Prupe.1G044300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0010791
Physical Location & Seq
Reverse (-)
3157582 .. 3159685
2104 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G044300.1

Sequence Viewer

Length: 444 bp
ATGAGTTTCCAACAAAGCCATAGCCGTAGGATCGTGCCACCTGGCGCATCCAGAAAGCGAAAGGAGAGACAAGCCAATGCCTCGTCCAACGGCTTTAAACAGCCGGCTCCAAAGGCTCCAACCCCAAGCCAAACGACAGCTCCGGCTTTCTCGTCGAATCGGCTGCTGGCGGGCTACATGGCGTATGAGTATTTAACGAAGGGCACGCTGTTCGGTCAGAAGTTCGACCCGGCTCGAGCCGAGGCGGTGCCTCTGATGAGCTCGTCAGCCGAGCTGAGGAGGGGGAAGCCGGTCGAAGCCGGGAAAGTCGGGGCGGGCTCAGGTTCGGGTGTGGGTGCGGCGCAGGAGAGGTACGCTGAGGTGGCGAGCATGTTGAAGACGGATGGGGCCCACATTCCAGGGATTGTGAACCCGACGCAACTGGCGAAGTGGATTCAGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

15.63

Weight (kDa)

10.36

Isoelectric Point (pI)

55.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010791)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23440
fragaria_vesca FvH4_4g04100
malus_domestica MD13G1217500.v1.1 MD16G1222600.v1.1
prunus_persica Prupe.1G044300_v2.0.a1 Prupe.1G044300_v2.0.a1
pyrus_communis pycom13g19090 pycom16g18650
rosa_chinensis RchiOBHm_Chr4g0394481
rosa_laevigata RLG00000009695
rosa_multiflora Rmu_sc0000200.1_g000024 Rmu_sc0013311.1_g000001
rosa_roxburghii Rroxscaffold_5G00339510
rosa_rugosa Rorug03G0365800.1
rosa_samantha Rh4AG052300 Rh4BG050200 Rh4CG056600 Rh4DG049300
rosa_wichuraiana Rw0G003380 Rw4G004220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 247
AciI CCGC 4 cut(s) 170, 245, 314, 338
AclWI GGATC 1 cut(s) 38
AfaI GTAC 1 cut(s) 353
AfiI CCNNNNNNNGG 1 cut(s) 276
AgsI TTSAA 1 cut(s) 376
AjnI CCWGG 2 cut(s) 40, 397
AluBI AGCT 3 cut(s) 140, 261, 274
AluI AGCT 3 cut(s) 140, 261, 274
Alw21I GWGCWC 1 cut(s) 263
Alw26I GTCTC 1 cut(s) 61
AlwI GGATC 1 cut(s) 38
Ama87I CYCGRG 1 cut(s) 234
AoxI GGCC 1 cut(s) 387
ApaI GGGCCC 1 cut(s) 391
ApeKI GCWGC 1 cut(s) 163
AspLEI GCGC 2 cut(s) 47, 343
AspS9I GGNCC 2 cut(s) 387, 388
AsuC2I CCSGG 2 cut(s) 230, 301
AvaI CYCGRG 1 cut(s) 234
BaeGI GKGCMC 2 cut(s) 206, 391
BanI GGYRCC 1 cut(s) 247
BanII GRGCYC 3 cut(s) 263, 320, 391
BbsI GAAGAC 1 cut(s) 383
Bbv12I GWGCWC 1 cut(s) 263
BbvCI CCTCAGC 2 cut(s) 275, 357
BbvI GCAGC 1 cut(s) 150
BccI CCATC 1 cut(s) 377
BceAI ACGGC 2 cut(s) 9, 106
BcgI CGANNNNNNTGC 4 cut(s) 145, 179, 193, 227
BciT130I CCWGG 2 cut(s) 42, 399
BcnI CCSGG 2 cut(s) 230, 301
BcoDI GTCTC 1 cut(s) 61
BisI GCNGC 2 cut(s) 164, 339
BlsI GCNGC 2 cut(s) 165, 340
Bme1390I CCNGG 4 cut(s) 42, 230, 301, 399
BmeT110I CYCGRG 1 cut(s) 234
BmgT120I GGNCC 2 cut(s) 387, 388
BmiI GGNNCC 5 cut(s) 108, 117, 249, 388, 389
BmrFI CCNGG 4 cut(s) 42, 230, 301, 399
BmsI GCATC 1 cut(s) 56
BpiI GAAGAC 1 cut(s) 383
Bpu10I CCTNAGC 3 cut(s) 275, 319, 357
BpuMI CCSGG 2 cut(s) 230, 301
BsaJI CCNNGG 2 cut(s) 240, 398
BsaXI ACNNNNNCTCC 2 cut(s) 124, 154
Bsc4I CCNNNNNNNGG 1 cut(s) 276
Bse118I RCCGGY 2 cut(s) 103, 289
Bse1I ACTGG 1 cut(s) 426
BseBI CCWGG 2 cut(s) 42, 399
BseDI CCNNGG 2 cut(s) 240, 398
BseGI GGATG 2 cut(s) 47, 388
BseLI CCNNNNNNNGG 1 cut(s) 276
BseMII CTCAG 3 cut(s) 266, 333, 348
BseNI ACTGG 1 cut(s) 426
BseRI GAGGAG 1 cut(s) 292
BseSI GKGCMC 2 cut(s) 206, 391
BseXI GCAGC 1 cut(s) 150
Bsh1285I CGRYCG 1 cut(s) 294
BshFI GGCC 1 cut(s) 389
BshNI GGYRCC 1 cut(s) 247
BsiEI CGRYCG 1 cut(s) 294
BsiHKAI GWGCWC 1 cut(s) 263
BsiHKCI CYCGRG 1 cut(s) 234
BsiSI CCGG 5 cut(s) 104, 143, 230, 290, 300
BslI CCNNNNNNNGG 1 cut(s) 276
BsmAI GTCTC 1 cut(s) 61
BsnI GGCC 1 cut(s) 389
BsoBI CYCGRG 1 cut(s) 234
Bsp120I GGGCCC 1 cut(s) 387
Bsp1286I GDGCHC 4 cut(s) 206, 263, 320, 391
Bsp143I GATC 1 cut(s) 30
BspACI CCGC 4 cut(s) 170, 245, 314, 338
BspANI GGCC 1 cut(s) 389
BspCNI CTCAG 3 cut(s) 267, 332, 349
BspLI GGNNCC 5 cut(s) 108, 117, 249, 388, 389
BspPI GGATC 1 cut(s) 38
BspT107I GGYRCC 1 cut(s) 247
BsrFI RCCGGY 2 cut(s) 103, 289
BsrI ACTGG 1 cut(s) 426
BssAI RCCGGY 2 cut(s) 103, 289
BssECI CCNNGG 2 cut(s) 240, 398
BssMI GATC 1 cut(s) 30
Bst2UI CCWGG 2 cut(s) 42, 399
BstC8I GCNNGC 6 cut(s) 105, 168, 172, 206, 316, 367
BstDEI CTNAG 3 cut(s) 275, 319, 357
BstF5I GGATG 2 cut(s) 47, 388
BstHHI GCGC 2 cut(s) 47, 343
BstKTI GATC 1 cut(s) 33
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 1 cut(s) 30
BstMCI CGRYCG 1 cut(s) 294
BstMWI GCNNNNNNNGC 2 cut(s) 113, 362
BstNI CCWGG 2 cut(s) 42, 399
BstNSI RCATGY 1 cut(s) 373
BstSCI CCNGG 4 cut(s) 40, 228, 299, 397
BstSLI GKGCMC 2 cut(s) 206, 391
BstV1I GCAGC 1 cut(s) 150
BstV2I GAAGAC 1 cut(s) 383
BsuRI GGCC 1 cut(s) 389
BtsCI GGATG 2 cut(s) 47, 388
Cac8I GCNNGC 6 cut(s) 105, 168, 172, 206, 316, 367
CfoI GCGC 2 cut(s) 47, 343
Cfr10I RCCGGY 2 cut(s) 103, 289
Cfr13I GGNCC 2 cut(s) 387, 388
CseI GACGC 1 cut(s) 424
Csp6I GTAC 1 cut(s) 352
CviAII CATG 2 cut(s) 178, 370
CviQI GTAC 1 cut(s) 352
DdeI CTNAG 3 cut(s) 275, 319, 357
DpnI GATC 1 cut(s) 32
DpnII GATC 1 cut(s) 30
DraI TTTAAA 1 cut(s) 97
Ecl136II GAGCTC 1 cut(s) 261
Eco24I GRGCYC 3 cut(s) 263, 320, 391
Eco53kI GAGCTC 1 cut(s) 261
Eco88I CYCGRG 1 cut(s) 234
EcoICRI GAGCTC 1 cut(s) 261
EcoO109I RGGNCCY 1 cut(s) 387
EcoRII CCWGG 2 cut(s) 40, 397
EcoT38I GRGCYC 3 cut(s) 263, 320, 391
FaeI CATG 2 cut(s) 181, 373
FaiI YATR 4 cut(s) 21, 179, 186, 371
FatI CATG 2 cut(s) 177, 369
FauI CCCGC 2 cut(s) 163, 307
Fnu4HI GCNGC 2 cut(s) 164, 339
FokI GGATG 2 cut(s) 34, 395
FriOI GRGCYC 3 cut(s) 263, 320, 391
Fsp4HI GCNGC 2 cut(s) 164, 339
GlaI GCGC 2 cut(s) 46, 342
GluI GCNGC 2 cut(s) 164, 339
HaeIII GGCC 1 cut(s) 389
HapII CCGG 5 cut(s) 104, 143, 230, 290, 300
HgaI GACGC 1 cut(s) 424
HhaI GCGC 2 cut(s) 47, 343
Hin1II CATG 2 cut(s) 181, 373
Hin6I GCGC 2 cut(s) 45, 341
HinP1I GCGC 2 cut(s) 45, 341
HinfI GANTC 2 cut(s) 157, 433
HpaII CCGG 5 cut(s) 104, 143, 230, 290, 300
Hpy166II GTNNAC 1 cut(s) 409
Hpy188I TCNGA 3 cut(s) 219, 255, 438
Hpy188III TCNNGA 1 cut(s) 51
Hpy8I GTNNAC 1 cut(s) 409
Hpy99I CGWCG 2 cut(s) 157, 418
HpyAV CCTTC 1 cut(s) 193
HpyF10VI GCNNNNNNNGC 2 cut(s) 113, 362
HpyF3I CTNAG 3 cut(s) 275, 319, 357
Hsp92II CATG 2 cut(s) 181, 373
HspAI GCGC 2 cut(s) 45, 341
KroI GCCGGC 1 cut(s) 103
KroNI GCCGGC 1 cut(s) 105
Kzo9I GATC 1 cut(s) 30
LmnI GCTCC 3 cut(s) 112, 121, 145
Lsp1109I GCAGC 1 cut(s) 150
LweI GCATC 1 cut(s) 56
MalI GATC 1 cut(s) 32
MboI GATC 1 cut(s) 30
MboII GAAGA 1 cut(s) 388
MhlI GDGCHC 4 cut(s) 206, 263, 320, 391
MmeI TCCRAC 3 cut(s) 34, 111, 143
MnlI CCTC 7 cut(s) 91, 235, 261, 270, 273, 342, 352
MroNI GCCGGC 1 cut(s) 103
MseI TTAA 2 cut(s) 96, 194
MspI CCGG 5 cut(s) 104, 143, 230, 290, 300
MspR9I CCNGG 4 cut(s) 42, 230, 301, 399
MvaI CCWGG 2 cut(s) 42, 399
MwoI GCNNNNNNNGC 2 cut(s) 113, 362
NaeI GCCGGC 1 cut(s) 105
NciI CCSGG 2 cut(s) 230, 301
NdeII GATC 1 cut(s) 30
NgoMIV GCCGGC 1 cut(s) 103
NlaIII CATG 2 cut(s) 181, 373
NlaIV GGNNCC 5 cut(s) 108, 117, 249, 388, 389
NmeAIII GCCGAG 2 cut(s) 265, 295
NspI RCATGY 1 cut(s) 373
PaeR7I CTCGAG 1 cut(s) 234
PcsI WCGNNNNNNNCGW 1 cut(s) 422
PdiI GCCGGC 1 cut(s) 105
PfeI GAWTC 2 cut(s) 157, 433
PkrI GCNGC 2 cut(s) 165, 340
Psp124BI GAGCTC 1 cut(s) 263
Psp6I CCWGG 2 cut(s) 40, 397
PspGI CCWGG 2 cut(s) 40, 397
PspN4I GGNNCC 5 cut(s) 108, 117, 249, 388, 389
PspOMI GGGCCC 1 cut(s) 387
PspPI GGNCC 2 cut(s) 387, 388
PspXI VCTCGAGB 1 cut(s) 234
RsaI GTAC 1 cut(s) 353
RsaNI GTAC 1 cut(s) 352
SacI GAGCTC 1 cut(s) 263
SaqAI TTAA 2 cut(s) 96, 194
SatI GCNGC 2 cut(s) 164, 339
Sau3AI GATC 1 cut(s) 30
Sau96I GGNCC 2 cut(s) 387, 388
ScrFI CCNGG 4 cut(s) 42, 230, 301, 399
SduI GDGCHC 4 cut(s) 206, 263, 320, 391
SetI ASST 7 cut(s) 43, 142, 263, 276, 325, 353, 363
SfaNI GCATC 1 cut(s) 56
Sfr274I CTCGAG 1 cut(s) 234
SlaI CTCGAG 1 cut(s) 234
SmlI CTYRAG 1 cut(s) 234
SmoI CTYRAG 1 cut(s) 234
SsiI CCGC 4 cut(s) 170, 245, 314, 338
SstI GAGCTC 1 cut(s) 263
StyD4I CCNGG 4 cut(s) 40, 228, 299, 397
TaqI TCGA 4 cut(s) 155, 225, 235, 294
TaqII GACCGA 1 cut(s) 203
TauI GCSGC 1 cut(s) 341
TfiI GAWTC 2 cut(s) 157, 433
Tru1I TTAA 2 cut(s) 96, 194
Tru9I TTAA 2 cut(s) 96, 194
TseI GCWGC 1 cut(s) 163
TspGWI ACGGA 1 cut(s) 395
XceI RCATGY 1 cut(s) 373
XhoI CTCGAG 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.