288
TspGWI	ACGGA	1 cut(s)	277
TspRI	CASTG	1 cut(s)	137
XagI	CCTNNNNNAGG	1 cut(s)	15
XhoI	CTCGAG	1 cut(s)	243
XspI	CTAG	1 cut(s)	333
ZrmI	AGTACT	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.