pycom13g19090

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0010791
Physical Location & Seq
Reverse (-)
15135513 .. 15135962
450 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g19090.1

Sequence Viewer

Length: 450 bp
ATGAATTTCCCACAAAACCACAGCCGTAGGATTTTGCCACCTGTCGCTTCAAGAAAGCGAAAGGAGACCCCATCGAACGGCTTTAAACTACCGGCTCCGAAGGCTCCAAGGGCTCCAAGCTCAACGACAGCTCCAAAAGCTCCGAGCAAAAAGACAGCTTCGCCGCTCTCGGCAAACTGGCTTCTGGCGGGCCACATGGCGTACGAGTATTTAACCAAGGGCACACTGTTCGGTCAGAAGTTCGACCCGGCTCTAGCCGAGGCGGTTCCCCTGGTGGCTAGCTTCTCAGCCGAGCCGAGGAAGGGGAAGCCGGTCGAATCAGGAAAAGGATCCGGTACGGGCGCAGCGCATGAGAGTTACGCTGAGGTGGCGAGCTTACTGAAGACGGATGGGGCCCACATTCCGGGGATTGTGAACCCGACGCAACTGGCGAAGTGGATTCAGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

15.81

Weight (kDa)

10.15

Isoelectric Point (pI)

42.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010791)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23440
fragaria_vesca FvH4_4g04100
malus_domestica MD13G1217500.v1.1 MD16G1222600.v1.1
prunus_persica Prupe.1G044300_v2.0.a1 Prupe.1G044300_v2.0.a1
pyrus_communis pycom13g19090 pycom16g18650
rosa_chinensis RchiOBHm_Chr4g0394481
rosa_laevigata RLG00000009695
rosa_multiflora Rmu_sc0000200.1_g000024 Rmu_sc0013311.1_g000001
rosa_roxburghii Rroxscaffold_5G00339510
rosa_rugosa Rorug03G0365800.1
rosa_samantha Rh4AG052300 Rh4BG050200 Rh4CG056600 Rh4DG049300
rosa_wichuraiana Rw0G003380 Rw4G004220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 166
AciI CCGC 3 cut(s) 164, 188, 263
AclWI GGATC 2 cut(s) 324, 337
AcsI RAATTY 1 cut(s) 4
AcuI CTGAAG 1 cut(s) 401
AfaI GTAC 2 cut(s) 203, 337
AfiI CCNNNNNNNGG 4 cut(s) 77, 297, 302, 403
AgsI TTSAA 1 cut(s) 51
AjnI CCWGG 1 cut(s) 270
AluBI AGCT 6 cut(s) 120, 131, 140, 158, 282, 375
AluI AGCT 6 cut(s) 120, 131, 140, 158, 282, 375
Alw26I GTCTC 1 cut(s) 59
AlwI GGATC 2 cut(s) 324, 337
AoxI GGCC 2 cut(s) 190, 393
ApaI GGGCCC 1 cut(s) 397
ApeKI GCWGC 1 cut(s) 344
ApoI RAATTY 1 cut(s) 4
AspLEI GCGC 2 cut(s) 344, 349
AspS9I GGNCC 3 cut(s) 190, 393, 394
AsuC2I CCSGG 2 cut(s) 248, 405
AsuNHI GCTAGC 1 cut(s) 278
BaeGI GKGCMC 2 cut(s) 224, 397
BamHI GGATCC 1 cut(s) 329
BanII GRGCYC 2 cut(s) 115, 397
BbsI GAAGAC 1 cut(s) 389
BbvCI CCTCAGC 1 cut(s) 363
BbvI GCAGC 1 cut(s) 356
BccI CCATC 2 cut(s) 79, 383
BceAI ACGGC 2 cut(s) 9, 94
BcgI CGANNNNNNTGC 2 cut(s) 211, 245
BciT130I CCWGG 1 cut(s) 272
BcnI CCSGG 2 cut(s) 248, 405
BcoDI GTCTC 1 cut(s) 59
BfaI CTAG 2 cut(s) 254, 279
BisI GCNGC 2 cut(s) 164, 345
BlsI GCNGC 2 cut(s) 165, 346
Bme1390I CCNGG 3 cut(s) 248, 272, 405
BmgT120I GGNCC 3 cut(s) 190, 393, 394
BmiI GGNNCC 7 cut(s) 96, 105, 114, 267, 331, 394, 395
BmrFI CCNGG 3 cut(s) 248, 272, 405
BmtI GCTAGC 1 cut(s) 282
BpiI GAAGAC 1 cut(s) 389
Bpu10I CCTNAGC 1 cut(s) 363
BpuMI CCSGG 2 cut(s) 248, 405
BsaI GGTCTC 1 cut(s) 59
BsaJI CCNNGG 6 cut(s) 107, 216, 258, 270, 296, 404
BsaWI WCCGGW 1 cut(s) 332
BsaXI ACNNNNNCTCC 2 cut(s) 115, 145
Bsc4I CCNNNNNNNGG 4 cut(s) 77, 297, 302, 403
Bse118I RCCGGY 2 cut(s) 91, 310
Bse1I ACTGG 2 cut(s) 182, 432
BseBI CCWGG 1 cut(s) 272
BseDI CCNNGG 6 cut(s) 107, 216, 258, 270, 296, 404
BseGI GGATG 1 cut(s) 394
BseLI CCNNNNNNNGG 4 cut(s) 77, 297, 302, 403
BseMII CTCAG 2 cut(s) 300, 354
BseNI ACTGG 2 cut(s) 182, 432
BseSI GKGCMC 2 cut(s) 224, 397
BseXI GCAGC 1 cut(s) 356
Bsh1285I CGRYCG 1 cut(s) 315
BshFI GGCC 2 cut(s) 192, 395
BsiEI CGRYCG 1 cut(s) 315
BsiSI CCGG 5 cut(s) 92, 248, 311, 333, 404
BsiWI CGTACG 1 cut(s) 201
BslI CCNNNNNNNGG 4 cut(s) 77, 297, 302, 403
BsmAI GTCTC 1 cut(s) 59
BsnI GGCC 2 cut(s) 192, 395
Bso31I GGTCTC 1 cut(s) 59
Bsp120I GGGCCC 1 cut(s) 393
Bsp1286I GDGCHC 3 cut(s) 115, 224, 397
Bsp143I GATC 1 cut(s) 329
BspACI CCGC 3 cut(s) 164, 188, 263
BspANI GGCC 2 cut(s) 192, 395
BspCNI CTCAG 2 cut(s) 299, 355
BspLI GGNNCC 7 cut(s) 96, 105, 114, 267, 331, 394, 395
BspOI GCTAGC 1 cut(s) 282
BspPI GGATC 2 cut(s) 324, 337
BspTNI GGTCTC 1 cut(s) 59
BsrBI CCGCTC 1 cut(s) 166
BsrFI RCCGGY 2 cut(s) 91, 310
BsrI ACTGG 2 cut(s) 182, 432
BssAI RCCGGY 2 cut(s) 91, 310
BssECI CCNNGG 6 cut(s) 107, 216, 258, 270, 296, 404
BssMI GATC 1 cut(s) 329
BssT1I CCWWGG 2 cut(s) 107, 216
Bst2UI CCWGG 1 cut(s) 272
Bst4CI ACNGT 1 cut(s) 228
BstC8I GCNNGC 3 cut(s) 190, 280, 373
BstDEI CTNAG 2 cut(s) 286, 363
BstF5I GGATG 1 cut(s) 394
BstHHI GCGC 2 cut(s) 344, 349
BstKTI GATC 1 cut(s) 332
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 1 cut(s) 329
BstMCI CGRYCG 1 cut(s) 315
BstMWI GCNNNNNNNGC 4 cut(s) 101, 110, 137, 368
BstNI CCWGG 1 cut(s) 272
BstSCI CCNGG 3 cut(s) 246, 270, 403
BstSLI GKGCMC 2 cut(s) 224, 397
BstV1I GCAGC 1 cut(s) 356
BstV2I GAAGAC 1 cut(s) 389
BstX2I RGATCY 1 cut(s) 329
BstYI RGATCY 1 cut(s) 329
BsuRI GGCC 2 cut(s) 192, 395
BtsCI GGATG 1 cut(s) 394
BtsIMutI CAGTG 1 cut(s) 224
Cac8I GCNNGC 3 cut(s) 190, 280, 373
CfoI GCGC 2 cut(s) 344, 349
Cfr10I RCCGGY 2 cut(s) 91, 310
Cfr13I GGNCC 3 cut(s) 190, 393, 394
CseI GACGC 1 cut(s) 430
Csp6I GTAC 2 cut(s) 202, 336
CviAII CATG 2 cut(s) 196, 350
CviQI GTAC 2 cut(s) 202, 336
DdeI CTNAG 2 cut(s) 286, 363
DpnI GATC 1 cut(s) 331
DpnII GATC 1 cut(s) 329
DraI TTTAAA 1 cut(s) 85
Eco130I CCWWGG 2 cut(s) 107, 216
Eco24I GRGCYC 2 cut(s) 115, 397
Eco31I GGTCTC 1 cut(s) 59
Eco57I CTGAAG 1 cut(s) 401
EcoO109I RGGNCCY 1 cut(s) 393
EcoRII CCWGG 1 cut(s) 270
EcoT14I CCWWGG 2 cut(s) 107, 216
EcoT38I GRGCYC 2 cut(s) 115, 397
ErhI CCWWGG 2 cut(s) 107, 216
FaeI CATG 2 cut(s) 199, 353
FaiI YATR 2 cut(s) 197, 351
FatI CATG 2 cut(s) 195, 349
FauI CCCGC 1 cut(s) 181
Fnu4HI GCNGC 2 cut(s) 164, 345
FokI GGATG 1 cut(s) 401
FriOI GRGCYC 2 cut(s) 115, 397
Fsp4HI GCNGC 2 cut(s) 164, 345
FspBI CTAG 2 cut(s) 254, 279
GlaI GCGC 2 cut(s) 343, 348
GluI GCNGC 2 cut(s) 164, 345
HaeIII GGCC 2 cut(s) 192, 395
HapII CCGG 5 cut(s) 92, 248, 311, 333, 404
HgaI GACGC 1 cut(s) 430
HhaI GCGC 2 cut(s) 344, 349
Hin1II CATG 2 cut(s) 199, 353
Hin6I GCGC 2 cut(s) 342, 347
HinP1I GCGC 2 cut(s) 342, 347
HinfI GANTC 2 cut(s) 317, 439
HpaII CCGG 5 cut(s) 92, 248, 311, 333, 404
Hpy166II GTNNAC 1 cut(s) 415
Hpy188I TCNGA 4 cut(s) 99, 144, 237, 444
Hpy188III TCNNGA 2 cut(s) 51, 321
Hpy8I GTNNAC 1 cut(s) 415
Hpy99I CGWCG 1 cut(s) 424
HpyAV CCTTC 2 cut(s) 94, 295
HpyCH4III ACNGT 1 cut(s) 228
HpyF10VI GCNNNNNNNGC 4 cut(s) 101, 110, 137, 368
HpyF3I CTNAG 2 cut(s) 286, 363
Hsp92II CATG 2 cut(s) 199, 353
HspAI GCGC 2 cut(s) 342, 347
Kzo9I GATC 1 cut(s) 329
LmnI GCTCC 5 cut(s) 100, 109, 118, 136, 145
Lsp1109I GCAGC 1 cut(s) 356
MaeI CTAG 2 cut(s) 254, 279
MaeIII GTNAC 1 cut(s) 356
MalI GATC 1 cut(s) 331
MbiI CCGCTC 1 cut(s) 166
MboI GATC 1 cut(s) 329
MboII GAAGA 1 cut(s) 394
MflI RGATCY 1 cut(s) 329
MhlI GDGCHC 3 cut(s) 115, 224, 397
MluCI AATT 1 cut(s) 4
MnlI CCTC 3 cut(s) 253, 291, 358
MseI TTAA 2 cut(s) 84, 212
MspI CCGG 5 cut(s) 92, 248, 311, 333, 404
MspR9I CCNGG 3 cut(s) 248, 272, 405
MteI GCGCNGCGC 1 cut(s) 345
MvaI CCWGG 1 cut(s) 272
MwoI GCNNNNNNNGC 4 cut(s) 101, 110, 137, 368
NciI CCSGG 2 cut(s) 248, 405
NdeII GATC 1 cut(s) 329
NheI GCTAGC 1 cut(s) 278
NlaIII CATG 2 cut(s) 199, 353
NlaIV GGNNCC 7 cut(s) 96, 105, 114, 267, 331, 394, 395
NmeAIII GCCGAG 4 cut(s) 149, 283, 316, 321
PcsI WCGNNNNNNNCGW 1 cut(s) 428
PfeI GAWTC 2 cut(s) 317, 439
Pfl23II CGTACG 1 cut(s) 201
PkrI GCNGC 2 cut(s) 165, 346
Psp6I CCWGG 1 cut(s) 270
PspGI CCWGG 1 cut(s) 270
PspLI CGTACG 1 cut(s) 201
PspN4I GGNNCC 7 cut(s) 96, 105, 114, 267, 331, 394, 395
PspOMI GGGCCC 1 cut(s) 393
PspPI GGNCC 3 cut(s) 190, 393, 394
PsuI RGATCY 1 cut(s) 329
RsaI GTAC 2 cut(s) 203, 337
RsaNI GTAC 2 cut(s) 202, 336
SaqAI TTAA 2 cut(s) 84, 212
SatI GCNGC 2 cut(s) 164, 345
Sau3AI GATC 1 cut(s) 329
Sau96I GGNCC 3 cut(s) 190, 393, 394
ScrFI CCNGG 3 cut(s) 248, 272, 405
SduI GDGCHC 3 cut(s) 115, 224, 397
SetI ASST 8 cut(s) 43, 122, 133, 142, 160, 284, 369, 377
Sse9I AATT 1 cut(s) 4
SsiI CCGC 3 cut(s) 164, 188, 263
SspMI CTAG 2 cut(s) 254, 279
StyD4I CCNGG 3 cut(s) 246, 270, 403
StyI CCWWGG 2 cut(s) 107, 216
TaaI ACNGT 1 cut(s) 228
TaqI TCGA 3 cut(s) 74, 243, 315
TaqII GACCGA 1 cut(s) 221
TasI AATT 1 cut(s) 4
TauI GCSGC 1 cut(s) 166
TfiI GAWTC 2 cut(s) 317, 439
Tru1I TTAA 2 cut(s) 84, 212
Tru9I TTAA 2 cut(s) 84, 212
TscAI CASTG 1 cut(s) 231
TseI GCWGC 1 cut(s) 344
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 401
TspRI CASTG 1 cut(s) 231
XapI RAATTY 1 cut(s) 4
XspI CTAG 2 cut(s) 254, 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.