AT3G23440

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0010791
Physical Location & Seq
Reverse (-)
8404062 .. 8405289
1228 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G23440.1

Sequence Viewer

Length: 327 bp
ATGAATCAAAACCATCACGCGCATGAGGGCGCGTCGAGAAAACGTAAAGACACGGAGAGTGATCTAAGAGAAGCCGCCACACCGAACTGGTTATTGGCTGGCTACATGGCACACGAGTACCTCACGTGCGGTACTATGTTGGGCCGGAAGCTGTATTCAGGATGGGCCGAAGTTGGGCCGCTAGTCTCGCCATCACCATTACAGAGCAGAGAAGTGAAAAAGGCTCGCCAGAGTTACTCTGAAGTGGCGAGTGTGTTCAAAACAGATGGAAACCATGTCCCTGGTGTGGTTAACCCGACCCAGCTTGCTAAATGGATCCAGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.05

Weight (kDa)

9.17

Isoelectric Point (pI)

42.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010791)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23440
fragaria_vesca FvH4_4g04100
malus_domestica MD13G1217500.v1.1 MD16G1222600.v1.1
prunus_persica Prupe.1G044300_v2.0.a1 Prupe.1G044300_v2.0.a1
pyrus_communis pycom13g19090 pycom16g18650
rosa_chinensis RchiOBHm_Chr4g0394481
rosa_laevigata RLG00000009695
rosa_multiflora Rmu_sc0000200.1_g000024 Rmu_sc0013311.1_g000001
rosa_roxburghii Rroxscaffold_5G00339510
rosa_rugosa Rorug03G0365800.1
rosa_samantha Rh4AG052300 Rh4BG050200 Rh4CG056600 Rh4DG049300
rosa_wichuraiana Rw0G003380 Rw4G004220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 20, 32
AciI CCGC 3 cut(s) 75, 129, 179
AclWI GGATC 2 cut(s) 310, 323
AcuI CTGAAG 1 cut(s) 261
AcvI CACGTG 1 cut(s) 126
AfaI GTAC 2 cut(s) 119, 133
AfiI CCNNNNNNNGG 2 cut(s) 174, 286
AgsI TTSAA 1 cut(s) 259
AjnI CCWGG 1 cut(s) 280
AjuI GAANNNNNNNTTGG 2 cut(s) 77, 109
AluBI AGCT 2 cut(s) 151, 304
AluI AGCT 2 cut(s) 151, 304
Alw26I GTCTC 1 cut(s) 190
AlwI GGATC 2 cut(s) 310, 323
AoxI GGCC 3 cut(s) 142, 165, 176
AspLEI GCGC 2 cut(s) 22, 32
AspS9I GGNCC 3 cut(s) 142, 165, 176
AsuHPI GGTGA 1 cut(s) 186
BaeI ACNNNNGTAYC 2 cut(s) 101, 134
BamHI GGATCC 1 cut(s) 315
BauI CACGAG 1 cut(s) 113
BbrPI CACGTG 1 cut(s) 126
BccI CCATC 4 cut(s) 21, 156, 199, 260
BciT130I CCWGG 1 cut(s) 282
BcoDI GTCTC 1 cut(s) 190
BfaI CTAG 1 cut(s) 182
BisI GCNGC 2 cut(s) 75, 179
BlsI GCNGC 2 cut(s) 76, 180
Bme1390I CCNGG 1 cut(s) 282
BmgT120I GGNCC 3 cut(s) 142, 165, 176
BmiI GGNNCC 1 cut(s) 317
BmrFI CCNGG 1 cut(s) 282
BsaAI YACGTR 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 280
Bsc4I CCNNNNNNNGG 2 cut(s) 174, 286
Bse1I ACTGG 1 cut(s) 92
BseBI CCWGG 1 cut(s) 282
BseDI CCNNGG 1 cut(s) 280
BseGI GGATG 1 cut(s) 167
BseLI CCNNNNNNNGG 2 cut(s) 174, 286
BseNI ACTGG 1 cut(s) 92
BseYI CCCAGC 1 cut(s) 300
Bsh1236I CGCG 2 cut(s) 20, 32
BshFI GGCC 3 cut(s) 144, 167, 178
BsiSI CCGG 1 cut(s) 145
BslFI GGGAC 1 cut(s) 263
BslI CCNNNNNNNGG 2 cut(s) 174, 286
BsmAI GTCTC 1 cut(s) 190
BsmFI GGGAC 1 cut(s) 263
BsnI GGCC 3 cut(s) 144, 167, 178
Bsp143I GATC 2 cut(s) 61, 315
BspACI CCGC 3 cut(s) 75, 129, 179
BspANI GGCC 3 cut(s) 144, 167, 178
BspFNI CGCG 2 cut(s) 20, 32
BspLI GGNNCC 1 cut(s) 317
BspPI GGATC 2 cut(s) 310, 323
BsrI ACTGG 1 cut(s) 92
BssECI CCNNGG 1 cut(s) 280
BssMI GATC 2 cut(s) 61, 315
BssSI CACGAG 1 cut(s) 113
Bst2BI CACGAG 1 cut(s) 113
Bst2UI CCWGG 1 cut(s) 282
BstBAI YACGTR 1 cut(s) 126
BstC8I GCNNGC 3 cut(s) 100, 226, 306
BstDEI CTNAG 1 cut(s) 65
BstF5I GGATG 1 cut(s) 167
BstFNI CGCG 2 cut(s) 20, 32
BstHHI GCGC 2 cut(s) 22, 32
BstKTI GATC 2 cut(s) 64, 318
BstMAI GTCTC 1 cut(s) 190
BstMBI GATC 2 cut(s) 61, 315
BstMWI GCNNNNNNNGC 1 cut(s) 187
BstNI CCWGG 1 cut(s) 282
BstSCI CCNGG 1 cut(s) 280
BstUI CGCG 2 cut(s) 20, 32
BstX2I RGATCY 1 cut(s) 315
BstXI CCANNNNNNTGG 1 cut(s) 281
BstYI RGATCY 1 cut(s) 315
BsuRI GGCC 3 cut(s) 144, 167, 178
BtsCI GGATG 1 cut(s) 167
Cac8I GCNNGC 3 cut(s) 100, 226, 306
CfoI GCGC 2 cut(s) 22, 32
Cfr13I GGNCC 3 cut(s) 142, 165, 176
CseI GACGC 1 cut(s) 21
Csp6I GTAC 2 cut(s) 118, 132
CviAII CATG 3 cut(s) 23, 106, 275
CviJI RGCY 9 cut(s) 74, 98, 102, 144, 151, 167, 178, 224, 304
CviKI_1 RGCY 9 cut(s) 74, 98, 102, 144, 151, 167, 178, 224, 304
CviQI GTAC 2 cut(s) 118, 132
DdeI CTNAG 1 cut(s) 65
DpnI GATC 2 cut(s) 63, 317
DpnII GATC 2 cut(s) 61, 315
Eco57I CTGAAG 1 cut(s) 261
Eco72I CACGTG 1 cut(s) 126
EcoRII CCWGG 1 cut(s) 280
FaeI CATG 3 cut(s) 26, 109, 278
FaiI YATR 4 cut(s) 24, 107, 137, 276
FaqI GGGAC 1 cut(s) 263
FatI CATG 3 cut(s) 22, 105, 274
Fnu4HI GCNGC 2 cut(s) 75, 179
FokI GGATG 1 cut(s) 174
Fsp4HI GCNGC 2 cut(s) 75, 179
FspBI CTAG 1 cut(s) 182
GlaI GCGC 2 cut(s) 21, 31
GluI GCNGC 2 cut(s) 75, 179
GsaI CCCAGC 1 cut(s) 304
HaeIII GGCC 3 cut(s) 144, 167, 178
HapII CCGG 1 cut(s) 145
HgaI GACGC 1 cut(s) 21
HhaI GCGC 2 cut(s) 22, 32
Hin1II CATG 3 cut(s) 26, 109, 278
Hin6I GCGC 2 cut(s) 20, 30
HinP1I GCGC 2 cut(s) 20, 30
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HinfI GANTC 1 cut(s) 4
HpaI GTTAAC 1 cut(s) 292
HpaII CCGG 1 cut(s) 145
HphI GGTGA 1 cut(s) 186
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 1 cut(s) 241
Hpy188III TCNNGA 3 cut(s) 36, 159, 319
Hpy8I GTNNAC 1 cut(s) 292
Hpy99I CGWCG 1 cut(s) 37
HpyCH4IV ACGT 2 cut(s) 43, 125
HpyF10VI GCNNNNNNNGC 1 cut(s) 187
HpyF3I CTNAG 1 cut(s) 65
HpySE526I ACGT 2 cut(s) 43, 125
Hsp92II CATG 3 cut(s) 26, 109, 278
HspAI GCGC 2 cut(s) 20, 30
KspAI GTTAAC 1 cut(s) 292
Kzo9I GATC 2 cut(s) 61, 315
LpnPI CCDG 8 cut(s) 73, 84, 144, 158, 242, 267, 294, 314
MaeI CTAG 1 cut(s) 182
MaeII ACGT 2 cut(s) 43, 125
MaeIII GTNAC 1 cut(s) 233
MalI GATC 2 cut(s) 63, 317
MboI GATC 2 cut(s) 61, 315
MflI RGATCY 1 cut(s) 315
MnlI CCTC 2 cut(s) 19, 131
MseI TTAA 1 cut(s) 291
MslI CAYNNNNRTG 1 cut(s) 21
MspI CCGG 1 cut(s) 145
MspR9I CCNGG 1 cut(s) 282
MvaI CCWGG 1 cut(s) 282
MvnI CGCG 2 cut(s) 20, 32
MwoI GCNNNNNNNGC 1 cut(s) 187
NdeII GATC 2 cut(s) 61, 315
NlaIII CATG 3 cut(s) 26, 109, 278
NlaIV GGNNCC 1 cut(s) 317
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 2 cut(s) 76, 180
PmaCI CACGTG 1 cut(s) 126
PmlI CACGTG 1 cut(s) 126
Ppu21I YACGTR 1 cut(s) 126
Psp6I CCWGG 1 cut(s) 280
PspCI CACGTG 1 cut(s) 126
PspFI CCCAGC 1 cut(s) 300
PspGI CCWGG 1 cut(s) 280
PspN4I GGNNCC 1 cut(s) 317
PspPI GGNCC 3 cut(s) 142, 165, 176
PsuI RGATCY 1 cut(s) 315
RsaI GTAC 2 cut(s) 119, 133
RsaNI GTAC 2 cut(s) 118, 132
RseI CAYNNNNRTG 1 cut(s) 21
SaqAI TTAA 1 cut(s) 291
SatI GCNGC 2 cut(s) 75, 179
Sau3AI GATC 2 cut(s) 61, 315
Sau96I GGNCC 3 cut(s) 142, 165, 176
ScrFI CCNGG 1 cut(s) 282
SetI ASST 5 cut(s) 46, 123, 128, 153, 306
SmiMI CAYNNNNRTG 1 cut(s) 21
SsiI CCGC 3 cut(s) 75, 129, 179
SspMI CTAG 1 cut(s) 182
StyD4I CCNGG 1 cut(s) 280
TaiI ACGT 2 cut(s) 46, 128
TaqI TCGA 1 cut(s) 35
TauI GCSGC 2 cut(s) 77, 181
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 68
XspI CTAG 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.