Rorug03G0371200

ENTH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0013320
Physical Location & Seq
Reverse (-)
45461718 .. 45475692
13975 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0371200.1

Sequence Viewer

Length: 930 bp
ATGCAACAGCAAATTGACGAACTGAAAGTACTAGTGAAGGAAGAAGTTTTCGCATCATATGATGTTTCATATCAGTTGAAATTAATTGATGAAATCCAACGCCTAGGTGTGGCATACCATTTTGAAACAGAAATAGATGAAGCACTAGAAAATATCTATGTTAAATACCATGATGATGGTGATCTGGACCTATACAATGTTTCTCTTCGTTTTCGTCTACTAAGACAAAATGGATATAATGTTTCATCTGCAGATATATTCAGCAAATTTAAAGATGTAAACAGTTACTTCAAGGAGAGCTTAATTGCTGATATCTTAGCTATCATATGCTTGTATGAGGCAACACATCTTAGGGTTCATGGAGAAGAAATACTAGAAGAAGCTCTTGTTTTCACCACCACCCACCTTGAATTGGCGATAAGTGGTGTAAGCTATCCACTAGCTGCAAAAATATATCAAGCCCTAGAGAGGCCTCTGCGTAAAGGTCTAGAGAGGTTATGTACCAGGAATTACATACCAATCTACGAAGCCACGACTCCGCATAACGAAGCGCTACTGAAACTTGCGAAGTTAGATTTCAATCTGGTTCAATCTTTGCACAAAGAGGAGCTTAGTGAGGTTTCAAGGTGGGGGAAAGAACTAGGCTTTGAAAAGAATCTTCCTTTTGTAAGGTATAGGATTGTGGAGTGTTTCTTTTGGATGGTGGGAATGTATTTTGAACCCCGATACTCGGTTGGAAGAATAATCGGAACAAAACTGTGTGTTCTAGCTACAATTTTGGATGATATATTTGATGCATGTGGTACACTTGAAGAACTCAAGATATTTCGTGAAGCAGTTGACAGGTACGAAGCCAATCTGTCGACCTCACTTGCAAATAGAGTGCAAACTACATTGTGCTTTACAATCAATGACGACATATGTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
ENTH

Protein Analysis

309

Amino Acids

35.8

Weight (kDa)

4.99

Isoelectric Point (pI)

32.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 1 - 155 2e-47 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 212 - 298 6.3e-29 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 252 - 299 3e-06 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013320)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23350 AT3G23350
fragaria_vesca FvH4_4g03870
malus_domestica MD13G1215900.v1.1
prunus_persica Prupe.1G041000_v2.0.a1 Prupe.1G041000_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393891
rosa_laevigata RLG00000009729
rosa_multiflora Rmu_sc0000928.1_g000029
rosa_roxburghii Rroxscaffold_5G00338970
rosa_rugosa Rorug03G0371200 Rorug03G0371200
rosa_samantha Rh4AG049300 Rh4BG045600 Rh4BG045700 Rh4CG052800 Rh4DG046300
rosa_wichuraiana Rw4G003900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 217, 863
AciI CCGC 1 cut(s) 539
AcsI RAATTY 1 cut(s) 266
AfaI GTAC 4 cut(s) 30, 502, 805, 848
AfeI AGCGCT 1 cut(s) 552
AfiI CCNNNNNNNGG 4 cut(s) 109, 412, 468, 730
AhlI ACTAGT 1 cut(s) 31
AjnI CCWGG 1 cut(s) 503
AluBI AGCT 7 cut(s) 300, 320, 383, 432, 443, 610, 770
AluI AGCT 7 cut(s) 300, 320, 383, 432, 443, 610, 770
Aor51HI AGCGCT 1 cut(s) 552
AoxI GGCC 1 cut(s) 470
ApeKI GCWGC 1 cut(s) 443
ApoI RAATTY 1 cut(s) 266
AseI ATTAAT 1 cut(s) 83
AspA2I CCTAGG 1 cut(s) 103
AspLEI GCGC 1 cut(s) 553
AspS9I GGNCC 1 cut(s) 187
AsuHPI GGTGA 2 cut(s) 191, 385
AvaII GGWCC 1 cut(s) 187
AvrII CCTAGG 1 cut(s) 103
BbvI GCAGC 1 cut(s) 430
BccI CCATC 2 cut(s) 170, 694
BciT130I CCWGG 1 cut(s) 505
BcuI ACTAGT 1 cut(s) 31
BfaI CTAG 9 cut(s) 32, 104, 146, 374, 440, 464, 488, 641, 767
BfmI CTRYAG 1 cut(s) 249
BfoI RGCGCY 1 cut(s) 554
BisI GCNGC 1 cut(s) 444
BlnI CCTAGG 1 cut(s) 103
BlsI GCNGC 1 cut(s) 445
BmcAI AGTACT 1 cut(s) 30
Bme1390I CCNGG 1 cut(s) 505
Bme18I GGWCC 1 cut(s) 187
BmgT120I GGNCC 1 cut(s) 187
BmrFI CCNGG 1 cut(s) 505
BmsI GCATC 2 cut(s) 62, 784
BoxI GACNNNNGTC 1 cut(s) 921
BpuEI CTTGAG 1 cut(s) 803
BsaBI GATNNNNATC 2 cut(s) 180, 579
BsaJI CCNNGG 1 cut(s) 103
Bsc4I CCNNNNNNNGG 4 cut(s) 109, 412, 468, 730
Bse8I GATNNNNATC 2 cut(s) 180, 579
BseBI CCWGG 1 cut(s) 505
BseDI CCNNGG 1 cut(s) 103
BseGI GGATG 2 cut(s) 705, 787
BseJI GATNNNNATC 2 cut(s) 180, 579
BseLI CCNNNNNNNGG 4 cut(s) 109, 412, 468, 730
BseRI GAGGAG 1 cut(s) 620
BseXI GCAGC 1 cut(s) 430
BshFI GGCC 1 cut(s) 472
BslI CCNNNNNNNGG 4 cut(s) 109, 412, 468, 730
BsnI GGCC 1 cut(s) 472
Bsp143I GATC 1 cut(s) 181
BspACI CCGC 1 cut(s) 539
BspANI GGCC 1 cut(s) 472
BspMAI CTGCAG 1 cut(s) 253
BssECI CCNNGG 1 cut(s) 103
BssMI GATC 1 cut(s) 181
BssT1I CCWWGG 1 cut(s) 103
Bst2UI CCWGG 1 cut(s) 505
Bst4CI ACNGT 2 cut(s) 284, 759
Bst6I CTCTTC 1 cut(s) 210
BstDEI CTNAG 4 cut(s) 221, 316, 350, 611
BstF5I GGATG 2 cut(s) 705, 787
BstH2I RGCGCY 1 cut(s) 554
BstHHI GCGC 1 cut(s) 553
BstKTI GATC 1 cut(s) 184
BstMBI GATC 1 cut(s) 181
BstNI CCWGG 1 cut(s) 505
BstNSI RCATGY 1 cut(s) 801
BstPAI GACNNNNGTC 1 cut(s) 921
BstSCI CCNGG 1 cut(s) 503
BstSFI CTRYAG 1 cut(s) 249
BstV1I GCAGC 1 cut(s) 430
BstXI CCANNNNNNTGG 1 cut(s) 176
BsuRI GGCC 1 cut(s) 472
BtsCI GGATG 2 cut(s) 705, 787
CfoI GCGC 1 cut(s) 553
Cfr13I GGNCC 1 cut(s) 187
Csp6I GTAC 4 cut(s) 29, 501, 804, 847
CspCI CAANNNNNGTGG 2 cut(s) 388, 423
CviAII CATG 3 cut(s) 170, 359, 798
CviQI GTAC 4 cut(s) 29, 501, 804, 847
DdeI CTNAG 4 cut(s) 221, 316, 350, 611
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
DraI TTTAAA 1 cut(s) 271
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
Eco130I CCWWGG 1 cut(s) 103
Eco147I AGGCCT 1 cut(s) 472
Eco32I GATATC 1 cut(s) 313
Eco47I GGWCC 1 cut(s) 187
Eco47III AGCGCT 1 cut(s) 552
EcoRII CCWGG 1 cut(s) 503
EcoRV GATATC 1 cut(s) 313
EcoT14I CCWWGG 1 cut(s) 103
EcoT22I ATGCAT 1 cut(s) 799
ErhI CCWWGG 1 cut(s) 103
FaeI CATG 3 cut(s) 173, 362, 801
FalI AAGNNNNNCTT 6 cut(s) 284, 316, 369, 401, 594, 626
FatI CATG 3 cut(s) 169, 358, 797
FauNDI CATATG 3 cut(s) 58, 326, 920
FblI GTMKAC 2 cut(s) 217, 863
Fnu4HI GCNGC 1 cut(s) 444
FokI GGATG 2 cut(s) 712, 794
Fsp4HI GCNGC 1 cut(s) 444
FspBI CTAG 9 cut(s) 32, 104, 146, 374, 440, 464, 488, 641, 767
GlaI GCGC 1 cut(s) 552
GluI GCNGC 1 cut(s) 444
HaeII RGCGCY 1 cut(s) 554
HaeIII GGCC 1 cut(s) 472
HhaI GCGC 1 cut(s) 553
Hin1II CATG 3 cut(s) 173, 362, 801
Hin6I GCGC 1 cut(s) 551
HinP1I GCGC 1 cut(s) 551
HincII GTYRAC 2 cut(s) 841, 864
HindII GTYRAC 2 cut(s) 841, 864
HinfI GANTC 2 cut(s) 535, 655
HphI GGTGA 2 cut(s) 191, 385
Hpy166II GTNNAC 5 cut(s) 218, 280, 806, 841, 864
Hpy188I TCNGA 1 cut(s) 749
Hpy188III TCNNGA 4 cut(s) 185, 488, 820, 830
Hpy8I GTNNAC 5 cut(s) 218, 280, 806, 841, 864
HpyAV CCTTC 1 cut(s) 31
HpyCH4III ACNGT 2 cut(s) 284, 759
HpyCH4V TGCA 7 cut(s) 4, 251, 446, 598, 797, 875, 886
HpyF3I CTNAG 4 cut(s) 221, 316, 350, 611
Hsp92II CATG 3 cut(s) 173, 362, 801
HspAI GCGC 1 cut(s) 551
Kzo9I GATC 1 cut(s) 181
LmnI GCTCC 1 cut(s) 607
LpnPI CCDG 5 cut(s) 170, 490, 517, 569, 829
Lsp1109I GCAGC 1 cut(s) 430
LweI GCATC 2 cut(s) 62, 784
MaeI CTAG 9 cut(s) 32, 104, 146, 374, 440, 464, 488, 641, 767
MaeIII GTNAC 1 cut(s) 284
MalI GATC 1 cut(s) 183
MboI GATC 1 cut(s) 181
MboII GAAGA 7 cut(s) 53, 197, 377, 389, 650, 750, 824
MluCI AATT 8 cut(s) 12, 80, 84, 266, 303, 410, 508, 774
MlyI GAGTC 1 cut(s) 529
MmeI TCCRAC 2 cut(s) 121, 715
MnlI CCTC 7 cut(s) 331, 462, 483, 486, 598, 610, 877
Mph1103I ATGCAT 1 cut(s) 799
MseI TTAA 5 cut(s) 83, 162, 270, 302, 928
MslI CAYNNNNRTG 1 cut(s) 174
MspR9I CCNGG 1 cut(s) 505
MvaI CCWGG 1 cut(s) 505
NdeI CATATG 3 cut(s) 58, 326, 920
NdeII GATC 1 cut(s) 181
NlaIII CATG 3 cut(s) 173, 362, 801
NsiI ATGCAT 1 cut(s) 799
NspI RCATGY 1 cut(s) 801
PceI AGGCCT 1 cut(s) 472
PfeI GAWTC 1 cut(s) 655
PkrI GCNGC 1 cut(s) 445
PleI GAGTC 1 cut(s) 529
PpsI GAGTC 1 cut(s) 529
PshAI GACNNNNGTC 1 cut(s) 921
PshBI ATTAAT 1 cut(s) 83
Psp6I CCWGG 1 cut(s) 503
PspGI CCWGG 1 cut(s) 503
PspPI GGNCC 1 cut(s) 187
PsrI GAACNNNNNNTAC 2 cut(s) 12, 44
PstI CTGCAG 1 cut(s) 253
RsaI GTAC 4 cut(s) 30, 502, 805, 848
RsaNI GTAC 4 cut(s) 29, 501, 804, 847
RseI CAYNNNNRTG 1 cut(s) 174
SalI GTCGAC 1 cut(s) 862
SaqAI TTAA 5 cut(s) 83, 162, 270, 302, 928
SatI GCNGC 1 cut(s) 444
Sau3AI GATC 1 cut(s) 181
Sau96I GGNCC 1 cut(s) 187
ScaI AGTACT 1 cut(s) 30
SchI GAGTC 1 cut(s) 529
ScrFI CCNGG 1 cut(s) 505
SfaNI GCATC 2 cut(s) 62, 784
SfcI CTRYAG 1 cut(s) 249
SinI GGWCC 1 cut(s) 187
SmiMI CAYNNNNRTG 1 cut(s) 174
SmlI CTYRAG 1 cut(s) 818
SmoI CTYRAG 1 cut(s) 818
SpeI ACTAGT 1 cut(s) 31
Sse9I AATT 8 cut(s) 12, 80, 84, 266, 303, 410, 508, 774
SseBI AGGCCT 1 cut(s) 472
SsiI CCGC 1 cut(s) 539
SspMI CTAG 9 cut(s) 32, 104, 146, 374, 440, 464, 488, 641, 767
StuI AGGCCT 1 cut(s) 472
StyD4I CCNGG 1 cut(s) 503
StyI CCWWGG 1 cut(s) 103
TaaI ACNGT 2 cut(s) 284, 759
TaqI TCGA 1 cut(s) 863
TasI AATT 8 cut(s) 12, 80, 84, 266, 303, 410, 508, 774
TatI WGTACW 1 cut(s) 28
TfiI GAWTC 1 cut(s) 655
Tru1I TTAA 5 cut(s) 83, 162, 270, 302, 928
Tru9I TTAA 5 cut(s) 83, 162, 270, 302, 928
TseI GCWGC 1 cut(s) 443
TspDTI ATGAA 5 cut(s) 57, 105, 153, 234, 347
VpaK11BI GGWCC 1 cut(s) 187
VspI ATTAAT 1 cut(s) 83
XapI RAATTY 1 cut(s) 266
XbaI TCTAGA 1 cut(s) 487
XceI RCATGY 1 cut(s) 801
XmaJI CCTAGG 1 cut(s) 103
XmiI GTMKAC 2 cut(s) 217, 863
XspI CTAG 9 cut(s) 32, 104, 146, 374, 440, 464, 488, 641, 767
ZrmI AGTACT 1 cut(s) 30
Zsp2I ATGCAT 1 cut(s) 799
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.