Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0015375

Physical Location & Seq

Genomic Coordinates Reverse (-)

1223490 .. 1224204

Gene Structure 715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g01500.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGAACTAGTTGAAGTTGGCCCCTCCATGGATTTAGTAGTTCGTCGGCATCGTCTTCCTAATGAAAGCCTTAGGAAAGAAGCAATGAGAGAAGGCAAAAATCAGCCCAAGAAGGACAAGAATATTAAACAAGACCTACTGCGGGGCAAGGTTGGGAAACTCAACATCCCGGATCAAAAGATTGGAGATACGGTGTATTATCACACAAAGGTTGGTGATACATTTGTGCCGAGCAAAACAAAGGGAGTTAAAAGGGAGCGCCGTGAAGCTAGAATGAAACACGAAGGTAATGAGCGTGCACCAAAGGTTCAAGACATGCTTGAGCCCAAGAAAACAAAAAAACTTAAAAGGGAGCGACGTGATCCTACAGCTACTGAGGATGCCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0000463 GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Brix

Protein Analysis

130

Amino Acids

15.01

Weight (kDa)

9.99

Isoelectric Point (pI)

44.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23620
fragaria_vesca	FvH4_6g17900
malus_domestica	MD12G1018000.v1.1 MD14G1016000.v1.1
prunus_persica	Prupe.7G117100_v2.0.a1
pyrus_communis	pycom12g01500 pycom14g01380
rosa_chinensis	RchiOBHm_Chr3g0472151
rosa_laevigata	RLG00000012848 RLG00000024101
rosa_multiflora	Rmu_sc0002532.1_g000027
rosa_roxburghii	Rroxscaffold_6G00409200
rosa_rugosa	Rorug03G0122700
rosa_samantha	Rh3AG174500 Rh3CG191000
rosa_wichuraiana	Rw3G016640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	142
AclWI	GGATC	2 cut(s)	180, 356
AfiI	CCNNNNNNNGG	2 cut(s)	28, 142
AgsI	TTSAA	2 cut(s)	14, 311
AhlI	ACTAGT	1 cut(s)	7
AjiI	CACGTC	1 cut(s)	359
AluBI	AGCT	2 cut(s)	269, 371
AluI	AGCT	2 cut(s)	269, 371
Alw21I	GWGCWC	1 cut(s)	301
Alw44I	GTGCAC	1 cut(s)	297
AlwI	GGATC	2 cut(s)	180, 356
AlwNI	CAGNNNCTG	1 cut(s)	374
AoxI	GGCC	1 cut(s)	19
ApaLI	GTGCAC	1 cut(s)	297
AspLEI	GCGC	1 cut(s)	261
AspS9I	GGNCC	1 cut(s)	20
AsuC2I	CCSGG	1 cut(s)	170
AsuHPI	GGTGA	1 cut(s)	227
AxyI	CCTNAGG	1 cut(s)	71
BaeGI	GKGCMC	1 cut(s)	301
BaeI	ACNNNNGTAYC	2 cut(s)	210, 243
BanII	GRGCYC	1 cut(s)	327
BbsI	GAAGAC	1 cut(s)	47
Bbv12I	GWGCWC	1 cut(s)	301
BceAI	ACGGC	1 cut(s)	246
BcnI	CCSGG	1 cut(s)	170
BcuI	ACTAGT	1 cut(s)	7
BfaI	CTAG	2 cut(s)	8, 270
BfmI	CTRYAG	1 cut(s)	366
BfoI	RGCGCY	1 cut(s)	262
Bme1390I	CCNGG	1 cut(s)	170
BmgBI	CACGTC	1 cut(s)	359
BmgT120I	GGNCC	1 cut(s)	20
BmiI	GGNNCC	1 cut(s)	22
BmrFI	CCNGG	1 cut(s)	170
BmsI	GCATC	2 cut(s)	58, 370
BpiI	GAAGAC	1 cut(s)	47
BpuEI	CTTGAG	1 cut(s)	341
BpuMI	CCSGG	1 cut(s)	170
BsaJI	CCNNGG	1 cut(s)	27
BsaXI	ACNNNNNCTCC	2 cut(s)	177, 207
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 142
Bse21I	CCTNAGG	1 cut(s)	71
Bse3DI	GCAATG	1 cut(s)	90
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	2 cut(s)	165, 385
BseLI	CCNNNNNNNGG	2 cut(s)	28, 142
BseMI	GCAATG	1 cut(s)	90
BseMII	CTCAG	1 cut(s)	366
BseSI	GKGCMC	1 cut(s)	301
BshFI	GGCC	1 cut(s)	21
BsiHKAI	GWGCWC	1 cut(s)	301
BsiSI	CCGG	1 cut(s)	170
BslI	CCNNNNNNNGG	2 cut(s)	28, 142
BsnI	GGCC	1 cut(s)	21
Bsp1286I	GDGCHC	2 cut(s)	301, 327
Bsp143I	GATC	2 cut(s)	172, 361
Bsp19I	CCATGG	1 cut(s)	27
BspACI	CCGC	1 cut(s)	142
BspANI	GGCC	1 cut(s)	21
BspCNI	CTCAG	1 cut(s)	367
BspLI	GGNNCC	1 cut(s)	22
BspPI	GGATC	2 cut(s)	180, 356
BsrDI	GCAATG	1 cut(s)	90
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	2 cut(s)	172, 361
BssT1I	CCWWGG	1 cut(s)	27
Bst4CI	ACNGT	1 cut(s)	193
BstC8I	GCNNGC	1 cut(s)	297
BstDEI	CTNAG	2 cut(s)	71, 375
BstDSI	CCRYGG	1 cut(s)	27
BstF5I	GGATG	2 cut(s)	165, 385
BstH2I	RGCGCY	1 cut(s)	262
BstHHI	GCGC	1 cut(s)	261
BstKTI	GATC	2 cut(s)	175, 364
BstMBI	GATC	2 cut(s)	172, 361
BstNSI	RCATGY	1 cut(s)	319
BstSCI	CCNGG	1 cut(s)	168
BstSFI	CTRYAG	1 cut(s)	366
BstSLI	GKGCMC	1 cut(s)	301
BstV2I	GAAGAC	1 cut(s)	47
Bsu36I	CCTNAGG	1 cut(s)	71
BsuRI	GGCC	1 cut(s)	21
BtgI	CCRYGG	1 cut(s)	27
BtrI	CACGTC	1 cut(s)	359
BtsCI	GGATG	2 cut(s)	165, 385
Cac8I	GCNNGC	1 cut(s)	297
CaiI	CAGNNNCTG	1 cut(s)	374
CfoI	GCGC	1 cut(s)	261
Cfr13I	GGNCC	1 cut(s)	20
CviAII	CATG	2 cut(s)	28, 316
CviJI	RGCY	6 cut(s)	21, 69, 106, 269, 325, 371
CviKI_1	RGCY	6 cut(s)	21, 69, 106, 269, 325, 371
DdeI	CTNAG	2 cut(s)	71, 375
DpnI	GATC	2 cut(s)	174, 363
DpnII	GATC	2 cut(s)	172, 361
Eco130I	CCWWGG	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	327
Eco81I	CCTNAGG	1 cut(s)	71
EcoT14I	CCWWGG	1 cut(s)	27
EcoT38I	GRGCYC	1 cut(s)	327
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	2 cut(s)	31, 319
FaiI	YATR	2 cut(s)	29, 317
FalI	AAGNNNNNCTT	2 cut(s)	303, 335
FatI	CATG	2 cut(s)	27, 315
FauI	CCCGC	1 cut(s)	135
FokI	GGATG	1 cut(s)	152
FriOI	GRGCYC	1 cut(s)	327
FspBI	CTAG	2 cut(s)	8, 270
GlaI	GCGC	1 cut(s)	260
HaeII	RGCGCY	1 cut(s)	262
HaeIII	GGCC	1 cut(s)	21
HapII	CCGG	1 cut(s)	170
HhaI	GCGC	1 cut(s)	261
Hin1II	CATG	2 cut(s)	31, 319
Hin6I	GCGC	1 cut(s)	259
HinP1I	GCGC	1 cut(s)	259
HpaII	CCGG	1 cut(s)	170
HphI	GGTGA	1 cut(s)	227
Hpy166II	GTNNAC	1 cut(s)	299
Hpy188III	TCNNGA	1 cut(s)	311
Hpy8I	GTNNAC	1 cut(s)	299
Hpy99I	CGWCG	2 cut(s)	48, 360
HpyAV	CCTTC	3 cut(s)	86, 106, 278
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4IV	ACGT	1 cut(s)	358
HpyCH4V	TGCA	1 cut(s)	299
HpyF3I	CTNAG	2 cut(s)	71, 375
HpySE526I	ACGT	1 cut(s)	358
Hsp92II	CATG	2 cut(s)	31, 319
HspAI	GCGC	1 cut(s)	259
Kzo9I	GATC	2 cut(s)	172, 361
LmnI	GCTCC	2 cut(s)	256, 352
LpnPI	CCDG	1 cut(s)	183
LweI	GCATC	2 cut(s)	58, 370
MaeI	CTAG	2 cut(s)	8, 270
MaeII	ACGT	1 cut(s)	358
MalI	GATC	2 cut(s)	174, 363
MboI	GATC	2 cut(s)	172, 361
MboII	GAAGA	1 cut(s)	47
MhlI	GDGCHC	2 cut(s)	301, 327
MnlI	CCTC	2 cut(s)	34, 370
MseI	TTAA	3 cut(s)	126, 249, 345
MspI	CCGG	1 cut(s)	170
MspR9I	CCNGG	1 cut(s)	170
NciI	CCSGG	1 cut(s)	170
NcoI	CCATGG	1 cut(s)	27
NdeII	GATC	2 cut(s)	172, 361
NlaIII	CATG	2 cut(s)	31, 319
NlaIV	GGNNCC	1 cut(s)	22
NmeAIII	GCCGAG	1 cut(s)	255
NspI	RCATGY	1 cut(s)	319
PcsI	WCGNNNNNNNCGW	1 cut(s)	49
PfoI	TCCNGGA	1 cut(s)	168
PspN4I	GGNNCC	1 cut(s)	22
PspPI	GGNCC	1 cut(s)	20
PstNI	CAGNNNCTG	1 cut(s)	374
SaqAI	TTAA	3 cut(s)	126, 249, 345
Sau3AI	GATC	2 cut(s)	172, 361
Sau96I	GGNCC	1 cut(s)	20
ScrFI	CCNGG	1 cut(s)	170
SduI	GDGCHC	2 cut(s)	301, 327
SetI	ASST	8 cut(s)	138, 153, 213, 271, 289, 309, 361, 373
SfaNI	GCATC	2 cut(s)	58, 370
SfcI	CTRYAG	1 cut(s)	366
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
SpeI	ACTAGT	1 cut(s)	7
SsiI	CCGC	1 cut(s)	142
SspI	AATATT	1 cut(s)	124
SspMI	CTAG	2 cut(s)	8, 270
StyD4I	CCNGG	1 cut(s)	168
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	1 cut(s)	193
TaiI	ACGT	1 cut(s)	361
Tru1I	TTAA	3 cut(s)	126, 249, 345
Tru9I	TTAA	3 cut(s)	126, 249, 345
TspDTI	ATGAA	2 cut(s)	78, 290
VneI	GTGCAC	1 cut(s)	297
XceI	RCATGY	1 cut(s)	319
XspI	CTAG	2 cut(s)	8, 270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.