Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0015375

Physical Location & Seq

Genomic Coordinates Reverse (-)

11744704 .. 11747785

Gene Structure 3082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g17900.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGTTGAGAATCAAAACTCCCCAGAAGGCCAGGGCCAGAAGAGAGCTCGAGAAGCGTGCCCCCAAGCTCATCGAGACGGGGAAGAAGACTTTGATACTTCACGGAACGAAAACCAGCGCTGTGTTGAACGCGGTTTTATCGGACATTTACCATTTGAAGAAGGAGAGCGCGGTCAAATTCAGCCGGAAGAATAAGGACGTTTGCCCTTTTGAAAATGGCGGCGAGACCTCGCTGGAGTTCTTTTCTCATCAGACGGATTGCAGTCTTTTTGTTTATGGTTCTCATACAAAGAAGCGGCCCAACAATCTTGTCTTAGGGAGAACATACGATCACCATATTTACGATCTTATAGAGGTTGGGGTTGAAAACTATAAACGCATGGACTCATTTTCATTTGATAAGAAACTATCTCCACATGTGGGATCAAAGCCTTTCATTTGTTTTATTGGAGAAGGATTTGAGAATGTACAAGAGCTTAAACATTTGAAGGAAGTTCTGCTTGATCTGTTCCGAGGAGAGGTTGTAGAGAAACTAAATCTTGCGGGATTAGATCGTGTATATCTATGTTCAGCTATATCTGCAAACAAAGTGATCCTCACACAGTGTGCGCTGCGACTGAAAAAGTCTGGCACAGTAGTTCCAAGGACTGAATTGGTAGAAGTTGGACCCTCCATGGATTTGGTAGTTCGTCGGCATCGTCTTCCTAATGATAACCTAAGGAAAGAAGCCATGAGAGTAGTTAGAGATCAGCCTAGGAAGGACAAAAATATTATGCAAGACACACTGCGAGGCAAGGTTGGCAAAATCAATATTCCAGATCAGAAGGTTGATGACACGAAGTATTTCCACACAAAGGTTGGGGATTCATATGTGCCTCACAAGACAAAAGGAATTAAAAGGGAGCGCCGTGAAGCTAAAATGAAAAAGGAGGAAAAAGAGGGTGATGAGCACGCATCAAAGAGGCAGAAGGAAGATTCTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0000463 GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Brix

Protein Analysis

328

Amino Acids

37.58

Weight (kDa)

9.64

Isoelectric Point (pI)

37.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Brix	PF04427	35 - 231	3.2e-40	Brix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23620
fragaria_vesca	FvH4_6g17900
malus_domestica	MD12G1018000.v1.1 MD14G1016000.v1.1
prunus_persica	Prupe.7G117100_v2.0.a1
pyrus_communis	pycom12g01500 pycom14g01380
rosa_chinensis	RchiOBHm_Chr3g0472151
rosa_laevigata	RLG00000012848 RLG00000024101
rosa_multiflora	Rmu_sc0002532.1_g000027
rosa_roxburghii	Rroxscaffold_6G00409200
rosa_rugosa	Rorug03G0122700
rosa_samantha	Rh3AG174500 Rh3CG191000
rosa_wichuraiana	Rw3G016640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	131, 170
AciI	CCGC	5 cut(s)	131, 170, 219, 295, 542
AclWI	GGATC	2 cut(s)	430, 586
AcsI	RAATTY	1 cut(s)	176
AdeI	CACNNNGTG	2 cut(s)	603, 605
AfaI	GTAC	1 cut(s)	468
AfeI	AGCGCT	1 cut(s)	118
AfiI	CCNNNNNNNGG	3 cut(s)	419, 517, 853
AflIII	ACRYGT	1 cut(s)	415
AgsI	TTSAA	5 cut(s)	127, 157, 212, 365, 487
AjnI	CCWGG	1 cut(s)	29
AluBI	AGCT	5 cut(s)	46, 67, 475, 572, 914
AluI	AGCT	5 cut(s)	46, 67, 475, 572, 914
Alw21I	GWGCWC	2 cut(s)	48, 951
Alw26I	GTCTC	2 cut(s)	68, 218
AlwI	GGATC	2 cut(s)	430, 586
Ama87I	CYCGRG	1 cut(s)	47
Aor51HI	AGCGCT	1 cut(s)	118
AoxI	GGCC	3 cut(s)	27, 33, 296
ApeKI	GCWGC	1 cut(s)	610
ApoI	RAATTY	1 cut(s)	176
Asp700I	GAANNNNTTC	1 cut(s)	842
AspA2I	CCTAGG	1 cut(s)	752
AspLEI	GCGC	4 cut(s)	119, 170, 610, 906
AspS9I	GGNCC	3 cut(s)	33, 297, 665
AsuHPI	GGTGA	2 cut(s)	323, 953
AvaI	CYCGRG	1 cut(s)	47
AvaII	GGWCC	1 cut(s)	665
AvrII	CCTAGG	1 cut(s)	752
AxyI	CCTNAGG	1 cut(s)	716
BaeGI	GKGCMC	1 cut(s)	61
BanII	GRGCYC	1 cut(s)	48
BbsI	GAAGAC	2 cut(s)	92, 692
Bbv12I	GWGCWC	2 cut(s)	48, 951
BbvI	GCAGC	1 cut(s)	597
BceAI	ACGGC	1 cut(s)	891
BcgI	CGANNNNNNTGC	2 cut(s)	38, 72
BciT130I	CCWGG	1 cut(s)	31
BcoDI	GTCTC	2 cut(s)	68, 218
BfaI	CTAG	1 cut(s)	753
BfoI	RGCGCY	2 cut(s)	120, 907
BisI	GCNGC	3 cut(s)	220, 296, 611
BlnI	CCTAGG	1 cut(s)	752
BlsI	GCNGC	3 cut(s)	221, 297, 612
Bme1390I	CCNGG	1 cut(s)	31
Bme18I	GGWCC	1 cut(s)	665
BmeT110I	CYCGRG	1 cut(s)	47
BmgT120I	GGNCC	3 cut(s)	33, 297, 665
BmiI	GGNNCC	1 cut(s)	667
BmrFI	CCNGG	1 cut(s)	31
BmsI	GCATC	2 cut(s)	703, 962
BpiI	GAAGAC	2 cut(s)	92, 692
BpmI	CTGGAG	1 cut(s)	254
BsaI	GGTCTC	1 cut(s)	218
BsaJI	CCNNGG	5 cut(s)	30, 511, 641, 672, 752
BsaXI	ACNNNNNCTCC	2 cut(s)	507, 537
Bsc4I	CCNNNNNNNGG	3 cut(s)	419, 517, 853
Bse21I	CCTNAGG	1 cut(s)	716
BseBI	CCWGG	1 cut(s)	31
BseDI	CCNNGG	5 cut(s)	30, 511, 641, 672, 752
BseLI	CCNNNNNNNGG	3 cut(s)	419, 517, 853
BseMII	CTCAG	1 cut(s)	969
BseRI	GAGGAG	1 cut(s)	528
BseSI	GKGCMC	1 cut(s)	61
BseXI	GCAGC	1 cut(s)	597
Bsh1236I	CGCG	2 cut(s)	131, 170
BshFI	GGCC	3 cut(s)	29, 35, 298
BsiHKAI	GWGCWC	2 cut(s)	48, 951
BsiHKCI	CYCGRG	1 cut(s)	47
BsiSI	CCGG	1 cut(s)	184
BslI	CCNNNNNNNGG	3 cut(s)	419, 517, 853
BsmAI	GTCTC	2 cut(s)	68, 218
BsmBI	CGTCTC	1 cut(s)	68
BsnI	GGCC	3 cut(s)	29, 35, 298
Bso31I	GGTCTC	1 cut(s)	218
BsoBI	CYCGRG	1 cut(s)	47
Bsp1286I	GDGCHC	3 cut(s)	48, 61, 951
Bsp1407I	TGTACA	1 cut(s)	466
Bsp143I	GATC	8 cut(s)	328, 343, 422, 502, 550, 591, 745, 817
Bsp19I	CCATGG	1 cut(s)	672
BspACI	CCGC	5 cut(s)	131, 170, 219, 295, 542
BspANI	GGCC	3 cut(s)	29, 35, 298
BspCNI	CTCAG	1 cut(s)	970
BspFNI	CGCG	2 cut(s)	131, 170
BspLI	GGNNCC	1 cut(s)	667
BspPI	GGATC	2 cut(s)	430, 586
BspTNI	GGTCTC	1 cut(s)	218
BsrGI	TGTACA	1 cut(s)	466
BssECI	CCNNGG	5 cut(s)	30, 511, 641, 672, 752
BssMI	GATC	8 cut(s)	328, 343, 422, 502, 550, 591, 745, 817
BssT1I	CCWWGG	3 cut(s)	641, 672, 752
Bst2UI	CCWGG	1 cut(s)	31
Bst4CI	ACNGT	2 cut(s)	603, 634
Bst6I	CTCTTC	1 cut(s)	34
BstAUI	TGTACA	1 cut(s)	466
BstC8I	GCNNGC	2 cut(s)	57, 951
BstDEI	CTNAG	3 cut(s)	313, 716, 978
BstDSI	CCRYGG	1 cut(s)	672
BstFNI	CGCG	2 cut(s)	131, 170
BstH2I	RGCGCY	2 cut(s)	120, 907
BstHHI	GCGC	4 cut(s)	119, 170, 610, 906
BstKTI	GATC	8 cut(s)	331, 346, 425, 505, 553, 594, 748, 820
BstMAI	GTCTC	2 cut(s)	68, 218
BstMBI	GATC	8 cut(s)	328, 343, 422, 502, 550, 591, 745, 817
BstMWI	GCNNNNNNNGC	3 cut(s)	52, 578, 798
BstNI	CCWGG	1 cut(s)	31
BstNSI	RCATGY	1 cut(s)	419
BstSCI	CCNGG	1 cut(s)	29
BstSLI	GKGCMC	1 cut(s)	61
BstUI	CGCG	2 cut(s)	131, 170
BstV1I	GCAGC	1 cut(s)	597
BstV2I	GAAGAC	2 cut(s)	92, 692
BstXI	CCANNNNNNTGG	1 cut(s)	679
Bsu36I	CCTNAGG	1 cut(s)	716
BsuRI	GGCC	3 cut(s)	29, 35, 298
BtgI	CCRYGG	1 cut(s)	672
BtsI	GCAGTG	1 cut(s)	782
BtsIMutI	CAGTG	2 cut(s)	608, 782
Cac8I	GCNNGC	2 cut(s)	57, 951
CfoI	GCGC	4 cut(s)	119, 170, 610, 906
Cfr13I	GGNCC	3 cut(s)	33, 297, 665
Csp6I	GTAC	1 cut(s)	467
CviAII	CATG	4 cut(s)	379, 416, 673, 730
CviQI	GTAC	1 cut(s)	467
DdeI	CTNAG	3 cut(s)	313, 716, 978
DpnI	GATC	8 cut(s)	330, 345, 424, 504, 552, 593, 747, 819
DpnII	GATC	8 cut(s)	328, 343, 422, 502, 550, 591, 745, 817
DraIII	CACNNNGTG	2 cut(s)	603, 605
Eam1104I	CTCTTC	1 cut(s)	34
EarI	CTCTTC	1 cut(s)	34
Ecl136II	GAGCTC	1 cut(s)	46
Eco130I	CCWWGG	3 cut(s)	641, 672, 752
Eco24I	GRGCYC	1 cut(s)	48
Eco31I	GGTCTC	1 cut(s)	218
Eco47I	GGWCC	1 cut(s)	665
Eco47III	AGCGCT	1 cut(s)	118
Eco53kI	GAGCTC	1 cut(s)	46
Eco81I	CCTNAGG	1 cut(s)	716
Eco88I	CYCGRG	1 cut(s)	47
EcoICRI	GAGCTC	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	29
EcoT14I	CCWWGG	3 cut(s)	641, 672, 752
EcoT38I	GRGCYC	1 cut(s)	48
ErhI	CCWWGG	3 cut(s)	641, 672, 752
Esp3I	CGTCTC	1 cut(s)	68
FaeI	CATG	4 cut(s)	382, 419, 676, 733
FalI	AAGNNNNNCTT	2 cut(s)	483, 515
FatI	CATG	4 cut(s)	378, 415, 672, 729
FauI	CCCGC	1 cut(s)	535
FauNDI	CATATG	1 cut(s)	868
Fnu4HI	GCNGC	3 cut(s)	220, 296, 611
FriOI	GRGCYC	1 cut(s)	48
Fsp4HI	GCNGC	3 cut(s)	220, 296, 611
FspBI	CTAG	1 cut(s)	753
GlaI	GCGC	4 cut(s)	118, 169, 609, 905
GluI	GCNGC	3 cut(s)	220, 296, 611
GsuI	CTGGAG	1 cut(s)	254
HaeII	RGCGCY	2 cut(s)	120, 907
HaeIII	GGCC	3 cut(s)	29, 35, 298
HapII	CCGG	1 cut(s)	184
HhaI	GCGC	4 cut(s)	119, 170, 610, 906
Hin1II	CATG	4 cut(s)	382, 419, 676, 733
Hin6I	GCGC	4 cut(s)	117, 168, 608, 904
HinP1I	GCGC	4 cut(s)	117, 168, 608, 904
HinfI	GANTC	4 cut(s)	9, 383, 863, 974
HpaII	CCGG	1 cut(s)	184
HphI	GGTGA	2 cut(s)	323, 953
Hpy188I	TCNGA	5 cut(s)	142, 252, 512, 822, 979
Hpy188III	TCNNGA	3 cut(s)	49, 73, 815
Hpy99I	CGWCG	1 cut(s)	693
HpyAV	CCTTC	7 cut(s)	19, 154, 446, 481, 751, 817, 961
HpyCH4III	ACNGT	2 cut(s)	603, 634
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	3 cut(s)	261, 581, 775
HpyF10VI	GCNNNNNNNGC	3 cut(s)	52, 578, 798
HpyF3I	CTNAG	3 cut(s)	313, 716, 978
HpySE526I	ACGT	1 cut(s)	198
Hsp92II	CATG	4 cut(s)	382, 419, 676, 733
HspAI	GCGC	4 cut(s)	117, 168, 608, 904
Kzo9I	GATC	8 cut(s)	328, 343, 422, 502, 550, 591, 745, 817
LmnI	GCTCC	1 cut(s)	901
LpnPI	CCDG	9 cut(s)	16, 35, 43, 49, 127, 197, 218, 612, 828
Lsp1109I	GCAGC	1 cut(s)	597
LweI	GCATC	2 cut(s)	703, 962
MaeI	CTAG	1 cut(s)	753
MaeII	ACGT	1 cut(s)	198
MalI	GATC	8 cut(s)	330, 345, 424, 504, 552, 593, 747, 819
MboI	GATC	8 cut(s)	328, 343, 422, 502, 550, 591, 745, 817
MboII	GAAGA	7 cut(s)	51, 94, 97, 169, 199, 692, 983
MhlI	GDGCHC	3 cut(s)	48, 61, 951
MluCI	AATT	3 cut(s)	176, 650, 891
MlyI	GAGTC	1 cut(s)	377
MmeI	TCCRAC	1 cut(s)	643
MroXI	GAANNNNTTC	1 cut(s)	842
MseI	TTAA	2 cut(s)	477, 894
MspI	CCGG	1 cut(s)	184
MspR9I	CCNGG	1 cut(s)	31
MvaI	CCWGG	1 cut(s)	31
MvnI	CGCG	2 cut(s)	131, 170
MwoI	GCNNNNNNNGC	3 cut(s)	52, 578, 798
NcoI	CCATGG	1 cut(s)	672
NdeI	CATATG	1 cut(s)	868
NdeII	GATC	8 cut(s)	328, 343, 422, 502, 550, 591, 745, 817
NlaIII	CATG	4 cut(s)	382, 419, 676, 733
NlaIV	GGNNCC	1 cut(s)	667
NspI	RCATGY	1 cut(s)	419
PaeR7I	CTCGAG	1 cut(s)	47
PciI	ACATGT	1 cut(s)	415
PcsI	WCGNNNNNNNCGW	1 cut(s)	694
PdmI	GAANNNNTTC	1 cut(s)	842
PfeI	GAWTC	3 cut(s)	9, 863, 974
PkrI	GCNGC	3 cut(s)	221, 297, 612
PleI	GAGTC	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	377
PscI	ACATGT	1 cut(s)	415
Psp124BI	GAGCTC	1 cut(s)	48
Psp6I	CCWGG	1 cut(s)	29
PspGI	CCWGG	1 cut(s)	29
PspN4I	GGNNCC	1 cut(s)	667
PspPI	GGNCC	3 cut(s)	33, 297, 665
RsaI	GTAC	1 cut(s)	468
RsaNI	GTAC	1 cut(s)	467
SacI	GAGCTC	1 cut(s)	48
SaqAI	TTAA	2 cut(s)	477, 894
SatI	GCNGC	3 cut(s)	220, 296, 611
Sau3AI	GATC	8 cut(s)	328, 343, 422, 502, 550, 591, 745, 817
Sau96I	GGNCC	3 cut(s)	33, 297, 665
SchI	GAGTC	1 cut(s)	377
ScrFI	CCNGG	1 cut(s)	31
SduI	GDGCHC	3 cut(s)	48, 61, 951
SfaNI	GCATC	2 cut(s)	703, 962
Sfr274I	CTCGAG	1 cut(s)	47
SinI	GGWCC	1 cut(s)	665
SlaI	CTCGAG	1 cut(s)	47
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
Sse9I	AATT	3 cut(s)	176, 650, 891
SsiI	CCGC	5 cut(s)	131, 170, 219, 295, 542
SspI	AATATT	2 cut(s)	769, 811
SspMI	CTAG	1 cut(s)	753
SstI	GAGCTC	1 cut(s)	48
StyD4I	CCNGG	1 cut(s)	29
StyI	CCWWGG	3 cut(s)	641, 672, 752
TaaI	ACNGT	2 cut(s)	603, 634
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	2 cut(s)	48, 72
TasI	AATT	3 cut(s)	176, 650, 891
TatI	WGTACW	1 cut(s)	466
TauI	GCSGC	2 cut(s)	222, 298
TfiI	GAWTC	3 cut(s)	9, 863, 974
Tru1I	TTAA	2 cut(s)	477, 894
Tru9I	TTAA	2 cut(s)	477, 894
TscAI	CASTG	2 cut(s)	608, 789
TseI	GCWGC	1 cut(s)	610
TspDTI	ATGAA	4 cut(s)	381, 424, 855, 935
TspGWI	ACGGA	2 cut(s)	117, 269
TspRI	CASTG	2 cut(s)	608, 789
VpaK11BI	GGWCC	1 cut(s)	665
XapI	RAATTY	1 cut(s)	176
XceI	RCATGY	1 cut(s)	419
XcmI	CCANNNNNNNNNTGG	1 cut(s)	854
XhoI	CTCGAG	1 cut(s)	47
XmaJI	CCTAGG	1 cut(s)	752
XmnI	GAANNNNTTC	1 cut(s)	842
XspI	CTAG	1 cut(s)	753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.