FvH4_4g03870

ENTH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0013320
Physical Location & Seq
Forward (+)
3387910 .. 3390676
2767 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g03870.t1

Sequence Viewer

Length: 1029 bp
ATGTTCCTGGACCATATTAAGAAGCAGGCCTCTCAATTTTTGCAAGAGAGATACAAAACTGCTAGACTGGCATTCACTGATGTTACTCCTGCTGAACTGTGGGCTGAGGAGGCAACAAATGGTGAACCATGTAGCCCTGATGCTAAGACAATGACCAAATTAGCTGCTGCGTCCTTTGAGATGGAGGACTACTGGAGAATAGTTGACATCCTTCACAGAAAGTTATATAACGTAGATTGGAAAGAATGGAGGCAATCCTACAAAGCATTGGTGCTTCTAGAGTTTTTATTAACACACGGCCCTGTAGACTTTGCTGAGGAATTCCAAGGTGACAGTGAAGTCATCCAAGAGCTGGGATCGTTCAAGTACATTGATGACAGAGGATTCGATTGGGGTTCTTGCATGCAAAAGAAATCGGACCAAATACTAGTCCTTCTCAGAGGGGGACCGACGCTGAGAGAGGCTCGTTACAAAGCTCTCAAATTAACAAATGAAATCCAAGGCTTTGGAAGTTCAGTGTCTTCTCCTTCATGCTCAAGCACTCCTTCCTCTGCTTACTCGGAAACACCGAGAGCTTCATCCTTTAGCTCATTTTCTACCACAAGTTCTATATGGAGCGAATTGAGCAACGAGCTTTTCAAGTCTCATCAACAATCCCCAACTAAATCAGAAGCCATGGAAAGCTATTCACCGGTTGGACTGCGAGACCGATATGATGATCATGATCGTTATGAGAACACTAGCAATTTCCCAGCAACAAGTAAAGGTAGGGAAGAATCACACATTTGGAACTGCCCTCCAATTGAAGAAAATAGTTCGTTACTTGAATCCGGGGAAGAAGATAGAGACGACGACAAATATTATGAGAAGGATGATGGCCTTATAAGTGGAATTTGCTCAAAGCTGGTTACCCTTAGTCCTAGAAGAGGAAATGGACCTCATAGTAATATTGGATTTAGGAGTGTTTCTGATGTTGGGATGGAGCTGAGGAAGAAAAAGCTTGATCGCCAATCTTCATTTTGGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
ENTH

Protein Analysis

343

Amino Acids

38.99

Weight (kDa)

5.21

Isoelectric Point (pI)

48.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ENTH PF01417 29 - 147 2e-28 ENTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013320)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23350 AT3G23350
fragaria_vesca FvH4_4g03870
malus_domestica MD13G1215900.v1.1
prunus_persica Prupe.1G041000_v2.0.a1 Prupe.1G041000_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393891
rosa_laevigata RLG00000009729
rosa_multiflora Rmu_sc0000928.1_g000029
rosa_roxburghii Rroxscaffold_5G00338970
rosa_rugosa Rorug03G0371200 Rorug03G0371200
rosa_samantha Rh4AG049300 Rh4BG045600 Rh4BG045700 Rh4CG052800 Rh4DG046300
rosa_wichuraiana Rw4G003900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 884
AasI GACNNNNNNGTC 1 cut(s) 338
AccB7I CCANNNNNTGG 1 cut(s) 352
AccI GTMKAC 1 cut(s) 306
AclWI GGATC 1 cut(s) 364
AcsI RAATTY 2 cut(s) 320, 891
AfaI GTAC 1 cut(s) 368
AfiI CCNNNNNNNGG 2 cut(s) 352, 926
AgeI ACCGGT 1 cut(s) 691
AgsI TTSAA 4 cut(s) 364, 640, 806, 827
AhlI ACTAGT 1 cut(s) 427
AjnI CCWGG 1 cut(s) 6
Alw26I GTCTC 3 cut(s) 648, 699, 840
AlwI GGATC 1 cut(s) 364
AoxI GGCC 3 cut(s) 27, 298, 877
ApeKI GCWGC 2 cut(s) 164, 167
ApoI RAATTY 2 cut(s) 320, 891
ArsI GACNNNNNNTTYG 2 cut(s) 368, 400
AsiGI ACCGGT 1 cut(s) 691
AspS9I GGNCC 5 cut(s) 10, 299, 418, 446, 935
AsuC2I CCSGG 1 cut(s) 832
AsuHPI GGTGA 3 cut(s) 134, 341, 681
AvaII GGWCC 4 cut(s) 10, 418, 446, 935
BbsI GAAGAC 1 cut(s) 513
BbvCI CCTCAGC 3 cut(s) 105, 315, 986
BbvI GCAGC 2 cut(s) 151, 154
BccI CCATC 3 cut(s) 175, 869, 973
BceAI ACGGC 1 cut(s) 313
BciT130I CCWGG 1 cut(s) 8
BclI TGATCA 1 cut(s) 718
BcnI CCSGG 1 cut(s) 832
BcoDI GTCTC 3 cut(s) 648, 699, 840
BcuI ACTAGT 1 cut(s) 427
BfaI CTAG 5 cut(s) 63, 278, 428, 741, 921
BfmI CTRYAG 1 cut(s) 303
BisI GCNGC 2 cut(s) 165, 168
BlsI GCNGC 2 cut(s) 166, 169
Bme1390I CCNGG 2 cut(s) 8, 832
Bme18I GGWCC 4 cut(s) 10, 418, 446, 935
BmgT120I GGNCC 5 cut(s) 10, 299, 418, 446, 935
BmiI GGNNCC 1 cut(s) 447
BmrFI CCNGG 2 cut(s) 8, 832
BmsI GCATC 1 cut(s) 130
BpiI GAAGAC 1 cut(s) 513
BplI GAGNNNNNCTC 2 cut(s) 448, 480
BpmI CTGGAG 1 cut(s) 214
Bpu10I CCTNAGC 3 cut(s) 105, 315, 986
BpuEI CTTGAG 1 cut(s) 520
BpuMI CCSGG 1 cut(s) 832
BsaBI GATNNNNATC 1 cut(s) 723
BsaI GGTCTC 1 cut(s) 699
BsaJI CCNNGG 4 cut(s) 325, 499, 675, 831
BsaWI WCCGGW 1 cut(s) 691
Bsc4I CCNNNNNNNGG 2 cut(s) 352, 926
Bse118I RCCGGY 1 cut(s) 691
Bse1I ACTGG 2 cut(s) 72, 197
Bse8I GATNNNNATC 1 cut(s) 723
BseBI CCWGG 1 cut(s) 8
BseDI CCNNGG 4 cut(s) 325, 499, 675, 831
BseGI GGATG 5 cut(s) 207, 342, 578, 877, 984
BseJI GATNNNNATC 1 cut(s) 723
BseLI CCNNNNNNNGG 2 cut(s) 352, 926
BseMII CTCAG 5 cut(s) 96, 306, 446, 451, 977
BseNI ACTGG 2 cut(s) 72, 197
BseRI GAGGAG 1 cut(s) 122
BseXI GCAGC 2 cut(s) 151, 154
BseYI CCCAGC 2 cut(s) 352, 751
BshFI GGCC 3 cut(s) 29, 300, 879
BshTI ACCGGT 1 cut(s) 691
BsiSI CCGG 2 cut(s) 692, 831
BslFI GGGAC 1 cut(s) 459
BslI CCNNNNNNNGG 2 cut(s) 352, 926
BsmAI GTCTC 3 cut(s) 648, 699, 840
BsmBI CGTCTC 1 cut(s) 840
BsmFI GGGAC 1 cut(s) 459
BsmI GAATGC 1 cut(s) 71
BsnI GGCC 3 cut(s) 29, 300, 879
Bso31I GGTCTC 1 cut(s) 699
Bsp143I GATC 4 cut(s) 356, 718, 724, 1003
Bsp19I CCATGG 1 cut(s) 675
BspANI GGCC 3 cut(s) 29, 300, 879
BspCNI CTCAG 5 cut(s) 97, 307, 447, 450, 978
BspHI TCATGA 1 cut(s) 721
BspLI GGNNCC 1 cut(s) 447
BspPI GGATC 1 cut(s) 364
BspTNI GGTCTC 1 cut(s) 699
BsrFI RCCGGY 1 cut(s) 691
BsrI ACTGG 2 cut(s) 72, 197
BssAI RCCGGY 1 cut(s) 691
BssECI CCNNGG 4 cut(s) 325, 499, 675, 831
BssMI GATC 4 cut(s) 356, 718, 724, 1003
BssT1I CCWWGG 3 cut(s) 325, 499, 675
Bst2UI CCWGG 1 cut(s) 8
Bst4CI ACNGT 2 cut(s) 99, 335
Bst6I CTCTTC 1 cut(s) 919
BstC8I GCNNGC 2 cut(s) 27, 404
BstDEI CTNAG 7 cut(s) 105, 144, 315, 437, 455, 914, 986
BstDSI CCRYGG 1 cut(s) 675
BstEII GGTNACC 1 cut(s) 907
BstENI CCTNNNNNAGG 1 cut(s) 924
BstF5I GGATG 5 cut(s) 207, 342, 578, 877, 984
BstKTI GATC 4 cut(s) 359, 721, 727, 1006
BstMAI GTCTC 3 cut(s) 648, 699, 840
BstMBI GATC 4 cut(s) 356, 718, 724, 1003
BstMWI GCNNNNNNNGC 3 cut(s) 68, 110, 624
BstNI CCWGG 1 cut(s) 8
BstNSI RCATGY 1 cut(s) 406
BstPI GGTNACC 1 cut(s) 907
BstSCI CCNGG 2 cut(s) 6, 830
BstSFI CTRYAG 1 cut(s) 303
BstV1I GCAGC 2 cut(s) 151, 154
BstV2I GAAGAC 1 cut(s) 513
BstXI CCANNNNNNTGG 1 cut(s) 506
BsuRI GGCC 3 cut(s) 29, 300, 879
BtgI CCRYGG 1 cut(s) 675
BtsCI GGATG 5 cut(s) 207, 342, 578, 877, 984
BtsIMutI CAGTG 3 cut(s) 75, 340, 522
Cac8I GCNNGC 2 cut(s) 27, 404
CciI TCATGA 1 cut(s) 721
Cfr10I RCCGGY 1 cut(s) 691
Cfr13I GGNCC 5 cut(s) 10, 299, 418, 446, 935
CseI GACGC 2 cut(s) 159, 460
Csp6I GTAC 1 cut(s) 367
CspAI ACCGGT 1 cut(s) 691
CviAII CATG 5 cut(s) 129, 403, 531, 676, 722
CviQI GTAC 1 cut(s) 367
DdeI CTNAG 7 cut(s) 105, 144, 315, 437, 455, 914, 986
DpnI GATC 4 cut(s) 358, 720, 726, 1005
DpnII GATC 4 cut(s) 356, 718, 724, 1003
DrdI GACNNNNNNGTC 1 cut(s) 338
DseDI GACNNNNNNGTC 1 cut(s) 338
Eam1104I CTCTTC 1 cut(s) 919
EarI CTCTTC 1 cut(s) 919
Eco130I CCWWGG 3 cut(s) 325, 499, 675
Eco147I AGGCCT 1 cut(s) 29
Eco31I GGTCTC 1 cut(s) 699
Eco47I GGWCC 4 cut(s) 10, 418, 446, 935
Eco91I GGTNACC 1 cut(s) 907
EcoNI CCTNNNNNAGG 1 cut(s) 924
EcoO65I GGTNACC 1 cut(s) 907
EcoRI GAATTC 1 cut(s) 320
EcoRII CCWGG 1 cut(s) 6
EcoT14I CCWWGG 3 cut(s) 325, 499, 675
ErhI CCWWGG 3 cut(s) 325, 499, 675
Esp3I CGTCTC 1 cut(s) 840
FaeI CATG 5 cut(s) 132, 406, 534, 679, 725
FalI AAGNNNNNCTT 2 cut(s) 529, 561
FaqI GGGAC 1 cut(s) 459
FatI CATG 5 cut(s) 128, 402, 530, 675, 721
FbaI TGATCA 1 cut(s) 718
FblI GTMKAC 1 cut(s) 306
Fnu4HI GCNGC 2 cut(s) 165, 168
FokI GGATG 5 cut(s) 194, 329, 565, 884, 991
Fsp4HI GCNGC 2 cut(s) 165, 168
FspBI CTAG 5 cut(s) 63, 278, 428, 741, 921
GluI GCNGC 2 cut(s) 165, 168
GsaI CCCAGC 2 cut(s) 356, 755
GsuI CTGGAG 1 cut(s) 214
HaeIII GGCC 3 cut(s) 29, 300, 879
HapII CCGG 2 cut(s) 692, 831
HgaI GACGC 2 cut(s) 159, 460
Hin1II CATG 5 cut(s) 132, 406, 534, 679, 725
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HindIII AAGCTT 1 cut(s) 998
HinfI GANTC 3 cut(s) 384, 776, 827
HpaII CCGG 2 cut(s) 692, 831
HphI GGTGA 3 cut(s) 134, 341, 681
Hpy166II GTNNAC 3 cut(s) 125, 205, 307
Hpy188I TCNGA 5 cut(s) 418, 440, 562, 670, 970
Hpy188III TCNNGA 2 cut(s) 278, 722
Hpy8I GTNNAC 3 cut(s) 125, 205, 307
Hpy99I CGWCG 2 cut(s) 454, 854
HpyAV CCTTC 5 cut(s) 221, 443, 537, 555, 862
HpyCH4III ACNGT 2 cut(s) 99, 335
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 3 cut(s) 43, 402, 406
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 110, 624
HpyF3I CTNAG 7 cut(s) 105, 144, 315, 437, 455, 914, 986
HpySE526I ACGT 1 cut(s) 231
Hsp92II CATG 5 cut(s) 132, 406, 534, 679, 725
Ksp22I TGATCA 1 cut(s) 718
Kzo9I GATC 4 cut(s) 356, 718, 724, 1003
LmnI GCTCC 2 cut(s) 615, 982
Lsp1109I GCAGC 2 cut(s) 151, 154
LweI GCATC 1 cut(s) 130
MaeI CTAG 5 cut(s) 63, 278, 428, 741, 921
MaeII ACGT 1 cut(s) 231
MaeIII GTNAC 5 cut(s) 82, 329, 467, 819, 907
MalI GATC 4 cut(s) 358, 720, 726, 1005
MboI GATC 4 cut(s) 356, 718, 724, 1003
MboII GAAGA 8 cut(s) 513, 785, 818, 848, 851, 936, 1003, 1005
MfeI CAATTG 1 cut(s) 801
MluCI AATT 8 cut(s) 35, 158, 320, 482, 620, 745, 801, 891
MmeI TCCRAC 1 cut(s) 676
MseI TTAA 3 cut(s) 18, 290, 485
MspI CCGG 2 cut(s) 692, 831
MspR9I CCNGG 2 cut(s) 8, 832
MunI CAATTG 1 cut(s) 801
Mva1269I GAATGC 1 cut(s) 71
MvaI CCWGG 1 cut(s) 8
MwoI GCNNNNNNNGC 3 cut(s) 68, 110, 624
NciI CCSGG 1 cut(s) 832
NcoI CCATGG 1 cut(s) 675
NdeII GATC 4 cut(s) 356, 718, 724, 1003
NlaIII CATG 5 cut(s) 132, 406, 534, 679, 725
NlaIV GGNNCC 1 cut(s) 447
NmuCI GTSAC 1 cut(s) 329
NspI RCATGY 1 cut(s) 406
PaeI GCATGC 1 cut(s) 406
PagI TCATGA 1 cut(s) 721
PceI AGGCCT 1 cut(s) 29
PcsI WCGNNNNNNNCGW 1 cut(s) 566
PctI GAATGC 1 cut(s) 71
PfeI GAWTC 3 cut(s) 384, 776, 827
PflMI CCANNNNNTGG 1 cut(s) 352
PfoI TCCNGGA 1 cut(s) 6
PinAI ACCGGT 1 cut(s) 691
PkrI GCNGC 2 cut(s) 166, 169
PsiI TTATAA 1 cut(s) 884
Psp6I CCWGG 1 cut(s) 6
PspEI GGTNACC 1 cut(s) 907
PspFI CCCAGC 2 cut(s) 352, 751
PspGI CCWGG 1 cut(s) 6
PspN4I GGNNCC 1 cut(s) 447
PspPI GGNCC 5 cut(s) 10, 299, 418, 446, 935
RsaI GTAC 1 cut(s) 368
RsaNI GTAC 1 cut(s) 367
SaqAI TTAA 3 cut(s) 18, 290, 485
SatI GCNGC 2 cut(s) 165, 168
Sau3AI GATC 4 cut(s) 356, 718, 724, 1003
Sau96I GGNCC 5 cut(s) 10, 299, 418, 446, 935
ScrFI CCNGG 2 cut(s) 8, 832
SfaNI GCATC 1 cut(s) 130
SfcI CTRYAG 1 cut(s) 303
SinI GGWCC 4 cut(s) 10, 418, 446, 935
SmlI CTYRAG 1 cut(s) 535
SmoI CTYRAG 1 cut(s) 535
SpeI ACTAGT 1 cut(s) 427
SphI GCATGC 1 cut(s) 406
Sse9I AATT 8 cut(s) 35, 158, 320, 482, 620, 745, 801, 891
SseBI AGGCCT 1 cut(s) 29
SspI AATATT 2 cut(s) 860, 949
SspMI CTAG 5 cut(s) 63, 278, 428, 741, 921
StuI AGGCCT 1 cut(s) 29
StyD4I CCNGG 2 cut(s) 6, 830
StyI CCWWGG 3 cut(s) 325, 499, 675
TaaI ACNGT 2 cut(s) 99, 335
TaiI ACGT 1 cut(s) 234
TaqI TCGA 1 cut(s) 387
TaqII GACCGA 2 cut(s) 463, 723
TasI AATT 8 cut(s) 35, 158, 320, 482, 620, 745, 801, 891
TatI WGTACW 1 cut(s) 366
TfiI GAWTC 3 cut(s) 384, 776, 827
Tru1I TTAA 3 cut(s) 18, 290, 485
Tru9I TTAA 3 cut(s) 18, 290, 485
TscAI CASTG 3 cut(s) 82, 340, 522
TseFI GTSAC 1 cut(s) 329
TseI GCWGC 2 cut(s) 164, 167
Tsp45I GTSAC 1 cut(s) 329
TspDTI ATGAA 4 cut(s) 507, 519, 567, 1005
TspRI CASTG 3 cut(s) 82, 340, 522
Van91I CCANNNNNTGG 1 cut(s) 352
VpaK11BI GGWCC 4 cut(s) 10, 418, 446, 935
XagI CCTNNNNNAGG 1 cut(s) 924
XapI RAATTY 2 cut(s) 320, 891
XbaI TCTAGA 1 cut(s) 277
XceI RCATGY 1 cut(s) 406
XmiI GTMKAC 1 cut(s) 306
XspI CTAG 5 cut(s) 63, 278, 428, 741, 921
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.