Rh4DG046300

ENTH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0013320
Physical Location & Seq
Forward (+)
7566376 .. 7568967
2592 bp
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UTR
Exon/CDS
Intron
Rh4DG046300.1

Sequence Viewer

Length: 879 bp
ATGACTAAAATAGCTGCTGCCTCCTTTGAGATGGAGGACTACTGGAGAATAGTTGACATCCTTCACAGAAAGTTATATAACATTGATTGGAAAGAATGGAGGCAATCCTACAAAGCATTGGTACTTCTGGAGTTTTTATTAACACATGGCCCTGAAGACTTTGCTGAAGAATTTCAAGGTGACAGTGAAGTCATCCAAGAGCTGGGATCATTTAAGTACATTGATGACAAAGGATTCAATTGGGGTTCTAGCATGCAAAAGAAATCGGACCAAATACTAATCCTTCTAAGAGGGGGGCCGACGCTGAGAGAAGCACGTTTCAAAGCTCTCAAATTAACAAATGAAATCCAAGGCTTTAGAGGTTCAGTGTCTTCTCCTTCACCCTCAACTCCTTCCTCTGCCTACTCTGAAACACCAAGAGCTTCATCCTTTAGTTCATTTTCTACCACAAGTTCTGTATGGAATGAATTGAACAATGAGCTTAGCAAATTTCATCAACCATCGACAACTAAATCAGAAGCCATGGAAAGCTATTCACAGGGTGGACTGCGAGACACTGATGATGATCATGATCATTACAAGAATACTAGCAATTTCCCCGCACCAAGTGAGAGTAGGGAAGGATCACACCTTTGGAATTGCCCTCCAATTGAAGAAAAAGGTTCATTACTTGAATCCGAAGAAGAAGACGATGAGGATGATGACAAATATTATGAGAAGGAGGATGGTATTTTAAGTGGAATTTACTCTAAGCTGGTTAACCTTAGTCCTACAAGAGGAAATGGACCTCATGGTAATATTAGGTTTAGGAGTGTTTCTGATGTGGGGAGGGAGCTGAGGAAGAAAAAGCTTGATCGCCAATCTTCGTTTTGGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
ENTH

Protein Analysis

292

Amino Acids

33.4

Weight (kDa)

5.1

Isoelectric Point (pI)

50.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ENTH PF01417 1 - 97 7.2e-23 ENTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013320)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23350 AT3G23350
fragaria_vesca FvH4_4g03870
malus_domestica MD13G1215900.v1.1
prunus_persica Prupe.1G041000_v2.0.a1 Prupe.1G041000_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393891
rosa_laevigata RLG00000009729
rosa_multiflora Rmu_sc0000928.1_g000029
rosa_roxburghii Rroxscaffold_5G00338970
rosa_rugosa Rorug03G0371200 Rorug03G0371200
rosa_samantha Rh4AG049300 Rh4BG045600 Rh4BG045700 Rh4CG052800 Rh4DG046300
rosa_wichuraiana Rw4G003900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 188
AccB7I CCANNNNNTGG 1 cut(s) 202
AciI CCGC 1 cut(s) 600
AclWI GGATC 2 cut(s) 214, 631
AcsI RAATTY 3 cut(s) 170, 488, 741
AcuI CTGAAG 2 cut(s) 174, 186
AdeI CACNNNGTG 2 cut(s) 542, 608
AfaI GTAC 3 cut(s) 123, 218, 875
AfiI CCNNNNNNNGG 2 cut(s) 202, 776
AgsI TTSAA 6 cut(s) 176, 238, 322, 472, 653, 674
AluBI AGCT 9 cut(s) 14, 202, 326, 422, 481, 531, 754, 835, 850
AluI AGCT 9 cut(s) 14, 202, 326, 422, 481, 531, 754, 835, 850
Alw26I GTCTC 1 cut(s) 546
AlwI GGATC 2 cut(s) 214, 631
AoxI GGCC 2 cut(s) 148, 296
ApeKI GCWGC 2 cut(s) 14, 17
ApoI RAATTY 3 cut(s) 170, 488, 741
Asp700I GAANNNNTTC 1 cut(s) 171
AspS9I GGNCC 4 cut(s) 149, 268, 296, 785
AsuHPI GGTGA 2 cut(s) 191, 372
AvaII GGWCC 2 cut(s) 268, 785
BbsI GAAGAC 3 cut(s) 162, 363, 693
BbvCI CCTCAGC 1 cut(s) 836
BbvI GCAGC 1 cut(s) 4
BccI CCATC 3 cut(s) 25, 508, 719
BclI TGATCA 2 cut(s) 565, 571
BcoDI GTCTC 1 cut(s) 546
BfaI CTAG 2 cut(s) 249, 588
BisI GCNGC 2 cut(s) 15, 18
BlpI GCTNAGC 1 cut(s) 482
BlsI GCNGC 2 cut(s) 16, 19
Bme18I GGWCC 2 cut(s) 268, 785
BmgT120I GGNCC 4 cut(s) 149, 268, 296, 785
BmiI GGNNCC 1 cut(s) 297
BpiI GAAGAC 3 cut(s) 162, 363, 693
BpmI CTGGAG 2 cut(s) 64, 149
Bpu10I CCTNAGC 1 cut(s) 836
Bpu1102I GCTNAGC 1 cut(s) 482
BsaBI GATNNNNATC 2 cut(s) 564, 570
BsaJI CCNNGG 2 cut(s) 349, 522
Bsc4I CCNNNNNNNGG 2 cut(s) 202, 776
Bse1I ACTGG 1 cut(s) 47
Bse8I GATNNNNATC 2 cut(s) 564, 570
BseDI CCNNGG 2 cut(s) 349, 522
BseGI GGATG 5 cut(s) 57, 192, 425, 703, 730
BseJI GATNNNNATC 2 cut(s) 564, 570
BseLI CCNNNNNNNGG 2 cut(s) 202, 776
BseMII CTCAG 2 cut(s) 296, 827
BseNI ACTGG 1 cut(s) 47
BseXI GCAGC 1 cut(s) 4
BseYI CCCAGC 1 cut(s) 202
BshFI GGCC 2 cut(s) 150, 298
BslI CCNNNNNNNGG 2 cut(s) 202, 776
BsmAI GTCTC 1 cut(s) 546
BsnI GGCC 2 cut(s) 150, 298
Bsp143I GATC 5 cut(s) 206, 565, 571, 623, 853
Bsp1720I GCTNAGC 1 cut(s) 482
Bsp19I CCATGG 1 cut(s) 522
BspACI CCGC 1 cut(s) 600
BspANI GGCC 2 cut(s) 150, 298
BspCNI CTCAG 2 cut(s) 297, 828
BspHI TCATGA 1 cut(s) 568
BspLI GGNNCC 1 cut(s) 297
BspPI GGATC 2 cut(s) 214, 631
BsrI ACTGG 1 cut(s) 47
BssECI CCNNGG 2 cut(s) 349, 522
BssMI GATC 5 cut(s) 206, 565, 571, 623, 853
BssT1I CCWWGG 2 cut(s) 349, 522
Bst4CI ACNGT 1 cut(s) 185
BstC8I GCNNGC 1 cut(s) 254
BstDEI CTNAG 6 cut(s) 287, 305, 482, 750, 764, 836
BstDSI CCRYGG 1 cut(s) 522
BstENI CCTNNNNNAGG 1 cut(s) 774
BstF5I GGATG 5 cut(s) 57, 192, 425, 703, 730
BstKTI GATC 5 cut(s) 209, 568, 574, 626, 856
BstMAI GTCTC 1 cut(s) 546
BstMBI GATC 5 cut(s) 206, 565, 571, 623, 853
BstNSI RCATGY 1 cut(s) 256
BstV1I GCAGC 1 cut(s) 4
BstV2I GAAGAC 3 cut(s) 162, 363, 693
BsuRI GGCC 2 cut(s) 150, 298
BtgI CCRYGG 1 cut(s) 522
BtsCI GGATG 5 cut(s) 57, 192, 425, 703, 730
BtsIMutI CAGTG 3 cut(s) 190, 372, 555
Cac8I GCNNGC 1 cut(s) 254
CciI TCATGA 1 cut(s) 568
Cfr13I GGNCC 4 cut(s) 149, 268, 296, 785
CseI GACGC 1 cut(s) 310
Csp6I GTAC 3 cut(s) 122, 217, 874
CviAII CATG 5 cut(s) 146, 253, 523, 569, 791
CviQI GTAC 3 cut(s) 122, 217, 874
DdeI CTNAG 6 cut(s) 287, 305, 482, 750, 764, 836
DpnI GATC 5 cut(s) 208, 567, 573, 625, 855
DpnII GATC 5 cut(s) 206, 565, 571, 623, 853
DraIII CACNNNGTG 2 cut(s) 542, 608
DrdI GACNNNNNNGTC 1 cut(s) 188
DseDI GACNNNNNNGTC 1 cut(s) 188
Eco130I CCWWGG 2 cut(s) 349, 522
Eco47I GGWCC 2 cut(s) 268, 785
Eco57I CTGAAG 2 cut(s) 174, 186
EcoNI CCTNNNNNAGG 1 cut(s) 774
EcoT14I CCWWGG 2 cut(s) 349, 522
ErhI CCWWGG 2 cut(s) 349, 522
FaeI CATG 5 cut(s) 149, 256, 526, 572, 794
FaiI YATR 9 cut(s) 76, 78, 147, 254, 460, 524, 570, 714, 792
FatI CATG 5 cut(s) 145, 252, 522, 568, 790
FauI CCCGC 1 cut(s) 607
FbaI TGATCA 2 cut(s) 565, 571
Fnu4HI GCNGC 2 cut(s) 15, 18
FokI GGATG 5 cut(s) 44, 179, 412, 710, 737
Fsp4HI GCNGC 2 cut(s) 15, 18
FspBI CTAG 2 cut(s) 249, 588
GluI GCNGC 2 cut(s) 15, 18
GsaI CCCAGC 1 cut(s) 206
GsuI CTGGAG 2 cut(s) 64, 149
HaeIII GGCC 2 cut(s) 150, 298
HgaI GACGC 1 cut(s) 310
Hin1II CATG 5 cut(s) 149, 256, 526, 572, 794
HincII GTYRAC 2 cut(s) 55, 760
HindII GTYRAC 2 cut(s) 55, 760
HindIII AAGCTT 1 cut(s) 848
HinfI GANTC 2 cut(s) 234, 674
HpaI GTTAAC 1 cut(s) 760
HphI GGTGA 2 cut(s) 191, 372
Hpy166II GTNNAC 3 cut(s) 55, 545, 760
Hpy188I TCNGA 5 cut(s) 268, 409, 517, 679, 820
Hpy188III TCNNGA 2 cut(s) 128, 569
Hpy8I GTNNAC 3 cut(s) 55, 545, 760
Hpy99I CGWCG 1 cut(s) 304
HpyAV CCTTC 6 cut(s) 71, 293, 387, 402, 614, 712
HpyCH4III ACNGT 1 cut(s) 185
HpyCH4IV ACGT 1 cut(s) 316
HpyCH4V TGCA 1 cut(s) 256
HpyF3I CTNAG 6 cut(s) 287, 305, 482, 750, 764, 836
HpySE526I ACGT 1 cut(s) 316
Hsp92II CATG 5 cut(s) 149, 256, 526, 572, 794
Ksp22I TGATCA 2 cut(s) 565, 571
KspAI GTTAAC 1 cut(s) 760
Kzo9I GATC 5 cut(s) 206, 565, 571, 623, 853
LmnI GCTCC 1 cut(s) 832
LpnPI CCDG 6 cut(s) 28, 113, 165, 188, 524, 740
Lsp1109I GCAGC 1 cut(s) 4
MaeI CTAG 2 cut(s) 249, 588
MaeII ACGT 1 cut(s) 316
MaeIII GTNAC 1 cut(s) 179
MalI GATC 5 cut(s) 208, 567, 573, 625, 855
MboI GATC 5 cut(s) 206, 565, 571, 623, 853
MboII GAAGA 9 cut(s) 167, 179, 363, 665, 692, 695, 698, 853, 855
MfeI CAATTG 2 cut(s) 238, 648
MluCI AATT 9 cut(s) 170, 238, 332, 467, 488, 592, 637, 648, 741
MroXI GAANNNNTTC 1 cut(s) 171
MseI TTAA 5 cut(s) 140, 213, 335, 734, 759
MunI CAATTG 2 cut(s) 238, 648
NcoI CCATGG 1 cut(s) 522
NdeII GATC 5 cut(s) 206, 565, 571, 623, 853
NlaIII CATG 5 cut(s) 149, 256, 526, 572, 794
NlaIV GGNNCC 1 cut(s) 297
NmuCI GTSAC 1 cut(s) 179
NspI RCATGY 1 cut(s) 256
PaeI GCATGC 1 cut(s) 256
PagI TCATGA 1 cut(s) 568
PdmI GAANNNNTTC 1 cut(s) 171
PfeI GAWTC 2 cut(s) 234, 674
PflMI CCANNNNNTGG 1 cut(s) 202
PkrI GCNGC 2 cut(s) 16, 19
PspFI CCCAGC 1 cut(s) 202
PspN4I GGNNCC 1 cut(s) 297
PspPI GGNCC 4 cut(s) 149, 268, 296, 785
RsaI GTAC 3 cut(s) 123, 218, 875
RsaNI GTAC 3 cut(s) 122, 217, 874
SaqAI TTAA 5 cut(s) 140, 213, 335, 734, 759
SatI GCNGC 2 cut(s) 15, 18
Sau3AI GATC 5 cut(s) 206, 565, 571, 623, 853
Sau96I GGNCC 4 cut(s) 149, 268, 296, 785
SinI GGWCC 2 cut(s) 268, 785
SphI GCATGC 1 cut(s) 256
Sse9I AATT 9 cut(s) 170, 238, 332, 467, 488, 592, 637, 648, 741
SsiI CCGC 1 cut(s) 600
SspI AATATT 2 cut(s) 710, 799
SspMI CTAG 2 cut(s) 249, 588
StyI CCWWGG 2 cut(s) 349, 522
TaaI ACNGT 1 cut(s) 185
TaiI ACGT 1 cut(s) 319
TaqI TCGA 1 cut(s) 503
TasI AATT 9 cut(s) 170, 238, 332, 467, 488, 592, 637, 648, 741
TatI WGTACW 1 cut(s) 216
TfiI GAWTC 2 cut(s) 234, 674
Tru1I TTAA 5 cut(s) 140, 213, 335, 734, 759
Tru9I TTAA 5 cut(s) 140, 213, 335, 734, 759
TscAI CASTG 3 cut(s) 190, 372, 562
TseFI GTSAC 1 cut(s) 179
TseI GCWGC 2 cut(s) 14, 17
Tsp45I GTSAC 1 cut(s) 179
TspDTI ATGAA 6 cut(s) 357, 414, 426, 480, 482, 654
TspRI CASTG 3 cut(s) 190, 372, 562
Van91I CCANNNNNTGG 1 cut(s) 202
VpaK11BI GGWCC 2 cut(s) 268, 785
XagI CCTNNNNNAGG 1 cut(s) 774
XapI RAATTY 3 cut(s) 170, 488, 741
XceI RCATGY 1 cut(s) 256
XmnI GAANNNNTTC 1 cut(s) 171
XspI CTAG 2 cut(s) 249, 588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.