Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0015375

Physical Location & Seq

Genomic Coordinates Reverse (-)

1727765 .. 1730752

Gene Structure 2988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1018000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGTTGCAACCCCAGAAAGGAAGGGCCACAAGAGAGCCAGAGGGTTCGCAGCCAACGTCGTTGCAAGTGAGAACTCCCAAGACTGGAAAGGCCAGAAGAGAGCTAGAGAAACGTGCCCCCAAGATCGTTGAGACCGGGAAGAAGACGTTGATTCTTCACGGTAGGAAGACGAGCAATGTGGTTAACTCTGTGTTATCGGACCTTTACCATTTGAAGAAGGACAGTGCTGTGAAATTCAGCCGCAGGAATGAAGATATTAGCCCTTTTGAAAGTGGGGGTGATACTTCCCTTGAGTTCTTCTCTCATAAAACCGATTGCAGCATTTTCGTCTTTGGCTCTCACTCAAAGAAGCGGCCTGACAATCTTGTCATAGGGAGAACTTATGATCACCATATATATGATCTCATAGAGGTTGGGGTTGAAAACTATAAACCATTGGAATCATTTACATATGACAAGAAACTAGCACCACGTGTGGGCACGAAACCTTTCGTTTGCTTTATTGGAGAAGGATTTGAAAGCGCAGGAGAACTGCAACATTTGAAGGAAGTTTTGCTTGATCTGTTACGAGGAGAGGTTGTAGAGAAATTAAATCTTGCCGGTTTAGACCGTGTATATGTATGTACAGCTATATCTCCTAAGAAAGTGGTTCTTACTCAGTGTGCACTGCGACTGAAAAAATCTGGCACTGTAGTTCCACGGATGGAACTAGTTGAAGTTGGCCCCTCCATGGATTTAGTAGTTCGTCGGCATCGTCTTCCTAATGAAAGCCTAAGGAAAGAAGCAATGAGAGAAGGCAAAAATCAGCCCAAGAAGGACAAGAATATTAAACAGGACCTACTGCGGGGCAAGGTTGGGAAAATCAACATCCCGGATCAAAAGATTGGAGATACGGTGTATTATCACACAAAGGTTGGTGATACATTTGTGCCTAGCAAAACAAAGGGAGTTAAAAGGGAGCGCCGTGAAGCTAGAATGAAACACGAAGGTAACGAGCGTGCACCAAAGGTTCAAGACATGCTTGAGCCCAAGAAAACAAAAAAACTTAAAAGGGAGCGCCGTGATCCTACGACTACTGAGGATGCCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0000463 GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Brix

Protein Analysis

364

Amino Acids

41.28

Weight (kDa)

9.77

Isoelectric Point (pI)

42.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Brix	PF04427	54 - 250	7e-39	Brix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23620
fragaria_vesca	FvH4_6g17900
malus_domestica	MD12G1018000.v1.1 MD14G1016000.v1.1
prunus_persica	Prupe.7G117100_v2.0.a1
pyrus_communis	pycom12g01500 pycom14g01380
rosa_chinensis	RchiOBHm_Chr3g0472151
rosa_laevigata	RLG00000012848 RLG00000024101
rosa_multiflora	Rmu_sc0002532.1_g000027
rosa_roxburghii	Rroxscaffold_6G00409200
rosa_rugosa	Rorug03G0122700
rosa_samantha	Rh3AG174500 Rh3CG191000
rosa_wichuraiana	Rw3G016640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	365
AciI	CCGC	3 cut(s)	241, 352, 844
AclWI	GGATC	2 cut(s)	882, 1058
AcsI	RAATTY	1 cut(s)	233
AcvI	CACGTG	1 cut(s)	473
AdeI	CACNNNGTG	1 cut(s)	473
AfaI	GTAC	1 cut(s)	625
AfiI	CCNNNNNNNGG	5 cut(s)	17, 83, 476, 730, 844
AflIII	ACRYGT	1 cut(s)	472
AgsI	TTSAA	7 cut(s)	214, 269, 422, 518, 544, 716, 1013
AhlI	ACTAGT	1 cut(s)	709
AluBI	AGCT	3 cut(s)	103, 629, 971
AluI	AGCT	3 cut(s)	103, 629, 971
Alw21I	GWGCWC	2 cut(s)	667, 1003
Alw26I	GTCTC	1 cut(s)	125
Alw44I	GTGCAC	2 cut(s)	663, 999
AlwI	GGATC	2 cut(s)	882, 1058
AoxI	GGCC	4 cut(s)	24, 90, 353, 721
ApaLI	GTGCAC	2 cut(s)	663, 999
ApeKI	GCWGC	2 cut(s)	49, 318
ApoI	RAATTY	1 cut(s)	233
Asp700I	GAANNNNTTC	1 cut(s)	488
AspLEI	GCGC	3 cut(s)	524, 963, 1059
AspS9I	GGNCC	4 cut(s)	24, 199, 722, 835
AsuC2I	CCSGG	2 cut(s)	136, 872
AsuHPI	GGTGA	3 cut(s)	290, 380, 929
AvaII	GGWCC	2 cut(s)	199, 835
AxyI	CCTNAGG	1 cut(s)	773
BaeGI	GKGCMC	4 cut(s)	118, 482, 667, 1003
BaeI	ACNNNNGTAYC	2 cut(s)	912, 945
BanII	GRGCYC	1 cut(s)	1029
BbrPI	CACGTG	1 cut(s)	473
BbsI	GAAGAC	3 cut(s)	149, 173, 749
Bbv12I	GWGCWC	2 cut(s)	667, 1003
BbvI	GCAGC	2 cut(s)	61, 330
BccI	CCATC	1 cut(s)	697
BceAI	ACGGC	2 cut(s)	948, 1044
BcgI	CGANNNNNNTGC	2 cut(s)	307, 341
BclI	TGATCA	1 cut(s)	385
BcnI	CCSGG	2 cut(s)	136, 872
BcoDI	GTCTC	1 cut(s)	125
BcuI	ACTAGT	1 cut(s)	709
BfaI	CTAG	5 cut(s)	104, 464, 710, 933, 972
BfmI	CTRYAG	1 cut(s)	690
BfoI	RGCGCY	2 cut(s)	964, 1060
BisI	GCNGC	4 cut(s)	50, 241, 319, 353
BlsI	GCNGC	4 cut(s)	51, 242, 320, 354
Bme1390I	CCNGG	2 cut(s)	136, 872
Bme18I	GGWCC	2 cut(s)	199, 835
BmgT120I	GGNCC	4 cut(s)	24, 199, 722, 835
BmiI	GGNNCC	1 cut(s)	724
BmrFI	CCNGG	2 cut(s)	136, 872
BmsI	GCATC	2 cut(s)	760, 1072
BpiI	GAAGAC	3 cut(s)	149, 173, 749
BplI	GAGNNNNNCTC	2 cut(s)	284, 316
BpuEI	CTTGAG	2 cut(s)	311, 1043
BpuMI	CCSGG	2 cut(s)	136, 872
BsaAI	YACGTR	1 cut(s)	473
BsaI	GGTCTC	1 cut(s)	125
BsaJI	CCNNGG	2 cut(s)	698, 729
BsaXI	ACNNNNNCTCC	4 cut(s)	564, 594, 879, 909
Bsc4I	CCNNNNNNNGG	5 cut(s)	17, 83, 476, 730, 844
Bse118I	RCCGGY	1 cut(s)	599
Bse1I	ACTGG	1 cut(s)	88
Bse21I	CCTNAGG	1 cut(s)	773
Bse3DI	GCAATG	2 cut(s)	181, 792
BseDI	CCNNGG	2 cut(s)	698, 729
BseGI	GGATG	3 cut(s)	708, 867, 1087
BseLI	CCNNNNNNNGG	5 cut(s)	17, 83, 476, 730, 844
BseMI	GCAATG	2 cut(s)	181, 792
BseMII	CTCAG	2 cut(s)	671, 1068
BseNI	ACTGG	1 cut(s)	88
BseRI	GAGGAG	1 cut(s)	585
BseSI	GKGCMC	4 cut(s)	118, 482, 667, 1003
BseXI	GCAGC	2 cut(s)	61, 330
BshFI	GGCC	4 cut(s)	26, 92, 355, 723
BsiHKAI	GWGCWC	2 cut(s)	667, 1003
BsiSI	CCGG	3 cut(s)	135, 600, 872
BslI	CCNNNNNNNGG	5 cut(s)	17, 83, 476, 730, 844
BsmAI	GTCTC	1 cut(s)	125
BsnI	GGCC	4 cut(s)	26, 92, 355, 723
Bso31I	GGTCTC	1 cut(s)	125
Bsp1286I	GDGCHC	5 cut(s)	118, 482, 667, 1003, 1029
Bsp1407I	TGTACA	1 cut(s)	623
Bsp143I	GATC	6 cut(s)	123, 385, 400, 559, 874, 1063
Bsp19I	CCATGG	1 cut(s)	729
BspACI	CCGC	3 cut(s)	241, 352, 844
BspANI	GGCC	4 cut(s)	26, 92, 355, 723
BspCNI	CTCAG	2 cut(s)	670, 1069
BspLI	GGNNCC	1 cut(s)	724
BspPI	GGATC	2 cut(s)	882, 1058
BspTNI	GGTCTC	1 cut(s)	125
BsrDI	GCAATG	2 cut(s)	181, 792
BsrFI	RCCGGY	1 cut(s)	599
BsrGI	TGTACA	1 cut(s)	623
BsrI	ACTGG	1 cut(s)	88
BssAI	RCCGGY	1 cut(s)	599
BssECI	CCNNGG	2 cut(s)	698, 729
BssMI	GATC	6 cut(s)	123, 385, 400, 559, 874, 1063
BssT1I	CCWWGG	1 cut(s)	729
Bst4CI	ACNGT	5 cut(s)	161, 224, 611, 691, 895
Bst6I	CTCTTC	1 cut(s)	91
BstAUI	TGTACA	1 cut(s)	623
BstBAI	YACGTR	1 cut(s)	473
BstC8I	GCNNGC	1 cut(s)	999
BstDEI	CTNAG	4 cut(s)	639, 657, 773, 1077
BstDSI	CCRYGG	2 cut(s)	698, 729
BstF5I	GGATG	3 cut(s)	708, 867, 1087
BstH2I	RGCGCY	2 cut(s)	964, 1060
BstHHI	GCGC	3 cut(s)	524, 963, 1059
BstKTI	GATC	6 cut(s)	126, 388, 403, 562, 877, 1066
BstMAI	GTCTC	1 cut(s)	125
BstMBI	GATC	6 cut(s)	123, 385, 400, 559, 874, 1063
BstNSI	RCATGY	1 cut(s)	1021
BstSCI	CCNGG	2 cut(s)	134, 870
BstSFI	CTRYAG	1 cut(s)	690
BstSLI	GKGCMC	4 cut(s)	118, 482, 667, 1003
BstV1I	GCAGC	2 cut(s)	61, 330
BstV2I	GAAGAC	3 cut(s)	149, 173, 749
Bsu36I	CCTNAGG	1 cut(s)	773
BsuRI	GGCC	4 cut(s)	26, 92, 355, 723
BtgI	CCRYGG	2 cut(s)	698, 729
BtsCI	GGATG	3 cut(s)	708, 867, 1087
BtsI	GCAGTG	1 cut(s)	665
BtsIMutI	CAGTG	4 cut(s)	229, 665, 665, 687
Cac8I	GCNNGC	1 cut(s)	999
CfoI	GCGC	3 cut(s)	524, 963, 1059
Cfr10I	RCCGGY	1 cut(s)	599
Cfr13I	GGNCC	4 cut(s)	24, 199, 722, 835
Csp6I	GTAC	1 cut(s)	624
CviAII	CATG	2 cut(s)	730, 1018
CviQI	GTAC	1 cut(s)	624
DdeI	CTNAG	4 cut(s)	639, 657, 773, 1077
DpnI	GATC	6 cut(s)	125, 387, 402, 561, 876, 1065
DpnII	GATC	6 cut(s)	123, 385, 400, 559, 874, 1063
DraIII	CACNNNGTG	1 cut(s)	473
DrdI	GACNNNNNNGTC	1 cut(s)	365
DseDI	GACNNNNNNGTC	1 cut(s)	365
Eam1104I	CTCTTC	1 cut(s)	91
EarI	CTCTTC	1 cut(s)	91
Eco130I	CCWWGG	1 cut(s)	729
Eco24I	GRGCYC	1 cut(s)	1029
Eco31I	GGTCTC	1 cut(s)	125
Eco47I	GGWCC	2 cut(s)	199, 835
Eco72I	CACGTG	1 cut(s)	473
Eco81I	CCTNAGG	1 cut(s)	773
EcoO109I	RGGNCCY	1 cut(s)	835
EcoT14I	CCWWGG	1 cut(s)	729
EcoT38I	GRGCYC	1 cut(s)	1029
ErhI	CCWWGG	1 cut(s)	729
FaeI	CATG	2 cut(s)	733, 1021
FalI	AAGNNNNNCTT	6 cut(s)	540, 572, 636, 668, 1005, 1037
FatI	CATG	2 cut(s)	729, 1017
FauI	CCCGC	1 cut(s)	837
FauNDI	CATATG	1 cut(s)	451
FbaI	TGATCA	1 cut(s)	385
Fnu4HI	GCNGC	4 cut(s)	50, 241, 319, 353
FokI	GGATG	2 cut(s)	715, 854
FriOI	GRGCYC	1 cut(s)	1029
Fsp4HI	GCNGC	4 cut(s)	50, 241, 319, 353
FspBI	CTAG	5 cut(s)	104, 464, 710, 933, 972
GlaI	GCGC	3 cut(s)	523, 962, 1058
GluI	GCNGC	4 cut(s)	50, 241, 319, 353
HaeII	RGCGCY	2 cut(s)	964, 1060
HaeIII	GGCC	4 cut(s)	26, 92, 355, 723
HapII	CCGG	3 cut(s)	135, 600, 872
HhaI	GCGC	3 cut(s)	524, 963, 1059
Hin1II	CATG	2 cut(s)	733, 1021
Hin6I	GCGC	3 cut(s)	522, 961, 1057
HinP1I	GCGC	3 cut(s)	522, 961, 1057
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	2 cut(s)	151, 440
HpaI	GTTAAC	1 cut(s)	184
HpaII	CCGG	3 cut(s)	135, 600, 872
HphI	GGTGA	3 cut(s)	290, 380, 929
Hpy166II	GTNNAC	3 cut(s)	184, 665, 1001
Hpy188I	TCNGA	1 cut(s)	199
Hpy188III	TCNNGA	1 cut(s)	1013
Hpy8I	GTNNAC	3 cut(s)	184, 665, 1001
Hpy99I	CGWCG	2 cut(s)	61, 750
HpyAV	CCTTC	7 cut(s)	15, 211, 503, 538, 788, 808, 980
HpyCH4III	ACNGT	5 cut(s)	161, 224, 611, 691, 895
HpyCH4IV	ACGT	4 cut(s)	56, 112, 146, 472
HpyCH4V	TGCA	6 cut(s)	7, 64, 318, 535, 665, 1001
HpyF3I	CTNAG	4 cut(s)	639, 657, 773, 1077
HpySE526I	ACGT	4 cut(s)	56, 112, 146, 472
Hsp92II	CATG	2 cut(s)	733, 1021
HspAI	GCGC	3 cut(s)	522, 961, 1057
Ksp22I	TGATCA	1 cut(s)	385
KspAI	GTTAAC	1 cut(s)	184
Kzo9I	GATC	6 cut(s)	123, 385, 400, 559, 874, 1063
LmnI	GCTCC	2 cut(s)	958, 1054
Lsp1109I	GCAGC	2 cut(s)	61, 330
LweI	GCATC	2 cut(s)	760, 1072
MaeI	CTAG	5 cut(s)	104, 464, 710, 933, 972
MaeII	ACGT	4 cut(s)	56, 112, 146, 472
MaeIII	GTNAC	2 cut(s)	564, 989
MalI	GATC	6 cut(s)	125, 387, 402, 561, 876, 1065
MboI	GATC	6 cut(s)	123, 385, 400, 559, 874, 1063
MboII	GAAGA	9 cut(s)	108, 146, 151, 154, 178, 226, 263, 289, 749
MhlI	GDGCHC	5 cut(s)	118, 482, 667, 1003, 1029
MluCI	AATT	2 cut(s)	233, 587
MnlI	CCTC	6 cut(s)	34, 403, 563, 568, 736, 1072
MroXI	GAANNNNTTC	1 cut(s)	488
MseI	TTAA	5 cut(s)	183, 590, 828, 951, 1047
MslI	CAYNNNNRTG	1 cut(s)	396
MspI	CCGG	3 cut(s)	135, 600, 872
MspR9I	CCNGG	2 cut(s)	136, 872
NciI	CCSGG	2 cut(s)	136, 872
NcoI	CCATGG	1 cut(s)	729
NdeI	CATATG	1 cut(s)	451
NdeII	GATC	6 cut(s)	123, 385, 400, 559, 874, 1063
NlaIII	CATG	2 cut(s)	733, 1021
NlaIV	GGNNCC	1 cut(s)	724
NspI	RCATGY	1 cut(s)	1021
PcsI	WCGNNNNNNNCGW	3 cut(s)	53, 751, 990
PdmI	GAANNNNTTC	1 cut(s)	488
PfeI	GAWTC	2 cut(s)	151, 440
PfoI	TCCNGGA	1 cut(s)	870
PkrI	GCNGC	4 cut(s)	51, 242, 320, 354
PmaCI	CACGTG	1 cut(s)	473
PmlI	CACGTG	1 cut(s)	473
Ppu21I	YACGTR	1 cut(s)	473
PpuMI	RGGWCCY	1 cut(s)	835
Psp5II	RGGWCCY	1 cut(s)	835
PspCI	CACGTG	1 cut(s)	473
PspN4I	GGNNCC	1 cut(s)	724
PspPI	GGNCC	4 cut(s)	24, 199, 722, 835
PspPPI	RGGWCCY	1 cut(s)	835
RsaI	GTAC	1 cut(s)	625
RsaNI	GTAC	1 cut(s)	624
RseI	CAYNNNNRTG	1 cut(s)	396
SaqAI	TTAA	5 cut(s)	183, 590, 828, 951, 1047
SatI	GCNGC	4 cut(s)	50, 241, 319, 353
Sau3AI	GATC	6 cut(s)	123, 385, 400, 559, 874, 1063
Sau96I	GGNCC	4 cut(s)	24, 199, 722, 835
ScrFI	CCNGG	2 cut(s)	136, 872
SduI	GDGCHC	5 cut(s)	118, 482, 667, 1003, 1029
SfaNI	GCATC	2 cut(s)	760, 1072
SfcI	CTRYAG	1 cut(s)	690
SinI	GGWCC	2 cut(s)	199, 835
SmiMI	CAYNNNNRTG	1 cut(s)	396
SmlI	CTYRAG	2 cut(s)	290, 1022
SmoI	CTYRAG	2 cut(s)	290, 1022
SpeI	ACTAGT	1 cut(s)	709
Sse9I	AATT	2 cut(s)	233, 587
SsiI	CCGC	3 cut(s)	241, 352, 844
SspI	AATATT	1 cut(s)	826
SspMI	CTAG	5 cut(s)	104, 464, 710, 933, 972
StyD4I	CCNGG	2 cut(s)	134, 870
StyI	CCWWGG	1 cut(s)	729
TaaI	ACNGT	5 cut(s)	161, 224, 611, 691, 895
TaiI	ACGT	4 cut(s)	59, 115, 149, 475
TasI	AATT	2 cut(s)	233, 587
TatI	WGTACW	1 cut(s)	623
TauI	GCSGC	2 cut(s)	243, 355
TfiI	GAWTC	2 cut(s)	151, 440
Tru1I	TTAA	5 cut(s)	183, 590, 828, 951, 1047
Tru9I	TTAA	5 cut(s)	183, 590, 828, 951, 1047
TscAI	CASTG	4 cut(s)	229, 665, 672, 694
TseI	GCWGC	2 cut(s)	49, 318
TspDTI	ATGAA	3 cut(s)	264, 780, 992
TspGWI	ACGGA	1 cut(s)	715
TspRI	CASTG	4 cut(s)	229, 665, 672, 694
VneI	GTGCAC	2 cut(s)	663, 999
VpaK11BI	GGWCC	2 cut(s)	199, 835
XapI	RAATTY	1 cut(s)	233
XceI	RCATGY	1 cut(s)	1021
XmnI	GAANNNNTTC	1 cut(s)	488
XspI	CTAG	5 cut(s)	104, 464, 710, 933, 972

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.