Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015375

Physical Location & Seq

Genomic Coordinates Forward (+)

8480025 .. 8482222

Gene Structure 2198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G23620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGATGGAAATACGAACTCCGAAGACTGGCAAAGCCAAGCGTGTTCTCGAAAGCCGAGCTCCTAAGTTGGTTGAAACTGGGAAGAAGACGTTGATACTTCATGGAACAAAGACGAGTGCTACACTTAGCTCTGTAATGACGGAACTCTACCGTTTGAAGAAGGGAGGTGCCATCAGATATTCAAGGAGGAATGAGAATATTAGGCCTTTCGAGAGTGGAGGTGAAACTTCATTAGAGTTCTTCTCTCAGAAAACAGATTGTAGCATTTTTGTGTATGGTTCTCACACGAAGAAACGACCTGACAATCTTGTACTTGGGAGAATGTATGATCACCAAGTCTATGATCTTATAGAAGTTGGGATTGAGAACTTTAAATCCTTGCGGGCGTTTTCGTATGACAAGAAATTCGCACCTCATGAAGGAACAAAGCCTTTCATTTGCTTTATTGGTGAAGGTTTTGAGAATGTATCAGAGCTTAAGCATCTCAAAGAAGTCCTCACTGATCTTTTTCGTGGCGAGGTTGTGGATAATCTAAATCTTACTGGTTTAGACCGCGCTTACGTATGTTCAGCTATATCCCCAACAAAGGTTTTCCTTACTCATTGCGCATTGAAGCTTAAAAAGTCAGGATCCATTGTTCCGAGAATGGAGCTTGTTGAAGTCGGTCCATCCATGGACTTGGTTATCAGGCGTAATCGTCTTCCTAACGATAGCTTAATGAAAGAAGCAATGAGAACATCCAAGGATAAGCCTAAGAAGAAGGAGAAAAACGTTGATCAAGATGCAGTACTAGGGAAGACTGGGAAGATTTATATGCCTGATCAGAAGCTGAAAGAAATGAAACTGTTCGATAAATCTAAGGGATCGAAGAGAGAGCGGAAAGACGCTAAGCTTAAGCATAAGGAAGAGACTGTTGCCAAAAAGATGAAGGTGTCTTCTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0000463 GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Brix

Protein Analysis

314

Amino Acids

35.73

Weight (kDa)

9.74

Isoelectric Point (pI)

31.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Brix	PF04427	35 - 231	7.2e-39	Brix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23620
fragaria_vesca	FvH4_6g17900
malus_domestica	MD12G1018000.v1.1 MD14G1016000.v1.1
prunus_persica	Prupe.7G117100_v2.0.a1
pyrus_communis	pycom12g01500 pycom14g01380
rosa_chinensis	RchiOBHm_Chr3g0472151
rosa_laevigata	RLG00000012848 RLG00000024101
rosa_multiflora	Rmu_sc0002532.1_g000027
rosa_roxburghii	Rroxscaffold_6G00409200
rosa_rugosa	Rorug03G0122700
rosa_samantha	Rh3AG174500 Rh3CG191000
rosa_wichuraiana	Rw3G016640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	607
AccB1I	GGYRCC	1 cut(s)	167
AccBSI	CCGCTC	1 cut(s)	877
AccII	CGCG	1 cut(s)	555
AciI	CCGC	3 cut(s)	382, 553, 877
AclI	AACGTT	1 cut(s)	771
AclWI	GGATC	3 cut(s)	624, 637, 871
AcsI	RAATTY	1 cut(s)	404
AfaI	GTAC	2 cut(s)	312, 789
AfiI	CCNNNNNNNGG	3 cut(s)	26, 419, 586
AflII	CTTAAG	2 cut(s)	476, 893
AgsI	TTSAA	5 cut(s)	74, 157, 183, 613, 659
AloI	GAACNNNNNNTCC	4 cut(s)	359, 391, 621, 653
AluBI	AGCT	9 cut(s)	59, 129, 475, 572, 616, 652, 714, 829, 892
AluI	AGCT	9 cut(s)	59, 129, 475, 572, 616, 652, 714, 829, 892
Alw21I	GWGCWC	1 cut(s)	61
Alw26I	GTCTC	1 cut(s)	902
AlwI	GGATC	3 cut(s)	624, 637, 871
AlwNI	CAGNNNCTG	1 cut(s)	829
AoxI	GGCC	1 cut(s)	203
ApoI	RAATTY	1 cut(s)	404
ArsI	GACNNNNNNTTYG	2 cut(s)	389, 421
Asp700I	GAANNNNTTC	1 cut(s)	845
AspLEI	GCGC	2 cut(s)	557, 608
AspS9I	GGNCC	1 cut(s)	665
AsuHPI	GGTGA	3 cut(s)	233, 323, 461
AvaII	GGWCC	1 cut(s)	665
BamHI	GGATCC	1 cut(s)	629
BanI	GGYRCC	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	61
BbsI	GAAGAC	5 cut(s)	29, 92, 692, 803, 927
Bbv12I	GWGCWC	1 cut(s)	61
BccI	CCATC	2 cut(s)	179, 676
BclI	TGATCA	3 cut(s)	328, 775, 820
BcoDI	GTCTC	1 cut(s)	902
BfaI	CTAG	1 cut(s)	791
BfrI	CTTAAG	2 cut(s)	476, 893
BlpI	GCTNAGC	1 cut(s)	888
BmcAI	AGTACT	1 cut(s)	789
Bme18I	GGWCC	1 cut(s)	665
BmgT120I	GGNCC	1 cut(s)	665
BmiI	GGNNCC	2 cut(s)	169, 631
BmrI	ACTGGG	2 cut(s)	87, 810
BmsI	GCATC	2 cut(s)	490, 772
BmuI	ACTGGG	2 cut(s)	87, 810
BpiI	GAAGAC	5 cut(s)	29, 92, 692, 803, 927
BplI	GAGNNNNNCTC	2 cut(s)	227, 259
Bpu1102I	GCTNAGC	1 cut(s)	888
BsaAI	YACGTR	1 cut(s)	562
BsaJI	CCNNGG	2 cut(s)	672, 741
Bsc4I	CCNNNNNNNGG	3 cut(s)	26, 419, 586
Bse1I	ACTGG	4 cut(s)	31, 82, 547, 805
Bse3DI	GCAATG	2 cut(s)	601, 735
BseDI	CCNNGG	2 cut(s)	672, 741
BseGI	GGATG	2 cut(s)	668, 737
BseLI	CCNNNNNNNGG	3 cut(s)	26, 419, 586
BseMI	GCAATG	2 cut(s)	601, 735
BseMII	CTCAG	2 cut(s)	260, 930
BseNI	ACTGG	4 cut(s)	31, 82, 547, 805
Bsh1236I	CGCG	1 cut(s)	555
BshFI	GGCC	1 cut(s)	205
BshNI	GGYRCC	1 cut(s)	167
BsiHKAI	GWGCWC	1 cut(s)	61
BslI	CCNNNNNNNGG	3 cut(s)	26, 419, 586
BsmAI	GTCTC	1 cut(s)	902
BsnI	GGCC	1 cut(s)	205
Bsp1286I	GDGCHC	1 cut(s)	61
Bsp143I	GATC	7 cut(s)	328, 343, 502, 629, 775, 820, 863
Bsp1720I	GCTNAGC	1 cut(s)	888
Bsp19I	CCATGG	1 cut(s)	672
BspACI	CCGC	3 cut(s)	382, 553, 877
BspANI	GGCC	1 cut(s)	205
BspCNI	CTCAG	2 cut(s)	259, 931
BspFNI	CGCG	1 cut(s)	555
BspHI	TCATGA	1 cut(s)	415
BspLI	GGNNCC	2 cut(s)	169, 631
BspPI	GGATC	3 cut(s)	624, 637, 871
BspT107I	GGYRCC	1 cut(s)	167
BspTI	CTTAAG	2 cut(s)	476, 893
BsrBI	CCGCTC	1 cut(s)	877
BsrDI	GCAATG	2 cut(s)	601, 735
BsrI	ACTGG	4 cut(s)	31, 82, 547, 805
BssECI	CCNNGG	2 cut(s)	672, 741
BssMI	GATC	7 cut(s)	328, 343, 502, 629, 775, 820, 863
BssT1I	CCWWGG	2 cut(s)	672, 741
Bst4CI	ACNGT	3 cut(s)	152, 846, 913
Bst6I	CTCTTC	2 cut(s)	863, 900
BstAFI	CTTAAG	2 cut(s)	476, 893
BstBAI	YACGTR	1 cut(s)	562
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	7 cut(s)	63, 125, 246, 753, 858, 888, 939
BstDSI	CCRYGG	1 cut(s)	672
BstENI	CCTNNNNNAGG	1 cut(s)	417
BstF5I	GGATG	2 cut(s)	668, 737
BstFNI	CGCG	1 cut(s)	555
BstHHI	GCGC	2 cut(s)	557, 608
BstKTI	GATC	7 cut(s)	331, 346, 505, 632, 778, 823, 866
BstMAI	GTCTC	1 cut(s)	902
BstMBI	GATC	7 cut(s)	328, 343, 502, 629, 775, 820, 863
BstSNI	TACGTA	1 cut(s)	562
BstUI	CGCG	1 cut(s)	555
BstV2I	GAAGAC	5 cut(s)	29, 92, 692, 803, 927
BstX2I	RGATCY	1 cut(s)	629
BstXI	CCANNNNNNTGG	1 cut(s)	679
BstYI	RGATCY	1 cut(s)	629
BsuRI	GGCC	1 cut(s)	205
BtgI	CCRYGG	1 cut(s)	672
BtsCI	GGATG	2 cut(s)	668, 737
BtsIMutI	CAGTG	1 cut(s)	498
Cac8I	GCNNGC	1 cut(s)	384
CaiI	CAGNNNCTG	1 cut(s)	829
CciI	TCATGA	1 cut(s)	415
CfoI	GCGC	2 cut(s)	557, 608
Cfr13I	GGNCC	1 cut(s)	665
CseI	GACGC	1 cut(s)	893
Csp6I	GTAC	2 cut(s)	311, 788
CviAII	CATG	3 cut(s)	101, 416, 673
CviQI	GTAC	2 cut(s)	311, 788
DdeI	CTNAG	7 cut(s)	63, 125, 246, 753, 858, 888, 939
DpnI	GATC	7 cut(s)	330, 345, 504, 631, 777, 822, 865
DpnII	GATC	7 cut(s)	328, 343, 502, 629, 775, 820, 863
DraI	TTTAAA	1 cut(s)	373
Eam1104I	CTCTTC	2 cut(s)	863, 900
EarI	CTCTTC	2 cut(s)	863, 900
Ecl136II	GAGCTC	1 cut(s)	59
Eco105I	TACGTA	1 cut(s)	562
Eco130I	CCWWGG	2 cut(s)	672, 741
Eco147I	AGGCCT	1 cut(s)	205
Eco24I	GRGCYC	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	665
Eco53kI	GAGCTC	1 cut(s)	59
EcoICRI	GAGCTC	1 cut(s)	59
EcoNI	CCTNNNNNAGG	1 cut(s)	417
EcoT14I	CCWWGG	2 cut(s)	672, 741
EcoT38I	GRGCYC	1 cut(s)	61
ErhI	CCWWGG	2 cut(s)	672, 741
FaeI	CATG	3 cut(s)	104, 419, 676
FatI	CATG	3 cut(s)	100, 415, 672
FauI	CCCGC	1 cut(s)	375
FbaI	TGATCA	3 cut(s)	328, 775, 820
FokI	GGATG	2 cut(s)	655, 724
FriOI	GRGCYC	1 cut(s)	61
FspBI	CTAG	1 cut(s)	791
FspI	TGCGCA	1 cut(s)	607
GlaI	GCGC	2 cut(s)	556, 607
HaeIII	GGCC	1 cut(s)	205
HgaI	GACGC	1 cut(s)	893
HhaI	GCGC	2 cut(s)	557, 608
Hin1II	CATG	3 cut(s)	104, 419, 676
Hin6I	GCGC	2 cut(s)	555, 606
HinP1I	GCGC	2 cut(s)	555, 606
HindIII	AAGCTT	2 cut(s)	614, 890
HphI	GGTGA	3 cut(s)	233, 323, 461
Hpy188I	TCNGA	7 cut(s)	21, 176, 249, 472, 642, 825, 940
Hpy188III	TCNNGA	5 cut(s)	47, 211, 416, 627, 779
HpyAV	CCTTC	5 cut(s)	154, 413, 446, 754, 922
HpyCH4III	ACNGT	3 cut(s)	152, 846, 913
HpyCH4IV	ACGT	3 cut(s)	89, 561, 771
HpyCH4V	TGCA	1 cut(s)	785
HpyF3I	CTNAG	7 cut(s)	63, 125, 246, 753, 858, 888, 939
HpySE526I	ACGT	3 cut(s)	89, 561, 771
Hsp92II	CATG	3 cut(s)	104, 419, 676
HspAI	GCGC	2 cut(s)	555, 606
Ksp22I	TGATCA	3 cut(s)	328, 775, 820
Kzo9I	GATC	7 cut(s)	328, 343, 502, 629, 775, 820, 863
LmnI	GCTCC	2 cut(s)	64, 649
LpnPI	CCDG	8 cut(s)	12, 63, 312, 528, 612, 673, 786, 831
LweI	GCATC	2 cut(s)	490, 772
MaeI	CTAG	1 cut(s)	791
MaeII	ACGT	3 cut(s)	89, 561, 771
MalI	GATC	7 cut(s)	330, 345, 504, 631, 777, 822, 865
MbiI	CCGCTC	1 cut(s)	877
MboI	GATC	7 cut(s)	328, 343, 502, 629, 775, 820, 863
MflI	RGATCY	1 cut(s)	629
MhlI	GDGCHC	1 cut(s)	61
MluCI	AATT	1 cut(s)	404
MnlI	CCTC	6 cut(s)	158, 180, 212, 423, 506, 511
MroXI	GAANNNNTTC	1 cut(s)	845
MseI	TTAA	5 cut(s)	372, 477, 618, 716, 894
MslI	CAYNNNNRTG	1 cut(s)	269
MspCI	CTTAAG	2 cut(s)	476, 893
MvnI	CGCG	1 cut(s)	555
NcoI	CCATGG	1 cut(s)	672
NdeII	GATC	7 cut(s)	328, 343, 502, 629, 775, 820, 863
NlaIII	CATG	3 cut(s)	104, 419, 676
NlaIV	GGNNCC	2 cut(s)	169, 631
NmeAIII	GCCGAG	1 cut(s)	80
NsbI	TGCGCA	1 cut(s)	607
PagI	TCATGA	1 cut(s)	415
PceI	AGGCCT	1 cut(s)	205
PdmI	GAANNNNTTC	1 cut(s)	845
Ppu21I	YACGTR	1 cut(s)	562
Psp124BI	GAGCTC	1 cut(s)	61
Psp1406I	AACGTT	1 cut(s)	771
PspN4I	GGNNCC	2 cut(s)	169, 631
PspPI	GGNCC	1 cut(s)	665
PstNI	CAGNNNCTG	1 cut(s)	829
PsuI	RGATCY	1 cut(s)	629
RsaI	GTAC	2 cut(s)	312, 789
RsaNI	GTAC	2 cut(s)	311, 788
RseI	CAYNNNNRTG	1 cut(s)	269
SacI	GAGCTC	1 cut(s)	61
SaqAI	TTAA	5 cut(s)	372, 477, 618, 716, 894
Sau3AI	GATC	7 cut(s)	328, 343, 502, 629, 775, 820, 863
Sau96I	GGNCC	1 cut(s)	665
ScaI	AGTACT	1 cut(s)	789
SduI	GDGCHC	1 cut(s)	61
SfaNI	GCATC	2 cut(s)	490, 772
SinI	GGWCC	1 cut(s)	665
SmiMI	CAYNNNNRTG	1 cut(s)	269
SmlI	CTYRAG	2 cut(s)	476, 893
SmoI	CTYRAG	2 cut(s)	476, 893
SnaBI	TACGTA	1 cut(s)	562
Sse9I	AATT	1 cut(s)	404
SseBI	AGGCCT	1 cut(s)	205
SsiI	CCGC	3 cut(s)	382, 553, 877
SspI	AATATT	1 cut(s)	199
SspMI	CTAG	1 cut(s)	791
SstI	GAGCTC	1 cut(s)	61
StuI	AGGCCT	1 cut(s)	205
StyI	CCWWGG	2 cut(s)	672, 741
TaaI	ACNGT	3 cut(s)	152, 846, 913
TaiI	ACGT	3 cut(s)	92, 564, 774
TaqI	TCGA	4 cut(s)	48, 210, 849, 866
TaqII	GACCGA	1 cut(s)	653
TasI	AATT	1 cut(s)	404
TatI	WGTACW	2 cut(s)	310, 787
Tru1I	TTAA	5 cut(s)	372, 477, 618, 716, 894
Tru9I	TTAA	5 cut(s)	372, 477, 618, 716, 894
TscAI	CASTG	1 cut(s)	505
TspDTI	ATGAA	7 cut(s)	89, 219, 424, 432, 734, 854, 941
TspGWI	ACGGA	1 cut(s)	155
TspRI	CASTG	1 cut(s)	505
Vha464I	CTTAAG	2 cut(s)	476, 893
VpaK11BI	GGWCC	1 cut(s)	665
XagI	CCTNNNNNAGG	1 cut(s)	417
XapI	RAATTY	1 cut(s)	404
XmnI	GAANNNNTTC	1 cut(s)	845
XspI	CTAG	1 cut(s)	791
ZrmI	AGTACT	1 cut(s)	789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.