Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0015265

Physical Location & Seq

Genomic Coordinates Reverse (-)

19930592 .. 19931065

Gene Structure 474 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1212900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGAAAACCTTCGCAGAGGAAAGGATCCAGAGAAACAAGGAAAGCAAGAGAAGGGAAGCCAAGAAGTACGTTACCGCGGGGTCCGAAGAAGGCCGTGGGGGAAGTTTGCTTCTGAGATAAGAGACCCTTCTAAGCAAGGTGCTCGTCTGTGGCTTGGTACATTTGACACCGCGGAGGAAGCTGCAAGGGCTTATGATAATGCTGCTTTTAATTTAAGGGGTCATCTTGCCATACTAAATTTTCCAAATGAGTATTATGCTCAAGTTATGGGGTCTCCTCCTTATCCTCCTAGATTCTCGACACTTTCTTCTTCTTCTTCTTCTTCATCTTCTTCCACTTCATCATCTTCTGCCGCTGCACCGGGTGGAAGTTCATCTGCTGGACAAGGAAGCAGGCAAGTGTTTGAGATTGAGTACTTGGATAACAAAGTGTTAGAGGACCTTCTTGATTATGAAGAGGAGAAGAAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

158

Amino Acids

17.42

Weight (kDa)

8.8

Isoelectric Point (pI)

76.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	24 - 75	3.4e-16	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23230
fragaria_vesca	FvH4_4g03460
malus_domestica	MD13G1212900.v1.1 MD16G1216500.v1.1
prunus_persica	Prupe.1G037800_v2.0.a1
pyrus_communis	pycom13g18470 pycom16g18110
rosa_chinensis	RchiOBHm_Chr4g0392461
rosa_laevigata	RLG00000009804
rosa_multiflora	Rmu_sc0004216.1_g000004 Rmu_sc0041365.1_g000001
rosa_roxburghii	Rroxscaffold_5G00337720
rosa_rugosa	Rorug03G0339000
rosa_samantha	Rh4BG038100 Rh4DG040100
rosa_wichuraiana	Rw4G003370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	78, 173
AciI	CCGC	5 cut(s)	76, 78, 171, 173, 354
AclWI	GGATC	2 cut(s)	20, 33
AcsI	RAATTY	1 cut(s)	238
AdeI	CACNNNGTG	1 cut(s)	365
AfaI	GTAC	3 cut(s)	69, 160, 416
AluBI	AGCT	1 cut(s)	182
AluI	AGCT	1 cut(s)	182
Alw21I	GWGCWC	1 cut(s)	145
Alw26I	GTCTC	2 cut(s)	117, 279
AlwI	GGATC	2 cut(s)	20, 33
AoxI	GGCC	1 cut(s)	92
ApeKI	GCWGC	3 cut(s)	182, 203, 356
ApoI	RAATTY	1 cut(s)	238
Asp700I	GAANNNNTTC	1 cut(s)	9
AspS9I	GGNCC	2 cut(s)	82, 439
AsuC2I	CCSGG	1 cut(s)	363
AvaII	GGWCC	2 cut(s)	82, 439
BamHI	GGATCC	1 cut(s)	25
Bbv12I	GWGCWC	1 cut(s)	145
BbvI	GCAGC	3 cut(s)	169, 190, 343
BceAI	ACGGC	1 cut(s)	79
BcgI	CGANNNNNNTGC	2 cut(s)	125, 159
BcnI	CCSGG	1 cut(s)	363
BcoDI	GTCTC	2 cut(s)	117, 279
BfaI	CTAG	1 cut(s)	291
BisI	GCNGC	4 cut(s)	183, 204, 354, 357
BlsI	GCNGC	4 cut(s)	184, 205, 355, 358
BmcAI	AGTACT	1 cut(s)	416
Bme1390I	CCNGG	1 cut(s)	363
Bme18I	GGWCC	2 cut(s)	82, 439
BmgT120I	GGNCC	2 cut(s)	82, 439
BmiI	GGNNCC	2 cut(s)	27, 83
BmrFI	CCNGG	1 cut(s)	363
BpuEI	CTTGAG	1 cut(s)	246
BpuMI	CCSGG	1 cut(s)	363
BsaI	GGTCTC	2 cut(s)	117, 279
BsaJI	CCNNGG	3 cut(s)	76, 95, 171
BseDI	CCNNGG	3 cut(s)	76, 95, 171
BseMII	CTCAG	1 cut(s)	105
BseRI	GAGGAG	2 cut(s)	267, 473
BseXI	GCAGC	3 cut(s)	169, 190, 343
BsgI	GTGCAG	1 cut(s)	342
Bsh1236I	CGCG	2 cut(s)	78, 173
BshFI	GGCC	1 cut(s)	94
BsiHKAI	GWGCWC	1 cut(s)	145
BsiSI	CCGG	1 cut(s)	362
BsmAI	GTCTC	2 cut(s)	117, 279
BsnI	GGCC	1 cut(s)	94
Bso31I	GGTCTC	2 cut(s)	117, 279
Bsp1286I	GDGCHC	1 cut(s)	145
Bsp143I	GATC	1 cut(s)	25
BspACI	CCGC	5 cut(s)	76, 78, 171, 173, 354
BspANI	GGCC	1 cut(s)	94
BspCNI	CTCAG	1 cut(s)	106
BspFNI	CGCG	2 cut(s)	78, 173
BspLI	GGNNCC	2 cut(s)	27, 83
BspPI	GGATC	2 cut(s)	20, 33
BspTNI	GGTCTC	2 cut(s)	117, 279
BssECI	CCNNGG	3 cut(s)	76, 95, 171
BssMI	GATC	1 cut(s)	25
Bst6I	CTCTTC	1 cut(s)	450
BstC8I	GCNNGC	1 cut(s)	395
BstDEI	CTNAG	2 cut(s)	114, 132
BstDSI	CCRYGG	3 cut(s)	76, 95, 171
BstFNI	CGCG	2 cut(s)	78, 173
BstKTI	GATC	1 cut(s)	28
BstMAI	GTCTC	2 cut(s)	117, 279
BstMBI	GATC	1 cut(s)	25
BstMWI	GCNNNNNNNGC	2 cut(s)	179, 188
BstSCI	CCNGG	1 cut(s)	361
BstUI	CGCG	2 cut(s)	78, 173
BstV1I	GCAGC	3 cut(s)	169, 190, 343
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
BsuRI	GGCC	1 cut(s)	94
BtgI	CCRYGG	3 cut(s)	76, 95, 171
Cac8I	GCNNGC	1 cut(s)	395
Cfr13I	GGNCC	2 cut(s)	82, 439
Cfr42I	CCGCGG	2 cut(s)	79, 174
Csp6I	GTAC	3 cut(s)	68, 159, 415
CviJI	RGCY	5 cut(s)	60, 94, 154, 182, 191
CviKI_1	RGCY	5 cut(s)	60, 94, 154, 182, 191
CviQI	GTAC	3 cut(s)	68, 159, 415
DdeI	CTNAG	2 cut(s)	114, 132
DpnI	GATC	1 cut(s)	27
DpnII	GATC	1 cut(s)	25
DraIII	CACNNNGTG	1 cut(s)	365
Eam1104I	CTCTTC	1 cut(s)	450
EarI	CTCTTC	1 cut(s)	450
Eco31I	GGTCTC	2 cut(s)	117, 279
Eco47I	GGWCC	2 cut(s)	82, 439
EcoO109I	RGGNCCY	1 cut(s)	439
FaiI	YATR	5 cut(s)	195, 233, 258, 269, 453
FalI	AAGNNNNNCTT	2 cut(s)	112, 144
FauI	CCCGC	1 cut(s)	71
Fnu4HI	GCNGC	4 cut(s)	183, 204, 354, 357
Fsp4HI	GCNGC	4 cut(s)	183, 204, 354, 357
FspBI	CTAG	1 cut(s)	291
GluI	GCNGC	4 cut(s)	183, 204, 354, 357
HaeIII	GGCC	1 cut(s)	94
HapII	CCGG	1 cut(s)	362
HinfI	GANTC	1 cut(s)	294
HpaII	CCGG	1 cut(s)	362
Hpy188I	TCNGA	2 cut(s)	86, 115
Hpy188III	TCNNGA	3 cut(s)	29, 298, 446
HpyAV	CCTTC	5 cut(s)	20, 46, 84, 138, 452
HpyCH4IV	ACGT	1 cut(s)	70
HpyCH4V	TGCA	2 cut(s)	185, 359
HpyF10VI	GCNNNNNNNGC	2 cut(s)	179, 188
HpyF3I	CTNAG	2 cut(s)	114, 132
HpySE526I	ACGT	1 cut(s)	70
KspI	CCGCGG	2 cut(s)	79, 174
Kzo9I	GATC	1 cut(s)	25
LpnPI	CCDG	4 cut(s)	42, 366, 375, 379
Lsp1109I	GCAGC	3 cut(s)	169, 190, 343
MaeI	CTAG	1 cut(s)	291
MaeII	ACGT	1 cut(s)	70
MaeIII	GTNAC	1 cut(s)	71
MalI	GATC	1 cut(s)	27
MboI	GATC	1 cut(s)	25
MflI	RGATCY	1 cut(s)	25
MhlI	GDGCHC	1 cut(s)	145
MluCI	AATT	2 cut(s)	211, 238
MnlI	CCTC	6 cut(s)	11, 169, 288, 297, 430, 451
MroXI	GAANNNNTTC	1 cut(s)	9
MseI	TTAA	2 cut(s)	210, 215
MspA1I	CMGCKG	3 cut(s)	78, 173, 356
MspI	CCGG	1 cut(s)	362
MspR9I	CCNGG	1 cut(s)	363
MvnI	CGCG	2 cut(s)	78, 173
MwoI	GCNNNNNNNGC	2 cut(s)	179, 188
NciI	CCSGG	1 cut(s)	363
NdeII	GATC	1 cut(s)	25
NlaIV	GGNNCC	2 cut(s)	27, 83
PdmI	GAANNNNTTC	1 cut(s)	9
PfeI	GAWTC	1 cut(s)	294
PkrI	GCNGC	4 cut(s)	184, 205, 355, 358
PpuMI	RGGWCCY	1 cut(s)	439
Psp5II	RGGWCCY	1 cut(s)	439
PspN4I	GGNNCC	2 cut(s)	27, 83
PspPI	GGNCC	2 cut(s)	82, 439
PspPPI	RGGWCCY	1 cut(s)	439
PsuI	RGATCY	1 cut(s)	25
RsaI	GTAC	3 cut(s)	69, 160, 416
RsaNI	GTAC	3 cut(s)	68, 159, 415
SacII	CCGCGG	2 cut(s)	79, 174
SaqAI	TTAA	2 cut(s)	210, 215
SatI	GCNGC	4 cut(s)	183, 204, 354, 357
Sau3AI	GATC	1 cut(s)	25
Sau96I	GGNCC	2 cut(s)	82, 439
ScaI	AGTACT	1 cut(s)	416
ScrFI	CCNGG	1 cut(s)	363
SduI	GDGCHC	1 cut(s)	145
SetI	ASST	5 cut(s)	12, 73, 142, 184, 444
Sfr303I	CCGCGG	2 cut(s)	79, 174
SgrBI	CCGCGG	2 cut(s)	79, 174
SinI	GGWCC	2 cut(s)	82, 439
SmlI	CTYRAG	1 cut(s)	261
SmoI	CTYRAG	1 cut(s)	261
Sse9I	AATT	2 cut(s)	211, 238
SsiI	CCGC	5 cut(s)	76, 78, 171, 173, 354
SspMI	CTAG	1 cut(s)	291
StyD4I	CCNGG	1 cut(s)	361
TaiI	ACGT	1 cut(s)	73
TaqI	TCGA	1 cut(s)	299
TasI	AATT	2 cut(s)	211, 238
TatI	WGTACW	1 cut(s)	414
TauI	GCSGC	1 cut(s)	356
TfiI	GAWTC	1 cut(s)	294
Tru1I	TTAA	2 cut(s)	210, 215
Tru9I	TTAA	2 cut(s)	210, 215
TseI	GCWGC	3 cut(s)	182, 203, 356
TspDTI	ATGAA	4 cut(s)	315, 330, 363, 468
VpaK11BI	GGWCC	2 cut(s)	82, 439
XapI	RAATTY	1 cut(s)	238
XmnI	GAANNNNTTC	1 cut(s)	9
XspI	CTAG	1 cut(s)	291
ZrmI	AGTACT	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.