Rh4BG045600

ENTH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0013320
Physical Location & Seq
Forward (+)
8313319 .. 8314605
1287 bp
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UTR
Exon/CDS
Intron
Rh4BG045600.1

Sequence Viewer

Length: 387 bp
ATGTTCCTGGACCATTTCAAAAAGCAGGCCTCTCGTTTTTTACAAGAGAGATACAAAACTGCTAGGCTGACCTTCACTGATGTTACTCCTGCCGAACTGTGGGCTGAGGAGGCAACAAATGGTGAACCATGTAGCCCTGATGCTAAGACAATGACTAAAATAGCTGCTGCCTCCTTTGAGATGGAGGACTATTGGAGAATAGTTGACATCCTTCACAGAAAGTTATATAACATTGACTGGAAAGAATGGAGGCAATCCTACAAAGCATTGGTACTTCTGGAGTTTTTATTAACACATGGCCCTGAAGACTTTGCTGAAGAATTTCAAGGTGACAGTGAAGTCATCCAAGAGCTGGGATCATTTAAGTACATTGACGACAACGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
ENTH

Protein Analysis

128

Amino Acids

15.06

Weight (kDa)

4.77

Isoelectric Point (pI)

32.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ENTH PF01417 29 - 128 1.4e-25 ENTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013320)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23350 AT3G23350
fragaria_vesca FvH4_4g03870
malus_domestica MD13G1215900.v1.1
prunus_persica Prupe.1G041000_v2.0.a1 Prupe.1G041000_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393891
rosa_laevigata RLG00000009729
rosa_multiflora Rmu_sc0000928.1_g000029
rosa_roxburghii Rroxscaffold_5G00338970
rosa_rugosa Rorug03G0371200 Rorug03G0371200
rosa_samantha Rh4AG049300 Rh4BG045600 Rh4BG045700 Rh4CG052800 Rh4DG046300
rosa_wichuraiana Rw4G003900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 338
AccB7I CCANNNNNTGG 1 cut(s) 352
AclWI GGATC 1 cut(s) 364
AcsI RAATTY 1 cut(s) 320
AcuI CTGAAG 2 cut(s) 324, 336
AfaI GTAC 2 cut(s) 273, 368
AfiI CCNNNNNNNGG 2 cut(s) 99, 352
AgsI TTSAA 2 cut(s) 19, 326
AjnI CCWGG 1 cut(s) 6
AluBI AGCT 2 cut(s) 164, 352
AluI AGCT 2 cut(s) 164, 352
AlwI GGATC 1 cut(s) 364
AoxI GGCC 2 cut(s) 27, 298
ApeKI GCWGC 2 cut(s) 164, 167
ApoI RAATTY 1 cut(s) 320
Asp700I GAANNNNTTC 1 cut(s) 321
AspS9I GGNCC 2 cut(s) 10, 299
AsuHPI GGTGA 2 cut(s) 134, 341
AvaII GGWCC 1 cut(s) 10
BbsI GAAGAC 1 cut(s) 312
BbvCI CCTCAGC 1 cut(s) 105
BbvI GCAGC 2 cut(s) 151, 154
BccI CCATC 1 cut(s) 175
BcgI CGANNNNNNTGC 2 cut(s) 14, 48
BciT130I CCWGG 1 cut(s) 8
BfaI CTAG 1 cut(s) 63
BisI GCNGC 2 cut(s) 165, 168
BlsI GCNGC 2 cut(s) 166, 169
Bme1390I CCNGG 1 cut(s) 8
Bme18I GGWCC 1 cut(s) 10
BmgT120I GGNCC 2 cut(s) 10, 299
BmrFI CCNGG 1 cut(s) 8
BmsI GCATC 1 cut(s) 130
BpiI GAAGAC 1 cut(s) 312
BpmI CTGGAG 1 cut(s) 299
Bpu10I CCTNAGC 1 cut(s) 105
Bsc4I CCNNNNNNNGG 2 cut(s) 99, 352
Bse1I ACTGG 1 cut(s) 242
BseBI CCWGG 1 cut(s) 8
BseGI GGATG 2 cut(s) 207, 342
BseLI CCNNNNNNNGG 2 cut(s) 99, 352
BseMII CTCAG 1 cut(s) 96
BseNI ACTGG 1 cut(s) 242
BseRI GAGGAG 1 cut(s) 122
BseXI GCAGC 2 cut(s) 151, 154
BseYI CCCAGC 1 cut(s) 352
BshFI GGCC 2 cut(s) 29, 300
BslI CCNNNNNNNGG 2 cut(s) 99, 352
BsnI GGCC 2 cut(s) 29, 300
Bsp143I GATC 1 cut(s) 356
BspANI GGCC 2 cut(s) 29, 300
BspCNI CTCAG 1 cut(s) 97
BspPI GGATC 1 cut(s) 364
BsrI ACTGG 1 cut(s) 242
BssMI GATC 1 cut(s) 356
Bst2UI CCWGG 1 cut(s) 8
Bst4CI ACNGT 2 cut(s) 99, 335
BstC8I GCNNGC 1 cut(s) 27
BstDEI CTNAG 2 cut(s) 105, 144
BstF5I GGATG 2 cut(s) 207, 342
BstKTI GATC 1 cut(s) 359
BstMBI GATC 1 cut(s) 356
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNI CCWGG 1 cut(s) 8
BstSCI CCNGG 1 cut(s) 6
BstV1I GCAGC 2 cut(s) 151, 154
BstV2I GAAGAC 1 cut(s) 312
BsuRI GGCC 2 cut(s) 29, 300
BtsCI GGATG 2 cut(s) 207, 342
BtsIMutI CAGTG 2 cut(s) 75, 340
Cac8I GCNNGC 1 cut(s) 27
Cfr13I GGNCC 2 cut(s) 10, 299
Csp6I GTAC 2 cut(s) 272, 367
CviAII CATG 2 cut(s) 129, 296
CviJI RGCY 7 cut(s) 29, 67, 104, 135, 164, 300, 352
CviKI_1 RGCY 7 cut(s) 29, 67, 104, 135, 164, 300, 352
CviQI GTAC 2 cut(s) 272, 367
DdeI CTNAG 2 cut(s) 105, 144
DpnI GATC 1 cut(s) 358
DpnII GATC 1 cut(s) 356
DrdI GACNNNNNNGTC 1 cut(s) 338
DseDI GACNNNNNNGTC 1 cut(s) 338
Eco147I AGGCCT 1 cut(s) 29
Eco47I GGWCC 1 cut(s) 10
Eco57I CTGAAG 2 cut(s) 324, 336
EcoRII CCWGG 1 cut(s) 6
FaeI CATG 2 cut(s) 132, 299
FaiI YATR 4 cut(s) 130, 226, 228, 297
FatI CATG 2 cut(s) 128, 295
Fnu4HI GCNGC 2 cut(s) 165, 168
FokI GGATG 2 cut(s) 194, 329
Fsp4HI GCNGC 2 cut(s) 165, 168
FspBI CTAG 1 cut(s) 63
GluI GCNGC 2 cut(s) 165, 168
GsaI CCCAGC 1 cut(s) 356
GsuI CTGGAG 1 cut(s) 299
HaeIII GGCC 2 cut(s) 29, 300
Hin1II CATG 2 cut(s) 132, 299
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HphI GGTGA 2 cut(s) 134, 341
Hpy166II GTNNAC 2 cut(s) 125, 205
Hpy188III TCNNGA 1 cut(s) 278
Hpy8I GTNNAC 2 cut(s) 125, 205
HpyAV CCTTC 2 cut(s) 82, 221
HpyCH4III ACNGT 2 cut(s) 99, 335
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 2 cut(s) 105, 144
Hsp92II CATG 2 cut(s) 132, 299
Kzo9I GATC 1 cut(s) 356
LpnPI CCDG 8 cut(s) 11, 20, 102, 150, 223, 263, 315, 338
Lsp1109I GCAGC 2 cut(s) 151, 154
LweI GCATC 1 cut(s) 130
MaeI CTAG 1 cut(s) 63
MaeIII GTNAC 2 cut(s) 82, 329
MalI GATC 1 cut(s) 358
MboI GATC 1 cut(s) 356
MboII GAAGA 2 cut(s) 317, 329
MluCI AATT 1 cut(s) 320
MnlI CCTC 6 cut(s) 40, 100, 103, 178, 181, 243
MroXI GAANNNNTTC 1 cut(s) 321
MseI TTAA 2 cut(s) 290, 363
MspR9I CCNGG 1 cut(s) 8
MvaI CCWGG 1 cut(s) 8
MwoI GCNNNNNNNGC 1 cut(s) 110
NdeII GATC 1 cut(s) 356
NlaIII CATG 2 cut(s) 132, 299
NmuCI GTSAC 1 cut(s) 329
PceI AGGCCT 1 cut(s) 29
PdmI GAANNNNTTC 1 cut(s) 321
PflMI CCANNNNNTGG 1 cut(s) 352
PfoI TCCNGGA 1 cut(s) 6
PkrI GCNGC 2 cut(s) 166, 169
Psp6I CCWGG 1 cut(s) 6
PspFI CCCAGC 1 cut(s) 352
PspGI CCWGG 1 cut(s) 6
PspPI GGNCC 2 cut(s) 10, 299
RsaI GTAC 2 cut(s) 273, 368
RsaNI GTAC 2 cut(s) 272, 367
SaqAI TTAA 2 cut(s) 290, 363
SatI GCNGC 2 cut(s) 165, 168
Sau3AI GATC 1 cut(s) 356
Sau96I GGNCC 2 cut(s) 10, 299
ScrFI CCNGG 1 cut(s) 8
SetI ASST 4 cut(s) 74, 166, 331, 354
SfaNI GCATC 1 cut(s) 130
SinI GGWCC 1 cut(s) 10
Sse9I AATT 1 cut(s) 320
SseBI AGGCCT 1 cut(s) 29
SspMI CTAG 1 cut(s) 63
StuI AGGCCT 1 cut(s) 29
StyD4I CCNGG 1 cut(s) 6
TaaI ACNGT 2 cut(s) 99, 335
TasI AATT 1 cut(s) 320
TatI WGTACW 1 cut(s) 366
Tru1I TTAA 2 cut(s) 290, 363
Tru9I TTAA 2 cut(s) 290, 363
TscAI CASTG 2 cut(s) 82, 340
TseFI GTSAC 1 cut(s) 329
TseI GCWGC 2 cut(s) 164, 167
Tsp45I GTSAC 1 cut(s) 329
TspRI CASTG 2 cut(s) 82, 340
Van91I CCANNNNNTGG 1 cut(s) 352
VpaK11BI GGWCC 1 cut(s) 10
XapI RAATTY 1 cut(s) 320
XmnI GAANNNNTTC 1 cut(s) 321
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.