Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0015375

Physical Location & Seq

Genomic Coordinates Reverse (-)

1446130 .. 1449173

Gene Structure 3044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1016000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGTTGCCTGTGAAAACTGCCCAGAAAGGAAAGGCCACAAGAGAGCCAGAGGGTTCGCAGCCAACCTTGTTGCAAGTGAGAACTCCCAAGAGTGGAAAGGCCAGAAGAGAGCTAGAGAAACGTGCCCCCAAGATCGTTGAGACGGGGAAGAAGACGTTGATTCTTCACGGTAGGAAGACGAGCAGTGTGATTAATTCTGTGTTATCGGACCTTTACCATTTGAAGAAGGACAGTGCTGTGAAATTCAGCCGCAGGAATGAAGATATTAGCCCTTTTGAAAGTGGGGGTGATACTTCCCTTGAGTTCTTCTCTCACAAAACCGATTGCAGTATTTTCGTCTTTGGCTCTCACTCAAAGAAGCGGCCTGACAATCTTGTCATAGGGAGAACTTATGATCACCATATATATGATCTTGTAGAGGTTGGGGTTGAAAACTATAAACCATTGGAATCGTTTACATATGACAAGAAACTAGCACCGCGGGTGGGGACGAAACCATTTGTTTGCTTTATTGGAGAAGGATTTGAAAGCGCAGGAGAGCTGCAACATTTGAAGGAAGTTTTGCTTGATCTGTTGCGAGGAGAGGTTGTAGAGAAATTAAATCTTGCTGGTTTAGATCGTGTATATGTATGTACAGCTATATCTTCTAAGAAAGTGGTTCTTACTCAATGTGCACTGCGACTTAAAAAATCTGGCACAGTAGTTCCACGGATGGAGCTAGTTGAAGTTGGCCCCTCCATGGATTTAGTAGTTCGTCGGCATCGCCTTCCTAACGAAAGCCTAAGGAAAGAAGCAATGAGAGAAGGCAAAAATCAGCCTAAGAAGGACAAGAATATTAAACAGGACCTACTGCGGGGCAAGGTTGGGAAAATCAACATCCCAGATCAAAAGATTGGAGATACGGTGTATTATCACACAAAGGTTGGTGATACATTTGTGCCTAGCAAAACGAAGGGAGTTAAAAGGGAGCGACGCGAAGCTAGAATGAAACACGAGGGTAATGAGCGTACACCAAAGGTTCAAGACATGCTAGAGCCCAAGAAAGCAAAAAAACTTAAAAGGGAGCGCCATGATCCTACAACAACCAGGGATGCCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0000463 GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Brix

Protein Analysis

367

Amino Acids

41.5

Weight (kDa)

9.82

Isoelectric Point (pI)

37.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Brix	PF04427	57 - 253	7.5e-39	Brix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23620
fragaria_vesca	FvH4_6g17900
malus_domestica	MD12G1018000.v1.1 MD14G1016000.v1.1
prunus_persica	Prupe.7G117100_v2.0.a1
pyrus_communis	pycom12g01500 pycom14g01380
rosa_chinensis	RchiOBHm_Chr3g0472151
rosa_laevigata	RLG00000012848 RLG00000024101
rosa_multiflora	Rmu_sc0002532.1_g000027
rosa_roxburghii	Rroxscaffold_6G00409200
rosa_rugosa	Rorug03G0122700
rosa_samantha	Rh3AG174500 Rh3CG191000
rosa_wichuraiana	Rw3G016640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	374
AccII	CGCG	2 cut(s)	481, 975
AciI	CCGC	5 cut(s)	250, 361, 479, 481, 853
AclWI	GGATC	1 cut(s)	1067
AcsI	RAATTY	1 cut(s)	242
AfaI	GTAC	2 cut(s)	634, 1009
AfiI	CCNNNNNNNGG	4 cut(s)	92, 485, 739, 853
AgsI	TTSAA	7 cut(s)	223, 278, 431, 527, 553, 725, 1022
AjnI	CCWGG	1 cut(s)	1085
AluBI	AGCT	5 cut(s)	112, 541, 638, 718, 980
AluI	AGCT	5 cut(s)	112, 541, 638, 718, 980
Alw21I	GWGCWC	1 cut(s)	676
Alw26I	GTCTC	1 cut(s)	134
Alw44I	GTGCAC	1 cut(s)	672
AlwI	GGATC	1 cut(s)	1067
AoxI	GGCC	4 cut(s)	33, 99, 362, 730
ApaLI	GTGCAC	1 cut(s)	672
ApeKI	GCWGC	2 cut(s)	58, 541
ApoI	RAATTY	1 cut(s)	242
AseI	ATTAAT	1 cut(s)	192
AspLEI	GCGC	2 cut(s)	533, 1068
AspS9I	GGNCC	3 cut(s)	208, 731, 844
AsuHPI	GGTGA	3 cut(s)	299, 389, 938
AvaII	GGWCC	2 cut(s)	208, 844
AxyI	CCTNAGG	1 cut(s)	782
BaeGI	GKGCMC	2 cut(s)	127, 676
BaeI	ACNNNNGTAYC	2 cut(s)	921, 954
BanII	GRGCYC	1 cut(s)	1038
BauI	CACGAG	1 cut(s)	992
BbsI	GAAGAC	2 cut(s)	158, 182
Bbv12I	GWGCWC	1 cut(s)	676
BbvI	GCAGC	2 cut(s)	70, 528
BccI	CCATC	1 cut(s)	706
BcgI	CGANNNNNNTGC	2 cut(s)	316, 350
BciT130I	CCWGG	1 cut(s)	1087
BclI	TGATCA	1 cut(s)	394
BcoDI	GTCTC	1 cut(s)	134
BfaI	CTAG	6 cut(s)	113, 473, 719, 942, 981, 1031
BfoI	RGCGCY	1 cut(s)	1069
BisI	GCNGC	4 cut(s)	59, 250, 362, 542
BlsI	GCNGC	4 cut(s)	60, 251, 363, 543
Bme1390I	CCNGG	1 cut(s)	1087
Bme18I	GGWCC	2 cut(s)	208, 844
BmgT120I	GGNCC	3 cut(s)	208, 731, 844
BmiI	GGNNCC	1 cut(s)	733
BmrFI	CCNGG	1 cut(s)	1087
BmsI	GCATC	2 cut(s)	769, 1081
BpiI	GAAGAC	2 cut(s)	158, 182
BplI	GAGNNNNNCTC	2 cut(s)	293, 325
BpuEI	CTTGAG	1 cut(s)	320
BsaJI	CCNNGG	4 cut(s)	479, 707, 738, 1086
BsaXI	ACNNNNNCTCC	4 cut(s)	573, 603, 888, 918
Bsc4I	CCNNNNNNNGG	4 cut(s)	92, 485, 739, 853
Bse21I	CCTNAGG	1 cut(s)	782
Bse3DI	GCAATG	1 cut(s)	801
BseBI	CCWGG	1 cut(s)	1087
BseDI	CCNNGG	4 cut(s)	479, 707, 738, 1086
BseGI	GGATG	3 cut(s)	717, 876, 1096
BseLI	CCNNNNNNNGG	4 cut(s)	92, 485, 739, 853
BseMI	GCAATG	1 cut(s)	801
BseRI	GAGGAG	1 cut(s)	594
BseSI	GKGCMC	2 cut(s)	127, 676
BseXI	GCAGC	2 cut(s)	70, 528
Bsh1236I	CGCG	2 cut(s)	481, 975
BshFI	GGCC	4 cut(s)	35, 101, 364, 732
BsiHKAI	GWGCWC	1 cut(s)	676
BslFI	GGGAC	1 cut(s)	502
BslI	CCNNNNNNNGG	4 cut(s)	92, 485, 739, 853
BsmAI	GTCTC	1 cut(s)	134
BsmBI	CGTCTC	1 cut(s)	134
BsmFI	GGGAC	1 cut(s)	502
BsnI	GGCC	4 cut(s)	35, 101, 364, 732
Bsp1286I	GDGCHC	3 cut(s)	127, 676, 1038
Bsp1407I	TGTACA	1 cut(s)	632
Bsp143I	GATC	7 cut(s)	132, 394, 409, 568, 616, 883, 1072
Bsp19I	CCATGG	1 cut(s)	738
BspACI	CCGC	5 cut(s)	250, 361, 479, 481, 853
BspANI	GGCC	4 cut(s)	35, 101, 364, 732
BspFNI	CGCG	2 cut(s)	481, 975
BspLI	GGNNCC	1 cut(s)	733
BspPI	GGATC	1 cut(s)	1067
BsrDI	GCAATG	1 cut(s)	801
BsrGI	TGTACA	1 cut(s)	632
BssECI	CCNNGG	4 cut(s)	479, 707, 738, 1086
BssMI	GATC	7 cut(s)	132, 394, 409, 568, 616, 883, 1072
BssSI	CACGAG	1 cut(s)	992
BssT1I	CCWWGG	1 cut(s)	738
Bst2BI	CACGAG	1 cut(s)	992
Bst2UI	CCWGG	1 cut(s)	1087
Bst4CI	ACNGT	4 cut(s)	170, 233, 700, 904
Bst6I	CTCTTC	1 cut(s)	100
BstAUI	TGTACA	1 cut(s)	632
BstDEI	CTNAG	3 cut(s)	648, 782, 819
BstDSI	CCRYGG	3 cut(s)	479, 707, 738
BstF5I	GGATG	3 cut(s)	717, 876, 1096
BstFNI	CGCG	2 cut(s)	481, 975
BstH2I	RGCGCY	1 cut(s)	1069
BstHHI	GCGC	2 cut(s)	533, 1068
BstKTI	GATC	7 cut(s)	135, 397, 412, 571, 619, 886, 1075
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	7 cut(s)	132, 394, 409, 568, 616, 883, 1072
BstNI	CCWGG	1 cut(s)	1087
BstNSI	RCATGY	1 cut(s)	1030
BstSCI	CCNGG	1 cut(s)	1085
BstSLI	GKGCMC	2 cut(s)	127, 676
BstUI	CGCG	2 cut(s)	481, 975
BstV1I	GCAGC	2 cut(s)	70, 528
BstV2I	GAAGAC	2 cut(s)	158, 182
Bsu36I	CCTNAGG	1 cut(s)	782
BsuRI	GGCC	4 cut(s)	35, 101, 364, 732
BtgI	CCRYGG	3 cut(s)	479, 707, 738
BtgZI	GCGATG	1 cut(s)	746
BtsCI	GGATG	3 cut(s)	717, 876, 1096
BtsI	GCAGTG	2 cut(s)	190, 674
BtsIMutI	CAGTG	3 cut(s)	190, 238, 674
CfoI	GCGC	2 cut(s)	533, 1068
Cfr13I	GGNCC	3 cut(s)	208, 731, 844
Cfr42I	CCGCGG	1 cut(s)	482
CseI	GACGC	1 cut(s)	981
Csp6I	GTAC	2 cut(s)	633, 1008
CviAII	CATG	3 cut(s)	739, 1027, 1070
CviQI	GTAC	2 cut(s)	633, 1008
DdeI	CTNAG	3 cut(s)	648, 782, 819
DpnI	GATC	7 cut(s)	134, 396, 411, 570, 618, 885, 1074
DpnII	GATC	7 cut(s)	132, 394, 409, 568, 616, 883, 1072
DrdI	GACNNNNNNGTC	1 cut(s)	374
DseDI	GACNNNNNNGTC	1 cut(s)	374
Eam1104I	CTCTTC	1 cut(s)	100
EarI	CTCTTC	1 cut(s)	100
Eco130I	CCWWGG	1 cut(s)	738
Eco24I	GRGCYC	1 cut(s)	1038
Eco47I	GGWCC	2 cut(s)	208, 844
Eco81I	CCTNAGG	1 cut(s)	782
EcoO109I	RGGNCCY	1 cut(s)	844
EcoRII	CCWGG	1 cut(s)	1085
EcoT14I	CCWWGG	1 cut(s)	738
EcoT38I	GRGCYC	1 cut(s)	1038
ErhI	CCWWGG	1 cut(s)	738
Esp3I	CGTCTC	1 cut(s)	134
FaeI	CATG	3 cut(s)	742, 1030, 1073
FalI	AAGNNNNNCTT	4 cut(s)	549, 581, 645, 677
FaqI	GGGAC	1 cut(s)	502
FatI	CATG	3 cut(s)	738, 1026, 1069
FauI	CCCGC	2 cut(s)	474, 846
FauNDI	CATATG	1 cut(s)	460
FbaI	TGATCA	1 cut(s)	394
Fnu4HI	GCNGC	4 cut(s)	59, 250, 362, 542
FokI	GGATG	2 cut(s)	724, 863
FriOI	GRGCYC	1 cut(s)	1038
Fsp4HI	GCNGC	4 cut(s)	59, 250, 362, 542
FspBI	CTAG	6 cut(s)	113, 473, 719, 942, 981, 1031
GlaI	GCGC	2 cut(s)	532, 1067
GluI	GCNGC	4 cut(s)	59, 250, 362, 542
HaeII	RGCGCY	1 cut(s)	1069
HaeIII	GGCC	4 cut(s)	35, 101, 364, 732
HgaI	GACGC	1 cut(s)	981
HhaI	GCGC	2 cut(s)	533, 1068
Hin1II	CATG	3 cut(s)	742, 1030, 1073
Hin6I	GCGC	2 cut(s)	531, 1066
HinP1I	GCGC	2 cut(s)	531, 1066
HinfI	GANTC	2 cut(s)	160, 449
HphI	GGTGA	3 cut(s)	299, 389, 938
Hpy166II	GTNNAC	3 cut(s)	456, 674, 1010
Hpy188I	TCNGA	1 cut(s)	208
Hpy188III	TCNNGA	1 cut(s)	1022
Hpy8I	GTNNAC	3 cut(s)	456, 674, 1010
Hpy99I	CGWCG	2 cut(s)	759, 975
HpyAV	CCTTC	7 cut(s)	220, 512, 547, 776, 797, 817, 946
HpyCH4III	ACNGT	4 cut(s)	170, 233, 700, 904
HpyCH4IV	ACGT	2 cut(s)	121, 155
HpyCH4V	TGCA	4 cut(s)	73, 327, 544, 674
HpyF3I	CTNAG	3 cut(s)	648, 782, 819
HpySE526I	ACGT	2 cut(s)	121, 155
Hsp92II	CATG	3 cut(s)	742, 1030, 1073
HspAI	GCGC	2 cut(s)	531, 1066
Ksp22I	TGATCA	1 cut(s)	394
KspI	CCGCGG	1 cut(s)	482
Kzo9I	GATC	7 cut(s)	132, 394, 409, 568, 616, 883, 1072
LmnI	GCTCC	3 cut(s)	715, 967, 1063
Lsp1109I	GCAGC	2 cut(s)	70, 528
LweI	GCATC	2 cut(s)	769, 1081
MaeI	CTAG	6 cut(s)	113, 473, 719, 942, 981, 1031
MaeII	ACGT	2 cut(s)	121, 155
MalI	GATC	7 cut(s)	134, 396, 411, 570, 618, 885, 1074
MboI	GATC	7 cut(s)	132, 394, 409, 568, 616, 883, 1072
MboII	GAAGA	9 cut(s)	117, 155, 160, 163, 187, 235, 272, 298, 636
MhlI	GDGCHC	3 cut(s)	127, 676, 1038
MluCI	AATT	3 cut(s)	193, 242, 596
MnlI	CCTC	6 cut(s)	43, 412, 572, 577, 745, 988
MseI	TTAA	6 cut(s)	192, 599, 684, 837, 960, 1056
MslI	CAYNNNNRTG	1 cut(s)	405
MspA1I	CMGCKG	1 cut(s)	481
MspR9I	CCNGG	1 cut(s)	1087
MvaI	CCWGG	1 cut(s)	1087
MvnI	CGCG	2 cut(s)	481, 975
NcoI	CCATGG	1 cut(s)	738
NdeI	CATATG	1 cut(s)	460
NdeII	GATC	7 cut(s)	132, 394, 409, 568, 616, 883, 1072
NlaIII	CATG	3 cut(s)	742, 1030, 1073
NlaIV	GGNNCC	1 cut(s)	733
NspI	RCATGY	1 cut(s)	1030
PfeI	GAWTC	2 cut(s)	160, 449
PkrI	GCNGC	4 cut(s)	60, 251, 363, 543
PpuMI	RGGWCCY	1 cut(s)	844
PshBI	ATTAAT	1 cut(s)	192
Psp5II	RGGWCCY	1 cut(s)	844
Psp6I	CCWGG	1 cut(s)	1085
PspGI	CCWGG	1 cut(s)	1085
PspN4I	GGNNCC	1 cut(s)	733
PspPI	GGNCC	3 cut(s)	208, 731, 844
PspPPI	RGGWCCY	1 cut(s)	844
RsaI	GTAC	2 cut(s)	634, 1009
RsaNI	GTAC	2 cut(s)	633, 1008
RseI	CAYNNNNRTG	1 cut(s)	405
SacII	CCGCGG	1 cut(s)	482
SaqAI	TTAA	6 cut(s)	192, 599, 684, 837, 960, 1056
SatI	GCNGC	4 cut(s)	59, 250, 362, 542
Sau3AI	GATC	7 cut(s)	132, 394, 409, 568, 616, 883, 1072
Sau96I	GGNCC	3 cut(s)	208, 731, 844
ScrFI	CCNGG	1 cut(s)	1087
SduI	GDGCHC	3 cut(s)	127, 676, 1038
SfaNI	GCATC	2 cut(s)	769, 1081
Sfr303I	CCGCGG	1 cut(s)	482
SgrBI	CCGCGG	1 cut(s)	482
SinI	GGWCC	2 cut(s)	208, 844
SmiMI	CAYNNNNRTG	1 cut(s)	405
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
Sse9I	AATT	3 cut(s)	193, 242, 596
SsiI	CCGC	5 cut(s)	250, 361, 479, 481, 853
SspI	AATATT	1 cut(s)	835
SspMI	CTAG	6 cut(s)	113, 473, 719, 942, 981, 1031
StyD4I	CCNGG	1 cut(s)	1085
StyI	CCWWGG	1 cut(s)	738
TaaI	ACNGT	4 cut(s)	170, 233, 700, 904
TaiI	ACGT	2 cut(s)	124, 158
TasI	AATT	3 cut(s)	193, 242, 596
TatI	WGTACW	1 cut(s)	632
TauI	GCSGC	2 cut(s)	252, 364
TfiI	GAWTC	2 cut(s)	160, 449
Tru1I	TTAA	6 cut(s)	192, 599, 684, 837, 960, 1056
Tru9I	TTAA	6 cut(s)	192, 599, 684, 837, 960, 1056
TscAI	CASTG	3 cut(s)	190, 238, 681
TseI	GCWGC	2 cut(s)	58, 541
TspDTI	ATGAA	2 cut(s)	273, 1001
TspGWI	ACGGA	1 cut(s)	724
TspRI	CASTG	3 cut(s)	190, 238, 681
VneI	GTGCAC	1 cut(s)	672
VpaK11BI	GGWCC	2 cut(s)	208, 844
VspI	ATTAAT	1 cut(s)	192
XapI	RAATTY	1 cut(s)	242
XceI	RCATGY	1 cut(s)	1030
XspI	CTAG	6 cut(s)	113, 473, 719, 942, 981, 1031

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.