Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015375

Physical Location & Seq

Genomic Coordinates Reverse (-)

17964083 .. 17966881

Gene Structure 2799 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43787

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGTTGAGAGTGAAAACTCCCCAGAAGGCGAGGGCCAGAAGAGCGCTCGAGAAGCGTGCCCCCAAGCTCATCGAGACCGGGAAGAAGACTCTGATACTCCACGGCATGAGAACCAGCGCCGTCTTGAACGCGGTGTTATCAGACATTTACCATTTAAAGAAGGAGAGCGCCGTGAAATTCAGCCGCCGGAATAAGGATGTCTGCCCTTTCGAAAATGGTGGTGAGACCTCGCTTGAGTTCTTTTCGCATCAAACCGATTGCAGTCTTTTTGTTTATGGTTCTCATACAAAGAAGCGGCCCAACAATCTTGTCCTAGGGAGAACATATGATCACCATATCTATGATCTTATAGAGGTTGGGGTTGAGAACTATAAACGCATGGACTCATTTTCATATGATAAGAAACTATCTCCACACGTGGGGTCGAAGCCTTTCATTTGTTTTATTGGAGAAGGATTTGAGAGCGTAGAAGAGCTGAAACATTTGAAGGAGGTTTTGCTTGATCTGTTGCGAGGAGAGGTTGTAGAGAAACTAAATCTTGCTGGGTTAGATCGTGTATATCTATGTACAGCTATATCCGCAAACAAAGTGATCCTTACACAGTGTGCACTGCGACTGAAAAAGTCTGGCACAGTAGTTCCAAGGACTGAACTGGTAGAAGTTGGACCCTCCATGGATTTGGTAATTCGTCGGCATCGTCTTCCTAATGTTGGCCTAAGGAAAGAAGCCATGAGAGTGGTTAGAGATCAGCCTAAGAAGGACAAAAATATTCAACAGGACACACTGCGAGGCAAGGTTGGCAAAATCAATATTCCAGATCAGAAGGTTGATGACACGAAGTATTTCCACACAAAGGTTGGAGATTCGTATGTGCCTCACAAGACAAAAGGAATTAAAAGGGAGCGCCGTGAAGCTAAAACGAGAAAGGAGGAAAAAGAGGGCGATGAGAATGCATCAAAAAGGCAGAAGGAAGATACTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0000463 GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Brix

Protein Analysis

327

Amino Acids

37.46

Weight (kDa)

9.69

Isoelectric Point (pI)

41.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Brix	PF04427	37 - 231	4.5e-38	Brix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23620
fragaria_vesca	FvH4_6g17900
malus_domestica	MD12G1018000.v1.1 MD14G1016000.v1.1
prunus_persica	Prupe.7G117100_v2.0.a1
pyrus_communis	pycom12g01500 pycom14g01380
rosa_chinensis	RchiOBHm_Chr3g0472151
rosa_laevigata	RLG00000012848 RLG00000024101
rosa_multiflora	Rmu_sc0002532.1_g000027
rosa_roxburghii	Rroxscaffold_6G00409200
rosa_rugosa	Rorug03G0122700
rosa_samantha	Rh3AG174500 Rh3CG191000
rosa_wichuraiana	Rw3G016640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	131
AciI	CCGC	4 cut(s)	131, 184, 295, 579
AclWI	GGATC	1 cut(s)	586
AcsI	RAATTY	1 cut(s)	176
AcvI	CACGTG	1 cut(s)	418
AdeI	CACNNNGTG	1 cut(s)	605
AfaI	GTAC	1 cut(s)	568
AfeI	AGCGCT	1 cut(s)	45
AfiI	CCNNNNNNNGG	4 cut(s)	193, 419, 710, 853
AflIII	ACRYGT	1 cut(s)	415
AgsI	TTSAA	3 cut(s)	127, 487, 773
AluBI	AGCT	4 cut(s)	67, 475, 572, 914
AluI	AGCT	4 cut(s)	67, 475, 572, 914
Alw21I	GWGCWC	1 cut(s)	610
Alw26I	GTCTC	2 cut(s)	68, 218
Alw44I	GTGCAC	1 cut(s)	606
AlwI	GGATC	1 cut(s)	586
Ama87I	CYCGRG	1 cut(s)	47
Aor51HI	AGCGCT	1 cut(s)	45
AoxI	GGCC	3 cut(s)	33, 296, 712
ApaLI	GTGCAC	1 cut(s)	606
ApoI	RAATTY	1 cut(s)	176
Asp700I	GAANNNNTTC	2 cut(s)	431, 842
AspA2I	CCTAGG	1 cut(s)	313
AspLEI	GCGC	4 cut(s)	46, 119, 170, 906
AspS9I	GGNCC	3 cut(s)	33, 297, 665
AsuC2I	CCSGG	1 cut(s)	79
AsuHPI	GGTGA	2 cut(s)	233, 323
AsuII	TTCGAA	1 cut(s)	210
AvaI	CYCGRG	1 cut(s)	47
AvaII	GGWCC	1 cut(s)	665
AvrII	CCTAGG	1 cut(s)	313
AxyI	CCTNAGG	1 cut(s)	716
BaeGI	GKGCMC	2 cut(s)	61, 610
BbrPI	CACGTG	1 cut(s)	418
BbsI	GAAGAC	2 cut(s)	92, 692
Bbv12I	GWGCWC	1 cut(s)	610
BceAI	ACGGC	4 cut(s)	104, 118, 155, 891
BcgI	CGANNNNNNTGC	4 cut(s)	38, 72, 932, 966
BclI	TGATCA	1 cut(s)	328
BcnI	CCSGG	1 cut(s)	79
BcoDI	GTCTC	2 cut(s)	68, 218
BfaI	CTAG	1 cut(s)	314
BfoI	RGCGCY	4 cut(s)	47, 120, 171, 907
BisI	GCNGC	2 cut(s)	184, 296
BlnI	CCTAGG	1 cut(s)	313
BlsI	GCNGC	2 cut(s)	185, 297
Bme1390I	CCNGG	1 cut(s)	79
Bme18I	GGWCC	1 cut(s)	665
BmeT110I	CYCGRG	1 cut(s)	47
BmgT120I	GGNCC	3 cut(s)	33, 297, 665
BmiI	GGNNCC	1 cut(s)	667
BmrFI	CCNGG	1 cut(s)	79
BmsI	GCATC	3 cut(s)	256, 703, 962
BpiI	GAAGAC	2 cut(s)	92, 692
Bpu14I	TTCGAA	1 cut(s)	210
BpuEI	CTTGAG	1 cut(s)	254
BpuMI	CCSGG	1 cut(s)	79
BsaAI	YACGTR	1 cut(s)	418
BsaI	GGTCTC	2 cut(s)	68, 218
BsaJI	CCNNGG	4 cut(s)	100, 313, 641, 672
BsaXI	ACNNNNNCTCC	2 cut(s)	507, 537
Bsc4I	CCNNNNNNNGG	4 cut(s)	193, 419, 710, 853
Bse1I	ACTGG	1 cut(s)	657
Bse21I	CCTNAGG	1 cut(s)	716
BseDI	CCNNGG	4 cut(s)	100, 313, 641, 672
BseGI	GGATG	1 cut(s)	202
BseLI	CCNNNNNNNGG	4 cut(s)	193, 419, 710, 853
BseMII	CTCAG	1 cut(s)	969
BseNI	ACTGG	1 cut(s)	657
BseRI	GAGGAG	1 cut(s)	528
BseSI	GKGCMC	2 cut(s)	61, 610
BseYI	CCCAGC	1 cut(s)	542
Bsh1236I	CGCG	1 cut(s)	131
BshFI	GGCC	3 cut(s)	35, 298, 714
BsiHKAI	GWGCWC	1 cut(s)	610
BsiHKCI	CYCGRG	1 cut(s)	47
BsiSI	CCGG	2 cut(s)	78, 187
BslI	CCNNNNNNNGG	4 cut(s)	193, 419, 710, 853
BsmAI	GTCTC	2 cut(s)	68, 218
BsmI	GAATGC	1 cut(s)	955
BsnI	GGCC	3 cut(s)	35, 298, 714
Bso31I	GGTCTC	2 cut(s)	68, 218
BsoBI	CYCGRG	1 cut(s)	47
Bsp119I	TTCGAA	1 cut(s)	210
Bsp1286I	GDGCHC	2 cut(s)	61, 610
Bsp1407I	TGTACA	1 cut(s)	566
Bsp143I	GATC	7 cut(s)	328, 343, 502, 550, 591, 745, 817
Bsp19I	CCATGG	1 cut(s)	672
BspACI	CCGC	4 cut(s)	131, 184, 295, 579
BspANI	GGCC	3 cut(s)	35, 298, 714
BspCNI	CTCAG	1 cut(s)	970
BspFNI	CGCG	1 cut(s)	131
BspLI	GGNNCC	1 cut(s)	667
BspPI	GGATC	1 cut(s)	586
BspQI	GCTCTTC	2 cut(s)	34, 465
BspT104I	TTCGAA	1 cut(s)	210
BspTNI	GGTCTC	2 cut(s)	68, 218
BsrGI	TGTACA	1 cut(s)	566
BsrI	ACTGG	1 cut(s)	657
BssECI	CCNNGG	4 cut(s)	100, 313, 641, 672
BssMI	GATC	7 cut(s)	328, 343, 502, 550, 591, 745, 817
BssT1I	CCWWGG	3 cut(s)	313, 641, 672
Bst4CI	ACNGT	2 cut(s)	603, 634
Bst6I	CTCTTC	2 cut(s)	34, 465
BstAUI	TGTACA	1 cut(s)	566
BstBAI	YACGTR	1 cut(s)	418
BstBI	TTCGAA	1 cut(s)	210
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	3 cut(s)	716, 753, 978
BstDSI	CCRYGG	2 cut(s)	100, 672
BstF5I	GGATG	1 cut(s)	202
BstFNI	CGCG	1 cut(s)	131
BstH2I	RGCGCY	4 cut(s)	47, 120, 171, 907
BstHHI	GCGC	4 cut(s)	46, 119, 170, 906
BstKTI	GATC	7 cut(s)	331, 346, 505, 553, 594, 748, 820
BstMAI	GTCTC	2 cut(s)	68, 218
BstMBI	GATC	7 cut(s)	328, 343, 502, 550, 591, 745, 817
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 52, 578, 798
BstSCI	CCNGG	1 cut(s)	77
BstSLI	GKGCMC	2 cut(s)	61, 610
BstUI	CGCG	1 cut(s)	131
BstV2I	GAAGAC	2 cut(s)	92, 692
BstXI	CCANNNNNNTGG	2 cut(s)	679, 736
Bsu36I	CCTNAGG	1 cut(s)	716
BsuRI	GGCC	3 cut(s)	35, 298, 714
BtgI	CCRYGG	2 cut(s)	100, 672
BtgZI	GCGATG	1 cut(s)	957
BtsCI	GGATG	1 cut(s)	202
BtsI	GCAGTG	2 cut(s)	608, 782
BtsIMutI	CAGTG	3 cut(s)	608, 608, 782
Cac8I	GCNNGC	1 cut(s)	57
CfoI	GCGC	4 cut(s)	46, 119, 170, 906
Cfr13I	GGNCC	3 cut(s)	33, 297, 665
Csp6I	GTAC	1 cut(s)	567
CviAII	CATG	4 cut(s)	106, 379, 673, 730
CviQI	GTAC	1 cut(s)	567
DdeI	CTNAG	3 cut(s)	716, 753, 978
DpnI	GATC	7 cut(s)	330, 345, 504, 552, 593, 747, 819
DpnII	GATC	7 cut(s)	328, 343, 502, 550, 591, 745, 817
DraI	TTTAAA	1 cut(s)	156
DraIII	CACNNNGTG	1 cut(s)	605
Eam1104I	CTCTTC	2 cut(s)	34, 465
EarI	CTCTTC	2 cut(s)	34, 465
Eco130I	CCWWGG	3 cut(s)	313, 641, 672
Eco31I	GGTCTC	2 cut(s)	68, 218
Eco47I	GGWCC	1 cut(s)	665
Eco47III	AGCGCT	1 cut(s)	45
Eco72I	CACGTG	1 cut(s)	418
Eco81I	CCTNAGG	1 cut(s)	716
Eco88I	CYCGRG	1 cut(s)	47
EcoT14I	CCWWGG	3 cut(s)	313, 641, 672
EcoT22I	ATGCAT	1 cut(s)	955
ErhI	CCWWGG	3 cut(s)	313, 641, 672
FaeI	CATG	4 cut(s)	109, 382, 676, 733
FalI	AAGNNNNNCTT	2 cut(s)	579, 611
FatI	CATG	4 cut(s)	105, 378, 672, 729
FauNDI	CATATG	2 cut(s)	325, 394
FbaI	TGATCA	1 cut(s)	328
Fnu4HI	GCNGC	2 cut(s)	184, 296
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	2 cut(s)	184, 296
FspBI	CTAG	1 cut(s)	314
GlaI	GCGC	4 cut(s)	45, 118, 169, 905
GluI	GCNGC	2 cut(s)	184, 296
GsaI	CCCAGC	1 cut(s)	546
HaeII	RGCGCY	4 cut(s)	47, 120, 171, 907
HaeIII	GGCC	3 cut(s)	35, 298, 714
HapII	CCGG	2 cut(s)	78, 187
HhaI	GCGC	4 cut(s)	46, 119, 170, 906
Hin1II	CATG	4 cut(s)	109, 382, 676, 733
Hin6I	GCGC	4 cut(s)	44, 117, 168, 904
HinP1I	GCGC	4 cut(s)	44, 117, 168, 904
HinfI	GANTC	3 cut(s)	88, 383, 863
HpaII	CCGG	2 cut(s)	78, 187
HphI	GGTGA	2 cut(s)	233, 323
Hpy166II	GTNNAC	1 cut(s)	608
Hpy188I	TCNGA	3 cut(s)	93, 142, 822
Hpy188III	TCNNGA	4 cut(s)	49, 73, 124, 815
Hpy8I	GTNNAC	1 cut(s)	608
Hpy99I	CGWCG	1 cut(s)	693
HpyAV	CCTTC	7 cut(s)	19, 154, 446, 481, 751, 817, 961
HpyCH4III	ACNGT	2 cut(s)	603, 634
HpyCH4IV	ACGT	1 cut(s)	417
HpyCH4V	TGCA	3 cut(s)	261, 608, 953
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 52, 578, 798
HpyF3I	CTNAG	3 cut(s)	716, 753, 978
HpySE526I	ACGT	1 cut(s)	417
Hsp92II	CATG	4 cut(s)	109, 382, 676, 733
HspAI	GCGC	4 cut(s)	44, 117, 168, 904
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	7 cut(s)	328, 343, 502, 550, 591, 745, 817
LguI	GCTCTTC	2 cut(s)	34, 465
LmnI	GCTCC	1 cut(s)	901
LweI	GCATC	3 cut(s)	256, 703, 962
MaeI	CTAG	1 cut(s)	314
MaeII	ACGT	1 cut(s)	417
MalI	GATC	7 cut(s)	330, 345, 504, 552, 593, 747, 819
MboI	GATC	7 cut(s)	328, 343, 502, 550, 591, 745, 817
MboII	GAAGA	6 cut(s)	51, 94, 97, 482, 692, 983
MhlI	GDGCHC	2 cut(s)	61, 610
MluCI	AATT	3 cut(s)	176, 684, 891
MlyI	GAGTC	2 cut(s)	82, 377
MmeI	TCCRAC	2 cut(s)	643, 838
Mph1103I	ATGCAT	1 cut(s)	955
MroXI	GAANNNNTTC	2 cut(s)	431, 842
MseI	TTAA	2 cut(s)	155, 894
MslI	CAYNNNNRTG	2 cut(s)	339, 734
MspI	CCGG	2 cut(s)	78, 187
MspR9I	CCNGG	1 cut(s)	79
Mva1269I	GAATGC	1 cut(s)	955
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	4 cut(s)	41, 52, 578, 798
NciI	CCSGG	1 cut(s)	79
NcoI	CCATGG	1 cut(s)	672
NdeI	CATATG	2 cut(s)	325, 394
NdeII	GATC	7 cut(s)	328, 343, 502, 550, 591, 745, 817
NlaIII	CATG	4 cut(s)	109, 382, 676, 733
NlaIV	GGNNCC	1 cut(s)	667
NsiI	ATGCAT	1 cut(s)	955
NspV	TTCGAA	1 cut(s)	210
PaeR7I	CTCGAG	1 cut(s)	47
PciSI	GCTCTTC	2 cut(s)	34, 465
PcsI	WCGNNNNNNNCGW	1 cut(s)	694
PctI	GAATGC	1 cut(s)	955
PdmI	GAANNNNTTC	2 cut(s)	431, 842
PfeI	GAWTC	1 cut(s)	863
PkrI	GCNGC	2 cut(s)	185, 297
PleI	GAGTC	2 cut(s)	82, 377
PmaCI	CACGTG	1 cut(s)	418
PmlI	CACGTG	1 cut(s)	418
PpsI	GAGTC	2 cut(s)	82, 377
Ppu21I	YACGTR	1 cut(s)	418
PspCI	CACGTG	1 cut(s)	418
PspFI	CCCAGC	1 cut(s)	542
PspN4I	GGNNCC	1 cut(s)	667
PspPI	GGNCC	3 cut(s)	33, 297, 665
RsaI	GTAC	1 cut(s)	568
RsaNI	GTAC	1 cut(s)	567
RseI	CAYNNNNRTG	2 cut(s)	339, 734
SapI	GCTCTTC	2 cut(s)	34, 465
SaqAI	TTAA	2 cut(s)	155, 894
SatI	GCNGC	2 cut(s)	184, 296
Sau3AI	GATC	7 cut(s)	328, 343, 502, 550, 591, 745, 817
Sau96I	GGNCC	3 cut(s)	33, 297, 665
SchI	GAGTC	2 cut(s)	82, 377
ScrFI	CCNGG	1 cut(s)	79
SduI	GDGCHC	2 cut(s)	61, 610
SfaNI	GCATC	3 cut(s)	256, 703, 962
Sfr274I	CTCGAG	1 cut(s)	47
SfuI	TTCGAA	1 cut(s)	210
SinI	GGWCC	1 cut(s)	665
SlaI	CTCGAG	1 cut(s)	47
SmiMI	CAYNNNNRTG	2 cut(s)	339, 734
SmlI	CTYRAG	2 cut(s)	47, 233
SmoI	CTYRAG	2 cut(s)	47, 233
Sse9I	AATT	3 cut(s)	176, 684, 891
SsiI	CCGC	4 cut(s)	131, 184, 295, 579
SspI	AATATT	2 cut(s)	769, 811
SspMI	CTAG	1 cut(s)	314
StyD4I	CCNGG	1 cut(s)	77
StyI	CCWWGG	3 cut(s)	313, 641, 672
TaaI	ACNGT	2 cut(s)	603, 634
TaiI	ACGT	1 cut(s)	420
TaqI	TCGA	4 cut(s)	48, 72, 210, 425
TasI	AATT	3 cut(s)	176, 684, 891
TatI	WGTACW	1 cut(s)	566
TauI	GCSGC	2 cut(s)	186, 298
TfiI	GAWTC	1 cut(s)	863
Tru1I	TTAA	2 cut(s)	155, 894
Tru9I	TTAA	2 cut(s)	155, 894
TscAI	CASTG	3 cut(s)	608, 615, 789
TspDTI	ATGAA	2 cut(s)	381, 424
TspRI	CASTG	3 cut(s)	608, 615, 789
VneI	GTGCAC	1 cut(s)	606
VpaK11BI	GGWCC	1 cut(s)	665
XapI	RAATTY	1 cut(s)	176
XcmI	CCANNNNNNNNNTGG	1 cut(s)	854
XhoI	CTCGAG	1 cut(s)	47
XmaJI	CCTAGG	1 cut(s)	313
XmnI	GAANNNNTTC	2 cut(s)	431, 842
XspI	CTAG	1 cut(s)	314
Zsp2I	ATGCAT	1 cut(s)	955

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.