RLG00000009695

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0010791
Physical Location & Seq
Forward (+)
56508580 .. 56509312
733 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009695

Sequence Viewer

Length: 432 bp
ATGAGTTACCAGGTCCATAACAGCCGTAGGATTCCGCCACGTGGCGGCGGGCCGAGAAAGCGGAAGGAGAGAGACGATGGCTTTAAACAACCGTCGGCTCCAACTGTCAAGCCTCCGAGCCGGTCAACGAAGCAGCCGGCTGTGTCGTCGAATCGGCTGCTGGCGGGCTACATGGCATACGAGTTTATAACCAGAGGCACGCTGTTGGGTCAGGAGTGCACAGCCGAGCCGGCGAGGGCGATGAAGCCGGTCGAAGCCGGAGCCGATGATGAGCCGGTGAAGGTGGGATCGGGTGAGGTTGCGGCGCAGGATAGGTACGCTGAGGTGGCGACCATTCTGAAGACGGATGGGGCCCACATTCCGGAGATTAATTTGAACGACGACGACGACGTTGAAGAAGAAGAAGAAGCGAGACAATGTTGTTGCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

15.66

Weight (kDa)

5.28

Isoelectric Point (pI)

70.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010791)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23440
fragaria_vesca FvH4_4g04100
malus_domestica MD13G1217500.v1.1 MD16G1222600.v1.1
prunus_persica Prupe.1G044300_v2.0.a1 Prupe.1G044300_v2.0.a1
pyrus_communis pycom13g19090 pycom16g18650
rosa_chinensis RchiOBHm_Chr4g0394481
rosa_laevigata RLG00000009695
rosa_multiflora Rmu_sc0000200.1_g000024 Rmu_sc0013311.1_g000001
rosa_roxburghii Rroxscaffold_5G00339510
rosa_rugosa Rorug03G0365800.1
rosa_samantha Rh4AG052300 Rh4BG050200 Rh4CG056600 Rh4DG049300
rosa_wichuraiana Rw0G003380 Rw4G004220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 188
AccIII TCCGGA 1 cut(s) 361
AciI CCGC 6 cut(s) 35, 45, 48, 61, 164, 302
AclWI GGATC 1 cut(s) 295
AcuI CTGAAG 1 cut(s) 359
AcvI CACGTG 1 cut(s) 41
AfaI GTAC 1 cut(s) 317
AfiI CCNNNNNNNGG 3 cut(s) 41, 44, 361
AgsI TTSAA 2 cut(s) 376, 395
AjnI CCWGG 1 cut(s) 9
Alw21I GWGCWC 1 cut(s) 221
Alw26I GTCTC 2 cut(s) 66, 406
Alw44I GTGCAC 1 cut(s) 217
AlwI GGATC 1 cut(s) 295
Aor13HI TCCGGA 1 cut(s) 361
AoxI GGCC 2 cut(s) 50, 351
ApaI GGGCCC 1 cut(s) 355
ApaLI GTGCAC 1 cut(s) 217
ApeKI GCWGC 2 cut(s) 133, 157
AseI ATTAAT 1 cut(s) 369
AspLEI GCGC 1 cut(s) 307
AspS9I GGNCC 4 cut(s) 13, 50, 351, 352
AsuHPI GGTGA 2 cut(s) 289, 305
AvaII GGWCC 1 cut(s) 13
BaeGI GKGCMC 2 cut(s) 221, 355
BanII GRGCYC 1 cut(s) 355
BbrPI CACGTG 1 cut(s) 41
BbsI GAAGAC 1 cut(s) 347
Bbv12I GWGCWC 1 cut(s) 221
BbvCI CCTCAGC 1 cut(s) 321
BbvI GCAGC 2 cut(s) 144, 145
BccI CCATC 2 cut(s) 71, 341
BceAI ACGGC 1 cut(s) 9
BcgI CGANNNNNNTGC 2 cut(s) 139, 173
BciT130I CCWGG 1 cut(s) 11
BcoDI GTCTC 2 cut(s) 66, 406
BglI GCCNNNNNGGC 1 cut(s) 230
BisI GCNGC 4 cut(s) 46, 134, 158, 303
BlsI GCNGC 4 cut(s) 47, 135, 159, 304
Bme1390I CCNGG 1 cut(s) 11
Bme18I GGWCC 1 cut(s) 13
BmgT120I GGNCC 4 cut(s) 13, 50, 351, 352
BmiI GGNNCC 4 cut(s) 99, 262, 352, 353
BmrFI CCNGG 1 cut(s) 11
BpiI GAAGAC 1 cut(s) 347
Bpu10I CCTNAGC 1 cut(s) 321
BsaAI YACGTR 1 cut(s) 41
BsaWI WCCGGW 1 cut(s) 361
Bsc4I CCNNNNNNNGG 3 cut(s) 41, 44, 361
Bse118I RCCGGY 5 cut(s) 120, 136, 229, 247, 274
BseAI TCCGGA 1 cut(s) 361
BseBI CCWGG 1 cut(s) 11
BseGI GGATG 1 cut(s) 352
BseLI CCNNNNNNNGG 3 cut(s) 41, 44, 361
BseMII CTCAG 1 cut(s) 312
BseSI GKGCMC 2 cut(s) 221, 355
BseXI GCAGC 2 cut(s) 144, 145
Bsh1285I CGRYCG 1 cut(s) 252
BshFI GGCC 2 cut(s) 52, 353
BsiEI CGRYCG 1 cut(s) 252
BsiHKAI GWGCWC 1 cut(s) 221
BsiSI CCGG 7 cut(s) 121, 137, 230, 248, 258, 275, 362
BslI CCNNNNNNNGG 3 cut(s) 41, 44, 361
BsmAI GTCTC 2 cut(s) 66, 406
BsmBI CGTCTC 1 cut(s) 66
BsnI GGCC 2 cut(s) 52, 353
Bsp120I GGGCCC 1 cut(s) 351
Bsp1286I GDGCHC 2 cut(s) 221, 355
Bsp13I TCCGGA 1 cut(s) 361
Bsp143I GATC 1 cut(s) 287
BspACI CCGC 6 cut(s) 35, 45, 48, 61, 164, 302
BspANI GGCC 2 cut(s) 52, 353
BspCNI CTCAG 1 cut(s) 313
BspEI TCCGGA 1 cut(s) 361
BspLI GGNNCC 4 cut(s) 99, 262, 352, 353
BspPI GGATC 1 cut(s) 295
BsrFI RCCGGY 5 cut(s) 120, 136, 229, 247, 274
BssAI RCCGGY 5 cut(s) 120, 136, 229, 247, 274
BssMI GATC 1 cut(s) 287
Bst2UI CCWGG 1 cut(s) 11
Bst4CI ACNGT 2 cut(s) 93, 106
BstBAI YACGTR 1 cut(s) 41
BstC8I GCNNGC 6 cut(s) 50, 138, 162, 166, 200, 231
BstDEI CTNAG 1 cut(s) 321
BstF5I GGATG 1 cut(s) 352
BstHHI GCGC 1 cut(s) 307
BstKTI GATC 1 cut(s) 290
BstMAI GTCTC 2 cut(s) 66, 406
BstMBI GATC 1 cut(s) 287
BstMCI CGRYCG 1 cut(s) 252
BstMWI GCNNNNNNNGC 3 cut(s) 58, 230, 326
BstNI CCWGG 1 cut(s) 11
BstNSI RCATGY 1 cut(s) 430
BstSCI CCNGG 1 cut(s) 9
BstSLI GKGCMC 2 cut(s) 221, 355
BstV1I GCAGC 2 cut(s) 144, 145
BstV2I GAAGAC 1 cut(s) 347
BsuRI GGCC 2 cut(s) 52, 353
BtgZI GCGATG 1 cut(s) 254
BtsCI GGATG 1 cut(s) 352
Cac8I GCNNGC 6 cut(s) 50, 138, 162, 166, 200, 231
CfoI GCGC 1 cut(s) 307
Cfr10I RCCGGY 5 cut(s) 120, 136, 229, 247, 274
Cfr13I GGNCC 4 cut(s) 13, 50, 351, 352
CsiI ACCWGGT 1 cut(s) 9
Csp6I GTAC 1 cut(s) 316
CviAII CATG 2 cut(s) 172, 427
CviQI GTAC 1 cut(s) 316
DdeI CTNAG 1 cut(s) 321
DpnI GATC 1 cut(s) 289
DpnII GATC 1 cut(s) 287
DraI TTTAAA 1 cut(s) 85
EciI GGCGGA 1 cut(s) 24
Eco24I GRGCYC 1 cut(s) 355
Eco47I GGWCC 1 cut(s) 13
Eco57I CTGAAG 1 cut(s) 359
Eco72I CACGTG 1 cut(s) 41
EcoO109I RGGNCCY 1 cut(s) 351
EcoRII CCWGG 1 cut(s) 9
EcoT38I GRGCYC 1 cut(s) 355
Esp3I CGTCTC 1 cut(s) 66
FaeI CATG 2 cut(s) 175, 430
FaiI YATR 5 cut(s) 18, 173, 178, 188, 428
FatI CATG 2 cut(s) 171, 426
FauI CCCGC 2 cut(s) 41, 157
Fnu4HI GCNGC 4 cut(s) 46, 134, 158, 303
FokI GGATG 1 cut(s) 359
FriOI GRGCYC 1 cut(s) 355
Fsp4HI GCNGC 4 cut(s) 46, 134, 158, 303
GlaI GCGC 1 cut(s) 306
GluI GCNGC 4 cut(s) 46, 134, 158, 303
HaeIII GGCC 2 cut(s) 52, 353
HapII CCGG 7 cut(s) 121, 137, 230, 248, 258, 275, 362
HhaI GCGC 1 cut(s) 307
Hin1II CATG 2 cut(s) 175, 430
Hin6I GCGC 1 cut(s) 305
HinP1I GCGC 1 cut(s) 305
HincII GTYRAC 1 cut(s) 126
HindII GTYRAC 1 cut(s) 126
HinfI GANTC 2 cut(s) 31, 151
HpaII CCGG 7 cut(s) 121, 137, 230, 248, 258, 275, 362
HphI GGTGA 2 cut(s) 289, 305
Hpy166II GTNNAC 2 cut(s) 126, 219
Hpy188I TCNGA 2 cut(s) 117, 339
Hpy188III TCNNGA 2 cut(s) 212, 362
Hpy8I GTNNAC 2 cut(s) 126, 219
Hpy99I CGWCG 6 cut(s) 97, 151, 383, 386, 389, 392
HpyAV CCTTC 2 cut(s) 58, 274
HpyCH4III ACNGT 2 cut(s) 93, 106
HpyCH4IV ACGT 2 cut(s) 40, 390
HpyCH4V TGCA 2 cut(s) 219, 426
HpyF10VI GCNNNNNNNGC 3 cut(s) 58, 230, 326
HpyF3I CTNAG 1 cut(s) 321
HpySE526I ACGT 2 cut(s) 40, 390
Hsp92II CATG 2 cut(s) 175, 430
HspAI GCGC 1 cut(s) 305
Kpn2I TCCGGA 1 cut(s) 361
KroI GCCGGC 2 cut(s) 136, 229
KroNI GCCGGC 2 cut(s) 138, 231
Kzo9I GATC 1 cut(s) 287
LmnI GCTCC 2 cut(s) 103, 260
Lsp1109I GCAGC 2 cut(s) 144, 145
MabI ACCWGGT 1 cut(s) 9
MaeII ACGT 2 cut(s) 40, 390
MaeIII GTNAC 1 cut(s) 5
MalI GATC 1 cut(s) 289
MboI GATC 1 cut(s) 287
MboII GAAGA 5 cut(s) 352, 407, 410, 413, 416
MhlI GDGCHC 2 cut(s) 221, 355
MluCI AATT 1 cut(s) 370
MmeI TCCRAC 1 cut(s) 125
MnlI CCTC 5 cut(s) 123, 188, 228, 289, 316
MroI TCCGGA 1 cut(s) 361
MroNI GCCGGC 2 cut(s) 136, 229
MseI TTAA 2 cut(s) 84, 369
MspI CCGG 7 cut(s) 121, 137, 230, 248, 258, 275, 362
MspR9I CCNGG 1 cut(s) 11
MvaI CCWGG 1 cut(s) 11
MwoI GCNNNNNNNGC 3 cut(s) 58, 230, 326
NaeI GCCGGC 2 cut(s) 138, 231
NdeII GATC 1 cut(s) 287
NgoMIV GCCGGC 2 cut(s) 136, 229
NlaIII CATG 2 cut(s) 175, 430
NlaIV GGNNCC 4 cut(s) 99, 262, 352, 353
NmeAIII GCCGAG 2 cut(s) 78, 250
NspI RCATGY 1 cut(s) 430
PcsI WCGNNNNNNNCGW 2 cut(s) 384, 387
PdiI GCCGGC 2 cut(s) 138, 231
PfeI GAWTC 2 cut(s) 31, 151
PkrI GCNGC 4 cut(s) 47, 135, 159, 304
PmaCI CACGTG 1 cut(s) 41
PmlI CACGTG 1 cut(s) 41
Ppu21I YACGTR 1 cut(s) 41
PshBI ATTAAT 1 cut(s) 369
PsiI TTATAA 1 cut(s) 188
Psp6I CCWGG 1 cut(s) 9
PspCI CACGTG 1 cut(s) 41
PspGI CCWGG 1 cut(s) 9
PspN4I GGNNCC 4 cut(s) 99, 262, 352, 353
PspOMI GGGCCC 1 cut(s) 351
PspPI GGNCC 4 cut(s) 13, 50, 351, 352
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
SaqAI TTAA 2 cut(s) 84, 369
SatI GCNGC 4 cut(s) 46, 134, 158, 303
Sau3AI GATC 1 cut(s) 287
Sau96I GGNCC 4 cut(s) 13, 50, 351, 352
ScrFI CCNGG 1 cut(s) 11
SduI GDGCHC 2 cut(s) 221, 355
SetI ASST 7 cut(s) 15, 43, 285, 300, 317, 327, 393
SexAI ACCWGGT 1 cut(s) 9
SinI GGWCC 1 cut(s) 13
Sse9I AATT 1 cut(s) 370
SsiI CCGC 6 cut(s) 35, 45, 48, 61, 164, 302
StyD4I CCNGG 1 cut(s) 9
TaaI ACNGT 2 cut(s) 93, 106
TaiI ACGT 2 cut(s) 43, 393
TaqI TCGA 2 cut(s) 149, 252
TasI AATT 1 cut(s) 370
TauI GCSGC 2 cut(s) 48, 305
TfiI GAWTC 2 cut(s) 31, 151
Tru1I TTAA 2 cut(s) 84, 369
Tru9I TTAA 2 cut(s) 84, 369
TseI GCWGC 2 cut(s) 133, 157
TspDTI ATGAA 1 cut(s) 257
TspGWI ACGGA 1 cut(s) 359
VneI GTGCAC 1 cut(s) 217
VpaK11BI GGWCC 1 cut(s) 13
VspI ATTAAT 1 cut(s) 369
XceI RCATGY 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.