AT3G23350

ENTH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013320
Physical Location & Seq
Forward (+)
8354077 .. 8355410
1334 bp
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UTR
Exon/CDS
Intron
AT3G23350.1

Sequence Viewer

Length: 846 bp
ATGGGGACACTTTGGTTTGGAGATTTCAAGAAACAAGCCTCTTCGTTTATTCAAGACAAGTACAATGTTGCTAGACTTGTCCTCACCGATGTTACCGAAGCTGAGTTGTTAGTAGAAGAAGTAACAAATGGTGATCCTTCTTCACCAGACGCTAAAACGATGACGAAAATAGCCGAGGCATCGTTTGATACCGTGGAGTATTGGAGAATTGTGGATGTTCTTCATAGAAAGATTGGGAAAGATGAAAGAGAGATAAAGAATTGGAGAGAAGCGTACAAGGCAATGGTGTTGTTGGAGTTCTTACTAATGCATGGACCTATTCATTTACCTCATGATTTTCTTTATGATTTGGATCATTTTCGATTCCTCTCCACTTTCCAATACGTTGACAATAATGGGTTTGATTGGGGAGCTCAAGTTCAAAAAAAGGCAGATCAAATTCAAACACTTCTATTAGGGAAAGAAGAATTAAGAGAAGCTCGTCTTAAAGCTCTCAAAATCACTTCCCAAATCAATGGCTTTGGTAACTCCACCACATTTTCTCCTTCTCCTAATTCTCTATCTAACTCCTTCTCTTCCTTGAAAACCTCCAATTCAACACCAACCAAAAGAATTGATCTTATATCCGAGTCATATTCGTTAATCGACGACGAAAACAAGCTCTCGGAGAAGGATCAAGCCAGCAAAGAGACGCTAGTCAGCGGAATCTGCACAAAACTCGCCGGATTTAGCCCTTTGAACAAGTTTCAAGGCGGTCGTACTAAGGCGGCAAAATTTCAAACTTTGTCTAACGTTGAGAGAGTTTCAAGTAAATGTTACGATCGTTGCAATTCTATTGGTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
ENTH

Protein Analysis

281

Amino Acids

31.79

Weight (kDa)

6.54

Isoelectric Point (pI)

26.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ENTH PF01417 32 - 156 2.2e-32 ENTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013320)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23350 AT3G23350
fragaria_vesca FvH4_4g03870
malus_domestica MD13G1215900.v1.1
prunus_persica Prupe.1G041000_v2.0.a1 Prupe.1G041000_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393891
rosa_laevigata RLG00000009729
rosa_multiflora Rmu_sc0000928.1_g000029
rosa_roxburghii Rroxscaffold_5G00338970
rosa_rugosa Rorug03G0371200 Rorug03G0371200
rosa_samantha Rh4AG049300 Rh4BG045600 Rh4BG045700 Rh4CG052800 Rh4DG046300
rosa_wichuraiana Rw4G003900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 702, 753, 767
AclI AACGTT 1 cut(s) 792
AclWI GGATC 3 cut(s) 128, 360, 681
AcsI RAATTY 2 cut(s) 438, 773
AfaI GTAC 3 cut(s) 62, 275, 760
AloI GAACNNNNNNTCC 2 cut(s) 402, 434
AluBI AGCT 5 cut(s) 101, 413, 479, 491, 661
AluI AGCT 5 cut(s) 101, 413, 479, 491, 661
Alw21I GWGCWC 1 cut(s) 415
Alw26I GTCTC 1 cut(s) 683
AlwI GGATC 3 cut(s) 128, 360, 681
ApoI RAATTY 2 cut(s) 438, 773
AspS9I GGNCC 1 cut(s) 314
AsuHPI GGTGA 3 cut(s) 76, 135, 143
AvaII GGWCC 1 cut(s) 314
BanII GRGCYC 1 cut(s) 415
Bbv12I GWGCWC 1 cut(s) 415
BcgI CGANNNNNNTGC 2 cut(s) 700, 734
BcoDI GTCTC 1 cut(s) 683
BfaI CTAG 2 cut(s) 72, 695
BisI GCNGC 1 cut(s) 768
BlsI GCNGC 1 cut(s) 769
Bme18I GGWCC 1 cut(s) 314
BmgT120I GGNCC 1 cut(s) 314
BmsI GCATC 1 cut(s) 188
BoxI GACNNNNGTC 1 cut(s) 695
BpuEI CTTGAG 1 cut(s) 399
BsaBI GATNNNNATC 1 cut(s) 351
BsaJI CCNNGG 2 cut(s) 174, 192
BsaXI ACNNNNNCTCC 4 cut(s) 402, 432, 526, 556
Bse3DI GCAATG 1 cut(s) 288
Bse8I GATNNNNATC 1 cut(s) 351
BseDI CCNNGG 2 cut(s) 174, 192
BseGI GGATG 1 cut(s) 220
BseJI GATNNNNATC 1 cut(s) 351
BseMI GCAATG 1 cut(s) 288
BseMII CTCAG 1 cut(s) 93
BsgI GTGCAG 1 cut(s) 694
Bsh1285I CGRYCG 2 cut(s) 757, 823
BsiEI CGRYCG 2 cut(s) 757, 823
BsiHKAI GWGCWC 1 cut(s) 415
BsiSI CCGG 1 cut(s) 723
BslFI GGGAC 1 cut(s) 19
BsmAI GTCTC 1 cut(s) 683
BsmBI CGTCTC 1 cut(s) 683
BsmFI GGGAC 1 cut(s) 19
Bsp1286I GDGCHC 1 cut(s) 415
Bsp143I GATC 6 cut(s) 133, 352, 433, 616, 673, 820
BspACI CCGC 3 cut(s) 702, 753, 767
BspCNI CTCAG 1 cut(s) 94
BspHI TCATGA 1 cut(s) 331
BspPI GGATC 3 cut(s) 128, 360, 681
BsrDI GCAATG 1 cut(s) 288
BssECI CCNNGG 2 cut(s) 174, 192
BssMI GATC 6 cut(s) 133, 352, 433, 616, 673, 820
Bst4CI ACNGT 1 cut(s) 193
Bst6I CTCTTC 2 cut(s) 46, 580
BstC8I GCNNGC 1 cut(s) 682
BstDEI CTNAG 2 cut(s) 102, 762
BstDSI CCRYGG 1 cut(s) 192
BstF5I GGATG 1 cut(s) 220
BstKTI GATC 6 cut(s) 136, 355, 436, 619, 676, 823
BstMAI GTCTC 1 cut(s) 683
BstMBI GATC 6 cut(s) 133, 352, 433, 616, 673, 820
BstMCI CGRYCG 2 cut(s) 757, 823
BstMWI GCNNNNNNNGC 2 cut(s) 278, 708
BstPAI GACNNNNGTC 1 cut(s) 695
BstXI CCANNNNNNTGG 1 cut(s) 515
BtgI CCRYGG 1 cut(s) 192
BtsCI GGATG 1 cut(s) 220
Cac8I GCNNGC 1 cut(s) 682
CciI TCATGA 1 cut(s) 331
Cfr13I GGNCC 1 cut(s) 314
CseI GACGC 2 cut(s) 158, 700
Csp6I GTAC 3 cut(s) 61, 274, 759
CviAII CATG 2 cut(s) 311, 332
CviQI GTAC 3 cut(s) 61, 274, 759
DdeI CTNAG 2 cut(s) 102, 762
DpnI GATC 6 cut(s) 135, 354, 435, 618, 675, 822
DpnII GATC 6 cut(s) 133, 352, 433, 616, 673, 820
Eam1104I CTCTTC 2 cut(s) 46, 580
EarI CTCTTC 2 cut(s) 46, 580
Ecl136II GAGCTC 1 cut(s) 413
Eco24I GRGCYC 1 cut(s) 415
Eco47I GGWCC 1 cut(s) 314
Eco53kI GAGCTC 1 cut(s) 413
EcoICRI GAGCTC 1 cut(s) 413
EcoT22I ATGCAT 1 cut(s) 312
EcoT38I GRGCYC 1 cut(s) 415
Esp3I CGTCTC 1 cut(s) 683
FaeI CATG 2 cut(s) 314, 335
FaiI YATR 6 cut(s) 225, 312, 333, 345, 623, 634
FalI AAGNNNNNCTT 2 cut(s) 468, 500
FaqI GGGAC 1 cut(s) 19
FatI CATG 2 cut(s) 310, 331
Fnu4HI GCNGC 1 cut(s) 768
FokI GGATG 1 cut(s) 227
FriOI GRGCYC 1 cut(s) 415
Fsp4HI GCNGC 1 cut(s) 768
FspBI CTAG 2 cut(s) 72, 695
GluI GCNGC 1 cut(s) 768
HapII CCGG 1 cut(s) 723
HgaI GACGC 2 cut(s) 158, 700
Hin1II CATG 2 cut(s) 314, 335
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HinfI GANTC 3 cut(s) 363, 629, 705
HpaII CCGG 1 cut(s) 723
HphI GGTGA 3 cut(s) 76, 135, 143
Hpy166II GTNNAC 1 cut(s) 388
Hpy188I TCNGA 2 cut(s) 628, 667
Hpy188III TCNNGA 3 cut(s) 28, 53, 332
Hpy8I GTNNAC 1 cut(s) 388
Hpy99I CGWCG 2 cut(s) 650, 653
HpyAV CCTTC 4 cut(s) 147, 555, 580, 664
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4IV ACGT 2 cut(s) 384, 792
HpyCH4V TGCA 3 cut(s) 310, 711, 828
HpyF10VI GCNNNNNNNGC 2 cut(s) 278, 708
HpyF3I CTNAG 2 cut(s) 102, 762
HpySE526I ACGT 2 cut(s) 384, 792
Hsp92II CATG 2 cut(s) 314, 335
Kzo9I GATC 6 cut(s) 133, 352, 433, 616, 673, 820
LmnI GCTCC 1 cut(s) 410
LpnPI CCDG 3 cut(s) 159, 694, 736
LweI GCATC 1 cut(s) 188
MaeI CTAG 2 cut(s) 72, 695
MaeII ACGT 2 cut(s) 384, 792
MaeIII GTNAC 5 cut(s) 91, 121, 524, 815, 839
MalI GATC 6 cut(s) 135, 354, 435, 618, 675, 822
MboI GATC 6 cut(s) 133, 352, 433, 616, 673, 820
MboII GAAGA 6 cut(s) 33, 128, 132, 212, 476, 567
MhlI GDGCHC 1 cut(s) 415
MluCI AATT 9 cut(s) 207, 259, 438, 467, 553, 592, 612, 773, 829
MlyI GAGTC 1 cut(s) 638
MmeI TCCRAC 1 cut(s) 273
MnlI CCTC 6 cut(s) 49, 92, 169, 339, 377, 598
Mph1103I ATGCAT 1 cut(s) 312
MseI TTAA 3 cut(s) 470, 486, 641
MspA1I CMGCKG 1 cut(s) 702
MspI CCGG 1 cut(s) 723
MwoI GCNNNNNNNGC 2 cut(s) 278, 708
NdeII GATC 6 cut(s) 133, 352, 433, 616, 673, 820
NlaIII CATG 2 cut(s) 314, 335
NmeAIII GCCGAG 1 cut(s) 199
NsiI ATGCAT 1 cut(s) 312
PagI TCATGA 1 cut(s) 331
PfeI GAWTC 2 cut(s) 363, 705
PkrI GCNGC 1 cut(s) 769
Ple19I CGATCG 1 cut(s) 823
PleI GAGTC 1 cut(s) 637
PpsI GAGTC 1 cut(s) 637
PshAI GACNNNNGTC 1 cut(s) 695
Psp124BI GAGCTC 1 cut(s) 415
Psp1406I AACGTT 1 cut(s) 792
PspPI GGNCC 1 cut(s) 314
PvuI CGATCG 1 cut(s) 823
RsaI GTAC 3 cut(s) 62, 275, 760
RsaNI GTAC 3 cut(s) 61, 274, 759
SacI GAGCTC 1 cut(s) 415
SaqAI TTAA 3 cut(s) 470, 486, 641
SatI GCNGC 1 cut(s) 768
Sau3AI GATC 6 cut(s) 133, 352, 433, 616, 673, 820
Sau96I GGNCC 1 cut(s) 314
SchI GAGTC 1 cut(s) 638
SduI GDGCHC 1 cut(s) 415
SfaNI GCATC 1 cut(s) 188
SinI GGWCC 1 cut(s) 314
SmlI CTYRAG 1 cut(s) 414
SmoI CTYRAG 1 cut(s) 414
Sse9I AATT 9 cut(s) 207, 259, 438, 467, 553, 592, 612, 773, 829
SsiI CCGC 3 cut(s) 702, 753, 767
SspMI CTAG 2 cut(s) 72, 695
SstI GAGCTC 1 cut(s) 415
TaaI ACNGT 1 cut(s) 193
TaiI ACGT 2 cut(s) 387, 795
TaqI TCGA 2 cut(s) 361, 645
TasI AATT 9 cut(s) 207, 259, 438, 467, 553, 592, 612, 773, 829
TatI WGTACW 1 cut(s) 60
TauI GCSGC 1 cut(s) 770
TfiI GAWTC 2 cut(s) 363, 705
Tru1I TTAA 3 cut(s) 470, 486, 641
Tru9I TTAA 3 cut(s) 470, 486, 641
TspDTI ATGAA 3 cut(s) 212, 258, 311
VpaK11BI GGWCC 1 cut(s) 314
XapI RAATTY 2 cut(s) 438, 773
XspI CTAG 2 cut(s) 72, 695
Zsp2I ATGCAT 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.