MD13G1215900.v1.1

ENTH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0013320
Physical Location & Seq
Reverse (-)
20498448 .. 20500127
1680 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1215900.v1.1.491

Sequence Viewer

Length: 1026 bp
ATGGGAACCTTGTTTTTGAACCATATCAAAAAGCAAGCATCTAATTTTCTACAGGAGAAATACAAAATTGCTAGGCTGACTTTTACTGATGTTACTCCAACTGAATTGTTAGCTGAGGAAGCAACAAATAATGATCCATATAGCCCTGATGCTAAGACAATGACTAAAATAGCTGATGCCTCCTTTGACGTGGATGACTATTGGAGAATTGTCGATATTCTGCATCGGAGGTTATATAGCATAGATTGGAAAGAGTGGAGGCAATCCTACAAAGCATTAATACTTCTGGAGTTCTTACTAACACATGGCCCTGAAGATTTTGCTGAAGAATTTCAACGTGATAGTTATGTCATCCAAGAGCTTGGATCGTTTAAATACATAGATAATAAAGGATTCAATTGGGGTGTTAGCATGCAAAAGAAATCAGACCAAATACTTAACTTGCTAGGAGGAGGACAAATCCTAAGAGAAGCACGTTTAAAAGCTCTCAAAATAACAAATGAAATCCAAGGATTTGGAAGTGCAACGGCTTCTCCTTCATCAGCAACTTCTTTCTCTTCATCGGCCTCCGAAGCCTCAAGAACATCCTTTGGCTCTTTTTCAACCACAAGTTCTGTATGGAATGATATCAATGAGCTAAGTAGGTCATATGAGCCATCTCCCACAAAATTGGAAGCCATGGAAAGATATTCACCGAGCGGACTGCGCAGCAATGACTATGATAAGGCTTCCAATTTCCTAGAAACCAATGAAAATAGTGAAGGATCACACCTTTGGGATTGTCCTCCAATCGAAGAAAAGGGTTCACTGCTCGAATCTGGGGATGAAGGTGATGCAGAAGATGATGATGAAGATGAGTTTTATGAGAAGGCGCCGGATGGTAATTTGATAAGTGGAATGTTCTCGAAGTTGGTTAACCTTAGCCCTCGTAGATCTCATGGTGAGAAAGTTGGCTTTAGGAGTGTGTCTGATGTGGGAAGGGAGGGGCAGAAAAAGTTTGATCGCCAATCTTCATTTTGGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
ENTH

Protein Analysis

342

Amino Acids

38.6

Weight (kDa)

4.84

Isoelectric Point (pI)

46.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ENTH PF01417 32 - 150 1.8e-33 ENTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013320)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23350 AT3G23350
fragaria_vesca FvH4_4g03870
malus_domestica MD13G1215900.v1.1
prunus_persica Prupe.1G041000_v2.0.a1 Prupe.1G041000_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393891
rosa_laevigata RLG00000009729
rosa_multiflora Rmu_sc0000928.1_g000029
rosa_roxburghii Rroxscaffold_5G00338970
rosa_rugosa Rorug03G0371200 Rorug03G0371200
rosa_samantha Rh4AG049300 Rh4BG045600 Rh4BG045700 Rh4CG052800 Rh4DG046300
rosa_wichuraiana Rw4G003900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 707
AccB1I GGYRCC 1 cut(s) 871
AccBSI CCGCTC 1 cut(s) 699
AciI CCGC 1 cut(s) 699
AclWI GGATC 3 cut(s) 128, 373, 772
AcsI RAATTY 1 cut(s) 329
AcuI CTGAAG 2 cut(s) 333, 345
AcyI GRCGYC 1 cut(s) 872
AgsI TTSAA 4 cut(s) 19, 335, 397, 603
AjiI CACGTC 1 cut(s) 190
AluBI AGCT 5 cut(s) 113, 173, 361, 485, 637
AluI AGCT 5 cut(s) 113, 173, 361, 485, 637
AlwI GGATC 3 cut(s) 128, 373, 772
AoxI GGCC 2 cut(s) 307, 564
ApeKI GCWGC 1 cut(s) 708
ApoI RAATTY 1 cut(s) 329
AseI ATTAAT 1 cut(s) 278
Asp700I GAANNNNTTC 1 cut(s) 330
AspLEI GCGC 2 cut(s) 708, 874
AspS9I GGNCC 1 cut(s) 308
AsuHPI GGTGA 3 cut(s) 684, 842, 953
BanI GGYRCC 1 cut(s) 871
BbvCI CCTCAGC 1 cut(s) 114
BbvI GCAGC 1 cut(s) 720
BccI CCATC 2 cut(s) 664, 872
BceAI ACGGC 1 cut(s) 543
BcgI CGANNNNNNTGC 2 cut(s) 685, 719
BfaI CTAG 3 cut(s) 72, 446, 740
BfmI CTRYAG 1 cut(s) 50
BfoI RGCGCY 1 cut(s) 875
BglII AGATCT 1 cut(s) 932
BisI GCNGC 1 cut(s) 709
BlsI GCNGC 1 cut(s) 710
BmgBI CACGTC 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 308
BmiI GGNNCC 2 cut(s) 7, 873
BmsI GCATC 5 cut(s) 47, 139, 166, 232, 823
BpmI CTGGAG 1 cut(s) 308
Bpu10I CCTNAGC 2 cut(s) 114, 920
BpuEI CTTGAG 1 cut(s) 562
BsaHI GRCGYC 1 cut(s) 872
BsaJI CCNNGG 2 cut(s) 508, 678
BsaXI ACNNNNNCTCC 2 cut(s) 517, 547
Bse3DI GCAATG 1 cut(s) 718
BseDI CCNNGG 2 cut(s) 508, 678
BseGI GGATG 5 cut(s) 199, 351, 584, 829, 883
BseMI GCAATG 1 cut(s) 718
BseMII CTCAG 1 cut(s) 105
BseRI GAGGAG 1 cut(s) 465
BseXI GCAGC 1 cut(s) 720
BshFI GGCC 2 cut(s) 309, 566
BshNI GGYRCC 1 cut(s) 871
BsiSI CCGG 1 cut(s) 875
BsnI GGCC 2 cut(s) 309, 566
Bsp143I GATC 5 cut(s) 133, 365, 764, 932, 1000
Bsp19I CCATGG 1 cut(s) 678
BspACI CCGC 1 cut(s) 699
BspANI GGCC 2 cut(s) 309, 566
BspCNI CTCAG 1 cut(s) 106
BspLI GGNNCC 2 cut(s) 7, 873
BspPI GGATC 3 cut(s) 128, 373, 772
BspT107I GGYRCC 1 cut(s) 871
BsrBI CCGCTC 1 cut(s) 699
BsrDI GCAATG 1 cut(s) 718
BssECI CCNNGG 2 cut(s) 508, 678
BssMI GATC 5 cut(s) 133, 365, 764, 932, 1000
BssNI GRCGYC 1 cut(s) 872
BssT1I CCWWGG 2 cut(s) 508, 678
Bst6I CTCTTC 1 cut(s) 562
BstACI GRCGYC 1 cut(s) 872
BstC8I GCNNGC 2 cut(s) 36, 413
BstDEI CTNAG 5 cut(s) 114, 153, 464, 638, 920
BstDSI CCRYGG 1 cut(s) 678
BstF5I GGATG 5 cut(s) 199, 351, 584, 829, 883
BstH2I RGCGCY 1 cut(s) 875
BstHHI GCGC 2 cut(s) 708, 874
BstKTI GATC 5 cut(s) 136, 368, 767, 935, 1003
BstMBI GATC 5 cut(s) 133, 365, 764, 932, 1000
BstMWI GCNNNNNNNGC 3 cut(s) 119, 572, 705
BstNSI RCATGY 1 cut(s) 415
BstSFI CTRYAG 1 cut(s) 50
BstV1I GCAGC 1 cut(s) 720
BstX2I RGATCY 1 cut(s) 932
BstXI CCANNNNNNTGG 3 cut(s) 362, 515, 670
BstYI RGATCY 1 cut(s) 932
BsuRI GGCC 2 cut(s) 309, 566
BtgI CCRYGG 1 cut(s) 678
BtrI CACGTC 1 cut(s) 190
BtsCI GGATG 5 cut(s) 199, 351, 584, 829, 883
BtsI GCAGTG 1 cut(s) 806
BtsIMutI CAGTG 1 cut(s) 806
Cac8I GCNNGC 2 cut(s) 36, 413
CfoI GCGC 2 cut(s) 708, 874
Cfr13I GGNCC 1 cut(s) 308
CviAII CATG 4 cut(s) 305, 412, 679, 938
DdeI CTNAG 5 cut(s) 114, 153, 464, 638, 920
DinI GGCGCC 1 cut(s) 873
DpnI GATC 5 cut(s) 135, 367, 766, 934, 1002
DpnII GATC 5 cut(s) 133, 365, 764, 932, 1000
DraI TTTAAA 2 cut(s) 373, 480
Eam1104I CTCTTC 1 cut(s) 562
EarI CTCTTC 1 cut(s) 562
Eco130I CCWWGG 2 cut(s) 508, 678
Eco32I GATATC 1 cut(s) 628
Eco57I CTGAAG 2 cut(s) 333, 345
EcoRV GATATC 1 cut(s) 628
EcoT14I CCWWGG 2 cut(s) 508, 678
EgeI GGCGCC 1 cut(s) 873
EheI GGCGCC 1 cut(s) 873
ErhI CCWWGG 2 cut(s) 508, 678
FaeI CATG 4 cut(s) 308, 415, 682, 941
FatI CATG 4 cut(s) 304, 411, 678, 937
FauNDI CATATG 1 cut(s) 649
Fnu4HI GCNGC 1 cut(s) 709
FokI GGATG 5 cut(s) 206, 338, 571, 836, 890
Fsp4HI GCNGC 1 cut(s) 709
FspBI CTAG 3 cut(s) 72, 446, 740
FspI TGCGCA 1 cut(s) 707
GlaI GCGC 2 cut(s) 707, 873
GluI GCNGC 1 cut(s) 709
GsuI CTGGAG 1 cut(s) 308
HaeII RGCGCY 1 cut(s) 875
HaeIII GGCC 2 cut(s) 309, 566
HapII CCGG 1 cut(s) 875
HhaI GCGC 2 cut(s) 708, 874
Hin1I GRCGYC 1 cut(s) 872
Hin1II CATG 4 cut(s) 308, 415, 682, 941
Hin6I GCGC 2 cut(s) 706, 872
HinP1I GCGC 2 cut(s) 706, 872
HincII GTYRAC 1 cut(s) 916
HindII GTYRAC 1 cut(s) 916
HinfI GANTC 2 cut(s) 393, 815
HpaI GTTAAC 1 cut(s) 916
HpaII CCGG 1 cut(s) 875
HphI GGTGA 3 cut(s) 684, 842, 953
Hpy166II GTNNAC 2 cut(s) 806, 916
Hpy188I TCNGA 4 cut(s) 228, 427, 571, 970
Hpy188III TCNNGA 3 cut(s) 287, 579, 904
Hpy8I GTNNAC 2 cut(s) 806, 916
HpyAV CCTTC 5 cut(s) 546, 755, 821, 862, 972
HpyCH4IV ACGT 3 cut(s) 189, 337, 475
HpyCH4V TGCA 4 cut(s) 223, 415, 524, 836
HpyF10VI GCNNNNNNNGC 3 cut(s) 119, 572, 705
HpyF3I CTNAG 5 cut(s) 114, 153, 464, 638, 920
HpySE526I ACGT 3 cut(s) 189, 337, 475
Hsp92I GRCGYC 1 cut(s) 872
Hsp92II CATG 4 cut(s) 308, 415, 682, 941
HspAI GCGC 2 cut(s) 706, 872
KasI GGCGCC 1 cut(s) 871
KspAI GTTAAC 1 cut(s) 916
Kzo9I GATC 5 cut(s) 133, 365, 764, 932, 1000
LpnPI CCDG 6 cut(s) 38, 159, 272, 324, 804, 888
Lsp1109I GCAGC 1 cut(s) 720
LweI GCATC 5 cut(s) 47, 139, 166, 232, 823
MaeI CTAG 3 cut(s) 72, 446, 740
MaeII ACGT 3 cut(s) 189, 337, 475
MaeIII GTNAC 1 cut(s) 91
MalI GATC 5 cut(s) 135, 367, 766, 934, 1002
MbiI CCGCTC 1 cut(s) 699
MboI GATC 5 cut(s) 133, 365, 764, 932, 1000
MboII GAAGA 7 cut(s) 326, 338, 549, 806, 851, 863, 1002
MfeI CAATTG 1 cut(s) 397
MflI RGATCY 1 cut(s) 932
MluCI AATT 9 cut(s) 43, 66, 104, 207, 329, 397, 668, 733, 883
Mly113I GGCGCC 1 cut(s) 872
MmeI TCCRAC 1 cut(s) 122
MroXI GAANNNNTTC 1 cut(s) 330
MseI TTAA 5 cut(s) 278, 372, 438, 479, 915
MspI CCGG 1 cut(s) 875
MunI CAATTG 1 cut(s) 397
MwoI GCNNNNNNNGC 3 cut(s) 119, 572, 705
NarI GGCGCC 1 cut(s) 872
NcoI CCATGG 1 cut(s) 678
NdeI CATATG 1 cut(s) 649
NdeII GATC 5 cut(s) 133, 365, 764, 932, 1000
NlaIII CATG 4 cut(s) 308, 415, 682, 941
NlaIV GGNNCC 2 cut(s) 7, 873
NsbI TGCGCA 1 cut(s) 707
NspI RCATGY 1 cut(s) 415
PaeI GCATGC 1 cut(s) 415
PdmI GAANNNNTTC 1 cut(s) 330
PfeI GAWTC 2 cut(s) 393, 815
PkrI GCNGC 1 cut(s) 710
PluTI GGCGCC 1 cut(s) 875
PshBI ATTAAT 1 cut(s) 278
PspN4I GGNNCC 2 cut(s) 7, 873
PspPI GGNCC 1 cut(s) 308
PsuI RGATCY 1 cut(s) 932
SaqAI TTAA 5 cut(s) 278, 372, 438, 479, 915
SatI GCNGC 1 cut(s) 709
Sau3AI GATC 5 cut(s) 133, 365, 764, 932, 1000
Sau96I GGNCC 1 cut(s) 308
SfaNI GCATC 5 cut(s) 47, 139, 166, 232, 823
SfcI CTRYAG 1 cut(s) 50
SfoI GGCGCC 1 cut(s) 873
SmlI CTYRAG 1 cut(s) 577
SmoI CTYRAG 1 cut(s) 577
SphI GCATGC 1 cut(s) 415
Sse9I AATT 9 cut(s) 43, 66, 104, 207, 329, 397, 668, 733, 883
SsiI CCGC 1 cut(s) 699
SspDI GGCGCC 1 cut(s) 871
SspMI CTAG 3 cut(s) 72, 446, 740
StyI CCWWGG 2 cut(s) 508, 678
TaiI ACGT 3 cut(s) 192, 340, 478
TaqI TCGA 4 cut(s) 213, 792, 813, 905
TasI AATT 9 cut(s) 43, 66, 104, 207, 329, 397, 668, 733, 883
TfiI GAWTC 2 cut(s) 393, 815
Tru1I TTAA 5 cut(s) 278, 372, 438, 479, 915
Tru9I TTAA 5 cut(s) 278, 372, 438, 479, 915
TscAI CASTG 1 cut(s) 813
TseI GCWGC 1 cut(s) 708
TspDTI ATGAA 7 cut(s) 516, 528, 549, 765, 840, 864, 1002
TspRI CASTG 1 cut(s) 813
VspI ATTAAT 1 cut(s) 278
XapI RAATTY 1 cut(s) 329
XceI RCATGY 1 cut(s) 415
XmnI GAANNNNTTC 1 cut(s) 330
XspI CTAG 3 cut(s) 72, 446, 740
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.