RLG00000012848

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0015375
Physical Location & Seq
Forward (+)
23098199 .. 23099574
1376 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012848

Sequence Viewer

Length: 459 bp
ATGTTGAGAGTGAAAACTACTCAAAAGGCGAGGGCCAAAAGAGAGCTCGAGATACGTACGTGCCCCCAAGCTCATCGAGACCGGGAAGAAGACTCTCTGATACTTCACGGCATGAAAAAAGGATTTGAGAAAGTAGAAGAGCTGAAACATTTGAAGGAGTTTTTGCTTGATCCGTTGCGAGGAGAGTCTGGCACAATAGTTTCAAGGACTGGGGAGTTTTCACTCTCAAACATGATTGCAGAAAGTGGAGACCTTGAGACCTTGCTTTCTGGGTTTCACTCCCAACGTGTTCGATCGGCTCTAGCTCAGCCAATTGCCGTTGCCAGAGAAGAGACAAAGAAGGAGAGCCGCTACCTCCAAAGCCCAAAACCATCCGGGGCCAACTTTTTTCCCGCCAAATTTAGAGAAATAGTTTGCTCCTTTGTCTTGCCAGAGCGACAGCTGGAGCGCAAGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

17.34

Weight (kDa)

9.51

Isoelectric Point (pI)

45.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015375)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23620
fragaria_vesca FvH4_6g17900
malus_domestica MD12G1018000.v1.1 MD14G1016000.v1.1
prunus_persica Prupe.7G117100_v2.0.a1
pyrus_communis pycom12g01500 pycom14g01380
rosa_chinensis RchiOBHm_Chr3g0472151
rosa_laevigata RLG00000012848 RLG00000024101
rosa_multiflora Rmu_sc0002532.1_g000027
rosa_roxburghii Rroxscaffold_6G00409200
rosa_rugosa Rorug03G0122700
rosa_samantha Rh3AG174500 Rh3CG191000
rosa_wichuraiana Rw3G016640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 349, 393
AclWI GGATC 1 cut(s) 164
AcsI RAATTY 1 cut(s) 398
AfaI GTAC 1 cut(s) 58
AfiI CCNNNNNNNGG 1 cut(s) 179
AflIII ACRYGT 1 cut(s) 286
AgsI TTSAA 2 cut(s) 154, 204
AluBI AGCT 5 cut(s) 46, 71, 142, 305, 442
AluI AGCT 5 cut(s) 46, 71, 142, 305, 442
Alw21I GWGCWC 1 cut(s) 48
Alw26I GTCTC 4 cut(s) 72, 243, 251, 326
AlwI GGATC 1 cut(s) 164
Ama87I CYCGRG 1 cut(s) 47
AoxI GGCC 2 cut(s) 33, 378
ApoI RAATTY 1 cut(s) 398
AspLEI GCGC 1 cut(s) 450
AspS9I GGNCC 2 cut(s) 33, 378
AsuC2I CCSGG 2 cut(s) 83, 376
AvaI CYCGRG 1 cut(s) 47
BaeGI GKGCMC 1 cut(s) 65
BaeI ACNNNNGTAYC 2 cut(s) 44, 77
BanII GRGCYC 1 cut(s) 48
BbsI GAAGAC 1 cut(s) 96
Bbv12I GWGCWC 1 cut(s) 48
BccI CCATC 1 cut(s) 379
BceAI ACGGC 2 cut(s) 124, 302
BcnI CCSGG 2 cut(s) 83, 376
BcoDI GTCTC 4 cut(s) 72, 243, 251, 326
BfaI CTAG 1 cut(s) 302
BisI GCNGC 1 cut(s) 349
BlpI GCTNAGC 1 cut(s) 306
BlsI GCNGC 1 cut(s) 350
Bme1390I CCNGG 2 cut(s) 83, 376
BmeT110I CYCGRG 1 cut(s) 47
BmgT120I GGNCC 2 cut(s) 33, 378
BmiI GGNNCC 1 cut(s) 379
BmrFI CCNGG 2 cut(s) 83, 376
BmrI ACTGGG 1 cut(s) 219
BmuI ACTGGG 1 cut(s) 219
BpiI GAAGAC 1 cut(s) 96
Bpu1102I GCTNAGC 1 cut(s) 306
BpuEI CTTGAG 1 cut(s) 275
BpuMI CCSGG 2 cut(s) 83, 376
BsaAI YACGTR 2 cut(s) 56, 60
BsaI GGTCTC 3 cut(s) 72, 243, 251
BsaJI CCNNGG 1 cut(s) 375
Bsc4I CCNNNNNNNGG 1 cut(s) 179
Bse1I ACTGG 1 cut(s) 214
BseDI CCNNGG 1 cut(s) 375
BseGI GGATG 1 cut(s) 371
BseLI CCNNNNNNNGG 1 cut(s) 179
BseMII CTCAG 1 cut(s) 320
BseNI ACTGG 1 cut(s) 214
BseRI GAGGAG 1 cut(s) 195
BseSI GKGCMC 1 cut(s) 65
Bsh1285I CGRYCG 1 cut(s) 296
BshFI GGCC 2 cut(s) 35, 380
BsiEI CGRYCG 1 cut(s) 296
BsiHKAI GWGCWC 1 cut(s) 48
BsiHKCI CYCGRG 1 cut(s) 47
BsiSI CCGG 2 cut(s) 82, 375
BsiWI CGTACG 1 cut(s) 56
BslI CCNNNNNNNGG 1 cut(s) 179
BsmAI GTCTC 4 cut(s) 72, 243, 251, 326
BsnI GGCC 2 cut(s) 35, 380
Bso31I GGTCTC 3 cut(s) 72, 243, 251
BsoBI CYCGRG 1 cut(s) 47
Bsp1286I GDGCHC 2 cut(s) 48, 65
Bsp143I GATC 2 cut(s) 169, 293
Bsp1720I GCTNAGC 1 cut(s) 306
BspACI CCGC 2 cut(s) 349, 393
BspANI GGCC 2 cut(s) 35, 380
BspCNI CTCAG 1 cut(s) 319
BspLI GGNNCC 1 cut(s) 379
BspPI GGATC 1 cut(s) 164
BspQI GCTCTTC 1 cut(s) 132
BspTNI GGTCTC 3 cut(s) 72, 243, 251
BsrI ACTGG 1 cut(s) 214
BssECI CCNNGG 1 cut(s) 375
BssMI GATC 2 cut(s) 169, 293
Bst6I CTCTTC 2 cut(s) 132, 324
BstBAI YACGTR 2 cut(s) 56, 60
BstDEI CTNAG 1 cut(s) 306
BstF5I GGATG 1 cut(s) 371
BstHHI GCGC 1 cut(s) 450
BstKTI GATC 2 cut(s) 172, 296
BstMAI GTCTC 4 cut(s) 72, 243, 251, 326
BstMBI GATC 2 cut(s) 169, 293
BstMCI CGRYCG 1 cut(s) 296
BstSCI CCNGG 2 cut(s) 81, 374
BstSLI GKGCMC 1 cut(s) 65
BstSNI TACGTA 1 cut(s) 56
BstV2I GAAGAC 1 cut(s) 96
BsuRI GGCC 2 cut(s) 35, 380
BtsCI GGATG 1 cut(s) 371
CfoI GCGC 1 cut(s) 450
Cfr13I GGNCC 2 cut(s) 33, 378
Csp6I GTAC 1 cut(s) 57
CviAII CATG 2 cut(s) 112, 232
CviQI GTAC 1 cut(s) 57
DdeI CTNAG 1 cut(s) 306
DpnI GATC 2 cut(s) 171, 295
DpnII GATC 2 cut(s) 169, 293
Eam1104I CTCTTC 2 cut(s) 132, 324
EarI CTCTTC 2 cut(s) 132, 324
Ecl136II GAGCTC 1 cut(s) 46
Eco105I TACGTA 1 cut(s) 56
Eco24I GRGCYC 1 cut(s) 48
Eco31I GGTCTC 3 cut(s) 72, 243, 251
Eco53kI GAGCTC 1 cut(s) 46
Eco88I CYCGRG 1 cut(s) 47
EcoICRI GAGCTC 1 cut(s) 46
EcoT38I GRGCYC 1 cut(s) 48
FaeI CATG 2 cut(s) 115, 235
FaiI YATR 2 cut(s) 113, 233
FatI CATG 2 cut(s) 111, 231
FauI CCCGC 1 cut(s) 400
Fnu4HI GCNGC 1 cut(s) 349
FokI GGATG 1 cut(s) 358
FriOI GRGCYC 1 cut(s) 48
Fsp4HI GCNGC 1 cut(s) 349
FspBI CTAG 1 cut(s) 302
GlaI GCGC 1 cut(s) 449
GluI GCNGC 1 cut(s) 349
HaeIII GGCC 2 cut(s) 35, 380
HapII CCGG 2 cut(s) 82, 375
HhaI GCGC 1 cut(s) 450
Hin1II CATG 2 cut(s) 115, 235
Hin6I GCGC 1 cut(s) 448
HinP1I GCGC 1 cut(s) 448
HinfI GANTC 2 cut(s) 92, 185
HpaII CCGG 2 cut(s) 82, 375
Hpy188I TCNGA 1 cut(s) 99
Hpy188III TCNNGA 2 cut(s) 49, 77
HpyAV CCTTC 2 cut(s) 148, 334
HpyCH4IV ACGT 3 cut(s) 55, 59, 286
HpyCH4V TGCA 1 cut(s) 239
HpyF3I CTNAG 1 cut(s) 306
HpySE526I ACGT 3 cut(s) 55, 59, 286
Hsp92II CATG 2 cut(s) 115, 235
HspAI GCGC 1 cut(s) 448
Kzo9I GATC 2 cut(s) 169, 293
LguI GCTCTTC 1 cut(s) 132
LmnI GCTCC 2 cut(s) 422, 445
LpnPI CCDG 8 cut(s) 95, 174, 195, 255, 337, 388, 428, 444
MaeI CTAG 1 cut(s) 302
MaeII ACGT 3 cut(s) 55, 59, 286
MalI GATC 2 cut(s) 171, 295
MboI GATC 2 cut(s) 169, 293
MboII GAAGA 4 cut(s) 98, 101, 149, 341
MfeI CAATTG 1 cut(s) 312
MhlI GDGCHC 2 cut(s) 48, 65
MluCI AATT 2 cut(s) 312, 398
MlyI GAGTC 2 cut(s) 86, 194
MnlI CCTC 3 cut(s) 24, 173, 365
MspA1I CMGCKG 1 cut(s) 442
MspI CCGG 2 cut(s) 82, 375
MspR9I CCNGG 2 cut(s) 83, 376
MunI CAATTG 1 cut(s) 312
NciI CCSGG 2 cut(s) 83, 376
NdeII GATC 2 cut(s) 169, 293
NlaIII CATG 2 cut(s) 115, 235
NlaIV GGNNCC 1 cut(s) 379
PaeR7I CTCGAG 1 cut(s) 47
PciSI GCTCTTC 1 cut(s) 132
Pfl23II CGTACG 1 cut(s) 56
PkrI GCNGC 1 cut(s) 350
Ple19I CGATCG 1 cut(s) 296
PleI GAGTC 2 cut(s) 86, 193
PpsI GAGTC 2 cut(s) 86, 193
Ppu21I YACGTR 2 cut(s) 56, 60
Psp124BI GAGCTC 1 cut(s) 48
PspLI CGTACG 1 cut(s) 56
PspN4I GGNNCC 1 cut(s) 379
PspPI GGNCC 2 cut(s) 33, 378
PvuI CGATCG 1 cut(s) 296
PvuII CAGCTG 1 cut(s) 442
RsaI GTAC 1 cut(s) 58
RsaNI GTAC 1 cut(s) 57
SacI GAGCTC 1 cut(s) 48
SapI GCTCTTC 1 cut(s) 132
SatI GCNGC 1 cut(s) 349
Sau3AI GATC 2 cut(s) 169, 293
Sau96I GGNCC 2 cut(s) 33, 378
SchI GAGTC 2 cut(s) 86, 194
ScrFI CCNGG 2 cut(s) 83, 376
SduI GDGCHC 2 cut(s) 48, 65
Sfr274I CTCGAG 1 cut(s) 47
SlaI CTCGAG 1 cut(s) 47
SmlI CTYRAG 2 cut(s) 47, 254
SmoI CTYRAG 2 cut(s) 47, 254
SnaBI TACGTA 1 cut(s) 56
Sse9I AATT 2 cut(s) 312, 398
SsiI CCGC 2 cut(s) 349, 393
SspMI CTAG 1 cut(s) 302
SstI GAGCTC 1 cut(s) 48
StyD4I CCNGG 2 cut(s) 81, 374
TaiI ACGT 3 cut(s) 58, 62, 289
TaqI TCGA 3 cut(s) 48, 76, 292
TasI AATT 2 cut(s) 312, 398
TauI GCSGC 1 cut(s) 351
TspDTI ATGAA 1 cut(s) 128
TspGWI ACGGA 1 cut(s) 162
XapI RAATTY 1 cut(s) 398
XhoI CTCGAG 1 cut(s) 47
XspI CTAG 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.