Rh4DG049300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0010791
Physical Location & Seq
Reverse (-)
7936717 .. 7938255
1539 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG049300.1

Sequence Viewer

Length: 417 bp
ATGAGTTACCAGGTCCATAACAGCCGTAGGATTCCGCCACGTGGCGGCGCGCCGAGAAAGCGGAAGGAGAGAGACGATGGCTTTAAACAACCGTCGGCTCCAACTGTCAAGCCTCTGAGCCGGTCAACGACGCAGCCGGCTGTGTCGTCGAATCGGCTGCTGGCGGGCTACATGGCGTACGAGTTTATAACCAGAGGCACGCTGTTGGGTCAGGAGTGCACAGCCGAGCCGGCGAGGGCGATGAAGCCGGTCGAAGCCGGAGCCGATGATGAGCCGGTGAAGGAGAGAGAGGTGGGATCGGGTGAGGTTGCGGCGCAGGATAGGTACGCTGAGGTGGCGACCATTCTGAAGACGGATGGGGCCCACATTCCGGAGATTGTGAACCCGACGCAACTGGCTCGGTGGATTCAGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.17

Weight (kDa)

9.16

Isoelectric Point (pI)

58.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010791)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23440
fragaria_vesca FvH4_4g04100
malus_domestica MD13G1217500.v1.1 MD16G1222600.v1.1
prunus_persica Prupe.1G044300_v2.0.a1 Prupe.1G044300_v2.0.a1
pyrus_communis pycom13g19090 pycom16g18650
rosa_chinensis RchiOBHm_Chr4g0394481
rosa_laevigata RLG00000009695
rosa_multiflora Rmu_sc0000200.1_g000024 Rmu_sc0013311.1_g000001
rosa_roxburghii Rroxscaffold_5G00339510
rosa_rugosa Rorug03G0365800.1
rosa_samantha Rh4AG052300 Rh4BG050200 Rh4CG056600 Rh4DG049300
rosa_wichuraiana Rw0G003380 Rw4G004220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 188
AccII CGCG 1 cut(s) 50
AccIII TCCGGA 1 cut(s) 370
AciI CCGC 5 cut(s) 35, 45, 61, 164, 311
AclWI GGATC 1 cut(s) 304
AcuI CTGAAG 1 cut(s) 368
AcvI CACGTG 1 cut(s) 41
AfaI GTAC 2 cut(s) 179, 326
AfiI CCNNNNNNNGG 3 cut(s) 41, 44, 370
AjnI CCWGG 1 cut(s) 9
Alw21I GWGCWC 1 cut(s) 221
Alw26I GTCTC 1 cut(s) 66
Alw44I GTGCAC 1 cut(s) 217
AlwI GGATC 1 cut(s) 304
Aor13HI TCCGGA 1 cut(s) 370
AoxI GGCC 1 cut(s) 360
ApaI GGGCCC 1 cut(s) 364
ApaLI GTGCAC 1 cut(s) 217
ApeKI GCWGC 2 cut(s) 133, 157
AscI GGCGCGCC 1 cut(s) 48
AspLEI GCGC 3 cut(s) 50, 52, 316
AspS9I GGNCC 3 cut(s) 13, 360, 361
AsuHPI GGTGA 2 cut(s) 289, 314
AvaII GGWCC 1 cut(s) 13
BaeGI GKGCMC 2 cut(s) 221, 364
BanII GRGCYC 1 cut(s) 364
BbrPI CACGTG 1 cut(s) 41
BbsI GAAGAC 1 cut(s) 356
Bbv12I GWGCWC 1 cut(s) 221
BbvCI CCTCAGC 1 cut(s) 330
BbvI GCAGC 2 cut(s) 144, 145
BccI CCATC 2 cut(s) 71, 350
BceAI ACGGC 1 cut(s) 9
BcgI CGANNNNNNTGC 4 cut(s) 139, 173, 380, 414
BciT130I CCWGG 1 cut(s) 11
BcoDI GTCTC 1 cut(s) 66
BglI GCCNNNNNGGC 1 cut(s) 230
BisI GCNGC 4 cut(s) 46, 134, 158, 312
BlsI GCNGC 4 cut(s) 47, 135, 159, 313
Bme1390I CCNGG 1 cut(s) 11
Bme18I GGWCC 1 cut(s) 13
BmgT120I GGNCC 3 cut(s) 13, 360, 361
BmiI GGNNCC 4 cut(s) 99, 262, 361, 362
BmrFI CCNGG 1 cut(s) 11
BpiI GAAGAC 1 cut(s) 356
Bpu10I CCTNAGC 1 cut(s) 330
BsaAI YACGTR 1 cut(s) 41
BsaWI WCCGGW 1 cut(s) 370
Bsc4I CCNNNNNNNGG 3 cut(s) 41, 44, 370
Bse118I RCCGGY 5 cut(s) 120, 136, 229, 247, 274
Bse1I ACTGG 1 cut(s) 399
BseAI TCCGGA 1 cut(s) 370
BseBI CCWGG 1 cut(s) 11
BseGI GGATG 1 cut(s) 361
BseLI CCNNNNNNNGG 3 cut(s) 41, 44, 370
BseMII CTCAG 2 cut(s) 107, 321
BseNI ACTGG 1 cut(s) 399
BsePI GCGCGC 1 cut(s) 48
BseSI GKGCMC 2 cut(s) 221, 364
BseXI GCAGC 2 cut(s) 144, 145
Bsh1236I CGCG 1 cut(s) 50
Bsh1285I CGRYCG 1 cut(s) 252
BshFI GGCC 1 cut(s) 362
BsiEI CGRYCG 1 cut(s) 252
BsiHKAI GWGCWC 1 cut(s) 221
BsiSI CCGG 7 cut(s) 121, 137, 230, 248, 258, 275, 371
BsiWI CGTACG 1 cut(s) 177
BslI CCNNNNNNNGG 3 cut(s) 41, 44, 370
BsmAI GTCTC 1 cut(s) 66
BsmBI CGTCTC 1 cut(s) 66
BsnI GGCC 1 cut(s) 362
Bsp120I GGGCCC 1 cut(s) 360
Bsp1286I GDGCHC 2 cut(s) 221, 364
Bsp13I TCCGGA 1 cut(s) 370
Bsp143I GATC 1 cut(s) 296
BspACI CCGC 5 cut(s) 35, 45, 61, 164, 311
BspANI GGCC 1 cut(s) 362
BspCNI CTCAG 2 cut(s) 108, 322
BspEI TCCGGA 1 cut(s) 370
BspFNI CGCG 1 cut(s) 50
BspLI GGNNCC 4 cut(s) 99, 262, 361, 362
BspPI GGATC 1 cut(s) 304
BsrFI RCCGGY 5 cut(s) 120, 136, 229, 247, 274
BsrI ACTGG 1 cut(s) 399
BssAI RCCGGY 5 cut(s) 120, 136, 229, 247, 274
BssHII GCGCGC 1 cut(s) 48
BssMI GATC 1 cut(s) 296
Bst2UI CCWGG 1 cut(s) 11
Bst4CI ACNGT 2 cut(s) 93, 106
BstBAI YACGTR 1 cut(s) 41
BstC8I GCNNGC 6 cut(s) 50, 138, 162, 166, 200, 231
BstDEI CTNAG 2 cut(s) 116, 330
BstF5I GGATG 1 cut(s) 361
BstFNI CGCG 1 cut(s) 50
BstHHI GCGC 3 cut(s) 50, 52, 316
BstKTI GATC 1 cut(s) 299
BstMAI GTCTC 1 cut(s) 66
BstMBI GATC 1 cut(s) 296
BstMCI CGRYCG 1 cut(s) 252
BstMWI GCNNNNNNNGC 3 cut(s) 58, 230, 335
BstNI CCWGG 1 cut(s) 11
BstSCI CCNGG 1 cut(s) 9
BstSLI GKGCMC 2 cut(s) 221, 364
BstUI CGCG 1 cut(s) 50
BstV1I GCAGC 2 cut(s) 144, 145
BstV2I GAAGAC 1 cut(s) 356
BsuRI GGCC 1 cut(s) 362
BtgZI GCGATG 1 cut(s) 254
BtsCI GGATG 1 cut(s) 361
Cac8I GCNNGC 6 cut(s) 50, 138, 162, 166, 200, 231
CfoI GCGC 3 cut(s) 50, 52, 316
Cfr10I RCCGGY 5 cut(s) 120, 136, 229, 247, 274
Cfr13I GGNCC 3 cut(s) 13, 360, 361
CseI GACGC 2 cut(s) 139, 397
CsiI ACCWGGT 1 cut(s) 9
Csp6I GTAC 2 cut(s) 178, 325
CviAII CATG 1 cut(s) 172
CviQI GTAC 2 cut(s) 178, 325
DdeI CTNAG 2 cut(s) 116, 330
DpnI GATC 1 cut(s) 298
DpnII GATC 1 cut(s) 296
DraI TTTAAA 1 cut(s) 85
EciI GGCGGA 1 cut(s) 24
Eco24I GRGCYC 1 cut(s) 364
Eco47I GGWCC 1 cut(s) 13
Eco57I CTGAAG 1 cut(s) 368
Eco72I CACGTG 1 cut(s) 41
EcoO109I RGGNCCY 1 cut(s) 360
EcoRII CCWGG 1 cut(s) 9
EcoT38I GRGCYC 1 cut(s) 364
Esp3I CGTCTC 1 cut(s) 66
FaeI CATG 1 cut(s) 175
FaiI YATR 3 cut(s) 18, 173, 188
FatI CATG 1 cut(s) 171
FauI CCCGC 1 cut(s) 157
Fnu4HI GCNGC 4 cut(s) 46, 134, 158, 312
FokI GGATG 1 cut(s) 368
FriOI GRGCYC 1 cut(s) 364
Fsp4HI GCNGC 4 cut(s) 46, 134, 158, 312
GlaI GCGC 3 cut(s) 49, 51, 315
GluI GCNGC 4 cut(s) 46, 134, 158, 312
HaeIII GGCC 1 cut(s) 362
HapII CCGG 7 cut(s) 121, 137, 230, 248, 258, 275, 371
HgaI GACGC 2 cut(s) 139, 397
HhaI GCGC 3 cut(s) 50, 52, 316
Hin1II CATG 1 cut(s) 175
Hin6I GCGC 3 cut(s) 48, 50, 314
HinP1I GCGC 3 cut(s) 48, 50, 314
HincII GTYRAC 1 cut(s) 126
HindII GTYRAC 1 cut(s) 126
HinfI GANTC 3 cut(s) 31, 151, 406
HpaII CCGG 7 cut(s) 121, 137, 230, 248, 258, 275, 371
HphI GGTGA 2 cut(s) 289, 314
Hpy166II GTNNAC 3 cut(s) 126, 219, 382
Hpy188I TCNGA 3 cut(s) 117, 348, 411
Hpy188III TCNNGA 2 cut(s) 212, 371
Hpy8I GTNNAC 3 cut(s) 126, 219, 382
Hpy99I CGWCG 4 cut(s) 97, 133, 151, 391
HpyAV CCTTC 2 cut(s) 58, 274
HpyCH4III ACNGT 2 cut(s) 93, 106
HpyCH4IV ACGT 1 cut(s) 40
HpyCH4V TGCA 1 cut(s) 219
HpyF10VI GCNNNNNNNGC 3 cut(s) 58, 230, 335
HpyF3I CTNAG 2 cut(s) 116, 330
HpySE526I ACGT 1 cut(s) 40
Hsp92II CATG 1 cut(s) 175
HspAI GCGC 3 cut(s) 48, 50, 314
Kpn2I TCCGGA 1 cut(s) 370
KroI GCCGGC 2 cut(s) 136, 229
KroNI GCCGGC 2 cut(s) 138, 231
Kzo9I GATC 1 cut(s) 296
LmnI GCTCC 2 cut(s) 103, 260
Lsp1109I GCAGC 2 cut(s) 144, 145
MabI ACCWGGT 1 cut(s) 9
MaeII ACGT 1 cut(s) 40
MaeIII GTNAC 1 cut(s) 5
MalI GATC 1 cut(s) 298
MboI GATC 1 cut(s) 296
MboII GAAGA 1 cut(s) 361
MhlI GDGCHC 2 cut(s) 221, 364
MmeI TCCRAC 1 cut(s) 125
MnlI CCTC 6 cut(s) 123, 188, 228, 283, 298, 325
MroI TCCGGA 1 cut(s) 370
MroNI GCCGGC 2 cut(s) 136, 229
MseI TTAA 1 cut(s) 84
MspI CCGG 7 cut(s) 121, 137, 230, 248, 258, 275, 371
MspR9I CCNGG 1 cut(s) 11
MvaI CCWGG 1 cut(s) 11
MvnI CGCG 1 cut(s) 50
MwoI GCNNNNNNNGC 3 cut(s) 58, 230, 335
NaeI GCCGGC 2 cut(s) 138, 231
NdeII GATC 1 cut(s) 296
NgoMIV GCCGGC 2 cut(s) 136, 229
NlaIII CATG 1 cut(s) 175
NlaIV GGNNCC 4 cut(s) 99, 262, 361, 362
NmeAIII GCCGAG 2 cut(s) 78, 250
PalAI GGCGCGCC 1 cut(s) 48
PauI GCGCGC 1 cut(s) 48
PdiI GCCGGC 2 cut(s) 138, 231
PfeI GAWTC 3 cut(s) 31, 151, 406
Pfl23II CGTACG 1 cut(s) 177
PkrI GCNGC 4 cut(s) 47, 135, 159, 313
PmaCI CACGTG 1 cut(s) 41
PmlI CACGTG 1 cut(s) 41
Ppu21I YACGTR 1 cut(s) 41
PsiI TTATAA 1 cut(s) 188
Psp6I CCWGG 1 cut(s) 9
PspCI CACGTG 1 cut(s) 41
PspGI CCWGG 1 cut(s) 9
PspLI CGTACG 1 cut(s) 177
PspN4I GGNNCC 4 cut(s) 99, 262, 361, 362
PspOMI GGGCCC 1 cut(s) 360
PspPI GGNCC 3 cut(s) 13, 360, 361
PteI GCGCGC 1 cut(s) 48
RsaI GTAC 2 cut(s) 179, 326
RsaNI GTAC 2 cut(s) 178, 325
SaqAI TTAA 1 cut(s) 84
SatI GCNGC 4 cut(s) 46, 134, 158, 312
Sau3AI GATC 1 cut(s) 296
Sau96I GGNCC 3 cut(s) 13, 360, 361
ScrFI CCNGG 1 cut(s) 11
SduI GDGCHC 2 cut(s) 221, 364
SetI ASST 6 cut(s) 15, 43, 294, 309, 326, 336
SexAI ACCWGGT 1 cut(s) 9
SgsI GGCGCGCC 1 cut(s) 48
SinI GGWCC 1 cut(s) 13
SsiI CCGC 5 cut(s) 35, 45, 61, 164, 311
StyD4I CCNGG 1 cut(s) 9
TaaI ACNGT 2 cut(s) 93, 106
TaiI ACGT 1 cut(s) 43
TaqI TCGA 2 cut(s) 149, 252
TauI GCSGC 2 cut(s) 48, 314
TfiI GAWTC 3 cut(s) 31, 151, 406
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TseI GCWGC 2 cut(s) 133, 157
TspDTI ATGAA 1 cut(s) 257
TspGWI ACGGA 1 cut(s) 368
VneI GTGCAC 1 cut(s) 217
VpaK11BI GGWCC 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.