Rh4BG050200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0010791
Physical Location & Seq
Reverse (-)
8992826 .. 8993233
408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG050200.1

Sequence Viewer

Length: 408 bp
ATGAGTTACCAGGTTCATAACAGCCGTAGGATTCCGCCACGTGGCGGCGCGCCGAGAAAGCGGAAGGAAAGAGACGATGGCTTTAAACAACCGTCGGCTCCAACTGTTAAGCCTCCGAGCCGGTCAACGACGCAGCCGGCTGTGTCGTCGAATCGGCTGCTGGCGGGCTACATGGCGTACGAGTTCATAACCAGAGGCACGCTGTTGGGTCAGGAGTGCACAGCCGAGCCGGCGAGGGCGATGAAGCCGGTCGAAGCCGGAGCCGATGATGAGCCGGTGAAGGTGGGATCGGGTGAGGTTGCGGCGCAGGATAGGTACGCTGAGGTGGCGACCATTCTGAAGACGGATGGGGCCCACATTCCGGAGATTGTGAACCCGACGCAACTGGCTCGGTGGATTCAGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

14.74

Weight (kDa)

9.41

Isoelectric Point (pI)

61.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010791)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23440
fragaria_vesca FvH4_4g04100
malus_domestica MD13G1217500.v1.1 MD16G1222600.v1.1
prunus_persica Prupe.1G044300_v2.0.a1 Prupe.1G044300_v2.0.a1
pyrus_communis pycom13g19090 pycom16g18650
rosa_chinensis RchiOBHm_Chr4g0394481
rosa_laevigata RLG00000009695
rosa_multiflora Rmu_sc0000200.1_g000024 Rmu_sc0013311.1_g000001
rosa_roxburghii Rroxscaffold_5G00339510
rosa_rugosa Rorug03G0365800.1
rosa_samantha Rh4AG052300 Rh4BG050200 Rh4CG056600 Rh4DG049300
rosa_wichuraiana Rw0G003380 Rw4G004220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 50
AccIII TCCGGA 1 cut(s) 361
AciI CCGC 5 cut(s) 35, 45, 61, 164, 302
AclWI GGATC 1 cut(s) 295
AcuI CTGAAG 1 cut(s) 359
AcvI CACGTG 1 cut(s) 41
AfaI GTAC 2 cut(s) 179, 317
AfiI CCNNNNNNNGG 3 cut(s) 41, 44, 361
AjnI CCWGG 1 cut(s) 9
Alw21I GWGCWC 1 cut(s) 221
Alw26I GTCTC 1 cut(s) 66
Alw44I GTGCAC 1 cut(s) 217
AlwI GGATC 1 cut(s) 295
Aor13HI TCCGGA 1 cut(s) 361
AoxI GGCC 1 cut(s) 351
ApaI GGGCCC 1 cut(s) 355
ApaLI GTGCAC 1 cut(s) 217
ApeKI GCWGC 2 cut(s) 133, 157
AscI GGCGCGCC 1 cut(s) 48
AspLEI GCGC 3 cut(s) 50, 52, 307
AspS9I GGNCC 2 cut(s) 351, 352
AsuHPI GGTGA 2 cut(s) 289, 305
BaeGI GKGCMC 2 cut(s) 221, 355
BanII GRGCYC 1 cut(s) 355
BbrPI CACGTG 1 cut(s) 41
BbsI GAAGAC 1 cut(s) 347
Bbv12I GWGCWC 1 cut(s) 221
BbvCI CCTCAGC 1 cut(s) 321
BbvI GCAGC 2 cut(s) 144, 145
BccI CCATC 2 cut(s) 71, 341
BceAI ACGGC 1 cut(s) 9
BcgI CGANNNNNNTGC 4 cut(s) 139, 173, 371, 405
BciT130I CCWGG 1 cut(s) 11
BcoDI GTCTC 1 cut(s) 66
BglI GCCNNNNNGGC 1 cut(s) 230
BisI GCNGC 4 cut(s) 46, 134, 158, 303
BlsI GCNGC 4 cut(s) 47, 135, 159, 304
Bme1390I CCNGG 1 cut(s) 11
BmgT120I GGNCC 2 cut(s) 351, 352
BmiI GGNNCC 4 cut(s) 99, 262, 352, 353
BmrFI CCNGG 1 cut(s) 11
BpiI GAAGAC 1 cut(s) 347
Bpu10I CCTNAGC 1 cut(s) 321
BsaAI YACGTR 1 cut(s) 41
BsaWI WCCGGW 1 cut(s) 361
Bsc4I CCNNNNNNNGG 3 cut(s) 41, 44, 361
Bse118I RCCGGY 5 cut(s) 120, 136, 229, 247, 274
Bse1I ACTGG 1 cut(s) 390
BseAI TCCGGA 1 cut(s) 361
BseBI CCWGG 1 cut(s) 11
BseGI GGATG 1 cut(s) 352
BseLI CCNNNNNNNGG 3 cut(s) 41, 44, 361
BseMII CTCAG 1 cut(s) 312
BseNI ACTGG 1 cut(s) 390
BsePI GCGCGC 1 cut(s) 48
BseSI GKGCMC 2 cut(s) 221, 355
BseXI GCAGC 2 cut(s) 144, 145
Bsh1236I CGCG 1 cut(s) 50
Bsh1285I CGRYCG 1 cut(s) 252
BshFI GGCC 1 cut(s) 353
BsiEI CGRYCG 1 cut(s) 252
BsiHKAI GWGCWC 1 cut(s) 221
BsiSI CCGG 7 cut(s) 121, 137, 230, 248, 258, 275, 362
BsiWI CGTACG 1 cut(s) 177
BslI CCNNNNNNNGG 3 cut(s) 41, 44, 361
BsmAI GTCTC 1 cut(s) 66
BsmBI CGTCTC 1 cut(s) 66
BsnI GGCC 1 cut(s) 353
Bsp120I GGGCCC 1 cut(s) 351
Bsp1286I GDGCHC 2 cut(s) 221, 355
Bsp13I TCCGGA 1 cut(s) 361
Bsp143I GATC 1 cut(s) 287
BspACI CCGC 5 cut(s) 35, 45, 61, 164, 302
BspANI GGCC 1 cut(s) 353
BspCNI CTCAG 1 cut(s) 313
BspEI TCCGGA 1 cut(s) 361
BspFNI CGCG 1 cut(s) 50
BspLI GGNNCC 4 cut(s) 99, 262, 352, 353
BspPI GGATC 1 cut(s) 295
BsrFI RCCGGY 5 cut(s) 120, 136, 229, 247, 274
BsrI ACTGG 1 cut(s) 390
BssAI RCCGGY 5 cut(s) 120, 136, 229, 247, 274
BssHII GCGCGC 1 cut(s) 48
BssMI GATC 1 cut(s) 287
Bst2UI CCWGG 1 cut(s) 11
Bst4CI ACNGT 2 cut(s) 93, 106
BstBAI YACGTR 1 cut(s) 41
BstC8I GCNNGC 6 cut(s) 50, 138, 162, 166, 200, 231
BstDEI CTNAG 1 cut(s) 321
BstF5I GGATG 1 cut(s) 352
BstFNI CGCG 1 cut(s) 50
BstHHI GCGC 3 cut(s) 50, 52, 307
BstKTI GATC 1 cut(s) 290
BstMAI GTCTC 1 cut(s) 66
BstMBI GATC 1 cut(s) 287
BstMCI CGRYCG 1 cut(s) 252
BstMWI GCNNNNNNNGC 3 cut(s) 58, 230, 326
BstNI CCWGG 1 cut(s) 11
BstSCI CCNGG 1 cut(s) 9
BstSLI GKGCMC 2 cut(s) 221, 355
BstUI CGCG 1 cut(s) 50
BstV1I GCAGC 2 cut(s) 144, 145
BstV2I GAAGAC 1 cut(s) 347
BsuRI GGCC 1 cut(s) 353
BtgZI GCGATG 1 cut(s) 254
BtsCI GGATG 1 cut(s) 352
Cac8I GCNNGC 6 cut(s) 50, 138, 162, 166, 200, 231
CfoI GCGC 3 cut(s) 50, 52, 307
Cfr10I RCCGGY 5 cut(s) 120, 136, 229, 247, 274
Cfr13I GGNCC 2 cut(s) 351, 352
CseI GACGC 2 cut(s) 139, 388
CsiI ACCWGGT 1 cut(s) 9
Csp6I GTAC 2 cut(s) 178, 316
CviAII CATG 1 cut(s) 172
CviQI GTAC 2 cut(s) 178, 316
DdeI CTNAG 1 cut(s) 321
DpnI GATC 1 cut(s) 289
DpnII GATC 1 cut(s) 287
DraI TTTAAA 1 cut(s) 85
EciI GGCGGA 1 cut(s) 24
Eco24I GRGCYC 1 cut(s) 355
Eco57I CTGAAG 1 cut(s) 359
Eco72I CACGTG 1 cut(s) 41
EcoO109I RGGNCCY 1 cut(s) 351
EcoRII CCWGG 1 cut(s) 9
EcoT38I GRGCYC 1 cut(s) 355
Esp3I CGTCTC 1 cut(s) 66
FaeI CATG 1 cut(s) 175
FaiI YATR 3 cut(s) 18, 173, 188
FatI CATG 1 cut(s) 171
FauI CCCGC 1 cut(s) 157
Fnu4HI GCNGC 4 cut(s) 46, 134, 158, 303
FokI GGATG 1 cut(s) 359
FriOI GRGCYC 1 cut(s) 355
Fsp4HI GCNGC 4 cut(s) 46, 134, 158, 303
GlaI GCGC 3 cut(s) 49, 51, 306
GluI GCNGC 4 cut(s) 46, 134, 158, 303
HaeIII GGCC 1 cut(s) 353
HapII CCGG 7 cut(s) 121, 137, 230, 248, 258, 275, 362
HgaI GACGC 2 cut(s) 139, 388
HhaI GCGC 3 cut(s) 50, 52, 307
Hin1II CATG 1 cut(s) 175
Hin6I GCGC 3 cut(s) 48, 50, 305
HinP1I GCGC 3 cut(s) 48, 50, 305
HincII GTYRAC 1 cut(s) 126
HindII GTYRAC 1 cut(s) 126
HinfI GANTC 3 cut(s) 31, 151, 397
HpaII CCGG 7 cut(s) 121, 137, 230, 248, 258, 275, 362
HphI GGTGA 2 cut(s) 289, 305
Hpy166II GTNNAC 3 cut(s) 126, 219, 373
Hpy188I TCNGA 3 cut(s) 117, 339, 402
Hpy188III TCNNGA 2 cut(s) 212, 362
Hpy8I GTNNAC 3 cut(s) 126, 219, 373
Hpy99I CGWCG 4 cut(s) 97, 133, 151, 382
HpyAV CCTTC 2 cut(s) 58, 274
HpyCH4III ACNGT 2 cut(s) 93, 106
HpyCH4IV ACGT 1 cut(s) 40
HpyCH4V TGCA 1 cut(s) 219
HpyF10VI GCNNNNNNNGC 3 cut(s) 58, 230, 326
HpyF3I CTNAG 1 cut(s) 321
HpySE526I ACGT 1 cut(s) 40
Hsp92II CATG 1 cut(s) 175
HspAI GCGC 3 cut(s) 48, 50, 305
Kpn2I TCCGGA 1 cut(s) 361
KroI GCCGGC 2 cut(s) 136, 229
KroNI GCCGGC 2 cut(s) 138, 231
Kzo9I GATC 1 cut(s) 287
LmnI GCTCC 2 cut(s) 103, 260
Lsp1109I GCAGC 2 cut(s) 144, 145
MabI ACCWGGT 1 cut(s) 9
MaeII ACGT 1 cut(s) 40
MaeIII GTNAC 1 cut(s) 5
MalI GATC 1 cut(s) 289
MboI GATC 1 cut(s) 287
MboII GAAGA 1 cut(s) 352
MhlI GDGCHC 2 cut(s) 221, 355
MmeI TCCRAC 1 cut(s) 125
MnlI CCTC 5 cut(s) 123, 188, 228, 289, 316
MroI TCCGGA 1 cut(s) 361
MroNI GCCGGC 2 cut(s) 136, 229
MseI TTAA 2 cut(s) 84, 108
MspI CCGG 7 cut(s) 121, 137, 230, 248, 258, 275, 362
MspR9I CCNGG 1 cut(s) 11
MvaI CCWGG 1 cut(s) 11
MvnI CGCG 1 cut(s) 50
MwoI GCNNNNNNNGC 3 cut(s) 58, 230, 326
NaeI GCCGGC 2 cut(s) 138, 231
NdeII GATC 1 cut(s) 287
NgoMIV GCCGGC 2 cut(s) 136, 229
NlaIII CATG 1 cut(s) 175
NlaIV GGNNCC 4 cut(s) 99, 262, 352, 353
NmeAIII GCCGAG 2 cut(s) 78, 250
PalAI GGCGCGCC 1 cut(s) 48
PauI GCGCGC 1 cut(s) 48
PdiI GCCGGC 2 cut(s) 138, 231
PfeI GAWTC 3 cut(s) 31, 151, 397
Pfl23II CGTACG 1 cut(s) 177
PkrI GCNGC 4 cut(s) 47, 135, 159, 304
PmaCI CACGTG 1 cut(s) 41
PmlI CACGTG 1 cut(s) 41
Ppu21I YACGTR 1 cut(s) 41
Psp6I CCWGG 1 cut(s) 9
PspCI CACGTG 1 cut(s) 41
PspGI CCWGG 1 cut(s) 9
PspLI CGTACG 1 cut(s) 177
PspN4I GGNNCC 4 cut(s) 99, 262, 352, 353
PspOMI GGGCCC 1 cut(s) 351
PspPI GGNCC 2 cut(s) 351, 352
PteI GCGCGC 1 cut(s) 48
RsaI GTAC 2 cut(s) 179, 317
RsaNI GTAC 2 cut(s) 178, 316
SaqAI TTAA 2 cut(s) 84, 108
SatI GCNGC 4 cut(s) 46, 134, 158, 303
Sau3AI GATC 1 cut(s) 287
Sau96I GGNCC 2 cut(s) 351, 352
ScrFI CCNGG 1 cut(s) 11
SduI GDGCHC 2 cut(s) 221, 355
SetI ASST 6 cut(s) 15, 43, 285, 300, 317, 327
SexAI ACCWGGT 1 cut(s) 9
SgsI GGCGCGCC 1 cut(s) 48
SsiI CCGC 5 cut(s) 35, 45, 61, 164, 302
StyD4I CCNGG 1 cut(s) 9
TaaI ACNGT 2 cut(s) 93, 106
TaiI ACGT 1 cut(s) 43
TaqI TCGA 2 cut(s) 149, 252
TauI GCSGC 2 cut(s) 48, 305
TfiI GAWTC 3 cut(s) 31, 151, 397
Tru1I TTAA 2 cut(s) 84, 108
Tru9I TTAA 2 cut(s) 84, 108
TseI GCWGC 2 cut(s) 133, 157
TspDTI ATGAA 3 cut(s) 5, 175, 257
TspGWI ACGGA 1 cut(s) 359
VneI GTGCAC 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.