Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0015375

Physical Location & Seq

Genomic Coordinates Forward (+)

14201316 .. 14204478

Gene Structure 3163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G117100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGTTGACAGTGAAAACTCCACAGAAAGGAAAGGCCAGAAGGGAGCTAGAGAAACGCGCCCCAAAGATCGTTGAGACCGGGAAGAAGACGCTGATACTTCACGGCAGAAAGACGAGCAATGTGGTGAATTCGGTATTGTCTGACCTTTATCATTTGAAGAAGGACAGTGCTGTGAAATTCAGCCGCAGAAATGAGGATATTAGCCCTTTTGAAAGTGGCGGTGAAACTTCCCTCGAGTTCTTTTCTCAAAAAACCGATTGCAGCATTTTCGTTTTTGGTTCTCACTCAAAGAAACGGCCTGACAATCTTGTAATAGGGAGAACTTATGATCACCATATATATGATCTTGTGGAGGTTGGGGTTGAAAATTATAAACGCATGGAATCATTTACATATGACAAGAAACTAGCACCACGTGTGGGGTCGAAACCTTTCATTTGCTTTATAGGAGAAGGATTTGAGAACGCAGGAGAGCTGAAACATTTGAAGGAAGTTTTGCTTGATCTGTTGCGAGGAGAGGTTGTAGAGAAATTAAATCTTGCTGGTTTAGATCGTGTATATGTATGTACAGCTATATCTTCAAACAAAGTGGTCCTTACTCTTTGTGCGCTGCGACTGAAAAAGTCTGGTACAGTAGTTCCAAGAATGGAACTTGTTGAAGTTGGCCCGTCCATGGATTTAGTAGTTCGTCGGCATCGTCTTCCTAATGAAAGCCTAAGGAAAGAAGCAATGAGAGAAGCCAAAAATCAGCCTAGGAAGGACAAAAATATTAAACAGGACACACTGCGTGGCAAGGTTGGGAAAATCAACATCCCGAACCAAAAGATTGGAGACACGGTGTATTATCACACAAAGGTTGGAGACACATTTGTGCCTAGCAAAACCAAGGGAGTTAAAAGGGAGCGCCGTGAGGCTAGAATGAAACACGAGAGTAATGAGCGTGCACCAAAATTTCAAGACATGCTTATGCCTAAGAAATCTAAAAAAGCTAAAAGGGAACGCCGTGAAGCTGGAACGAGTGAGGAGGGTAATGAGCATGCATCGAAAAGGCAGGAGGAGGGTGCTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0000463 GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Brix

Protein Analysis

357

Amino Acids

40.57

Weight (kDa)

9.81

Isoelectric Point (pI)

42.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23620
fragaria_vesca	FvH4_6g17900
malus_domestica	MD12G1018000.v1.1 MD14G1016000.v1.1
prunus_persica	Prupe.7G117100_v2.0.a1
pyrus_communis	pycom12g01500 pycom14g01380
rosa_chinensis	RchiOBHm_Chr3g0472151
rosa_laevigata	RLG00000012848 RLG00000024101
rosa_multiflora	Rmu_sc0002532.1_g000027
rosa_roxburghii	Rroxscaffold_6G00409200
rosa_rugosa	Rorug03G0122700
rosa_samantha	Rh3AG174500 Rh3CG191000
rosa_wichuraiana	Rw3G016640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	372
AccII	CGCG	1 cut(s)	57
AciI	CCGC	2 cut(s)	184, 219
AcsI	RAATTY	3 cut(s)	127, 176, 950
AcvI	CACGTG	1 cut(s)	416
AdeI	CACNNNGTG	2 cut(s)	416, 788
AfaI	GTAC	2 cut(s)	568, 631
AfiI	CCNNNNNNNGG	3 cut(s)	26, 419, 673
AflIII	ACRYGT	1 cut(s)	415
AgsI	TTSAA	7 cut(s)	157, 212, 365, 487, 582, 659, 956
AleI	CACNNNNGTG	1 cut(s)	869
AluBI	AGCT	5 cut(s)	46, 475, 572, 989, 1010
AluI	AGCT	5 cut(s)	46, 475, 572, 989, 1010
Alw21I	GWGCWC	1 cut(s)	946
Alw26I	GTCTC	3 cut(s)	68, 825, 855
Alw44I	GTGCAC	1 cut(s)	942
Ama87I	CYCGRG	1 cut(s)	233
AoxI	GGCC	3 cut(s)	33, 296, 664
ApaLI	GTGCAC	1 cut(s)	942
ApeKI	GCWGC	2 cut(s)	261, 610
ApoI	RAATTY	3 cut(s)	127, 176, 950
Asp700I	GAANNNNTTC	1 cut(s)	431
AspA2I	CCTAGG	1 cut(s)	752
AspLEI	GCGC	3 cut(s)	59, 610, 906
AspS9I	GGNCC	2 cut(s)	592, 665
AsuC2I	CCSGG	1 cut(s)	79
AsuHPI	GGTGA	3 cut(s)	136, 233, 323
AvaI	CYCGRG	1 cut(s)	233
AvaII	GGWCC	1 cut(s)	592
AvrII	CCTAGG	1 cut(s)	752
AxyI	CCTNAGG	1 cut(s)	716
BaeGI	GKGCMC	1 cut(s)	946
BaeI	ACNNNNGTAYC	2 cut(s)	621, 654
BauI	CACGAG	1 cut(s)	926
BbrPI	CACGTG	1 cut(s)	416
BbsI	GAAGAC	2 cut(s)	92, 692
Bbv12I	GWGCWC	1 cut(s)	946
BbvI	GCAGC	2 cut(s)	273, 597
BceAI	ACGGC	4 cut(s)	118, 311, 891, 987
BcgI	CGANNNNNNTGC	2 cut(s)	250, 284
BclI	TGATCA	1 cut(s)	328
BcnI	CCSGG	1 cut(s)	79
BcoDI	GTCTC	3 cut(s)	68, 825, 855
BfaI	CTAG	5 cut(s)	47, 407, 753, 876, 915
BfoI	RGCGCY	1 cut(s)	907
BisI	GCNGC	3 cut(s)	184, 262, 611
BlnI	CCTAGG	1 cut(s)	752
BlsI	GCNGC	3 cut(s)	185, 263, 612
Bme1390I	CCNGG	1 cut(s)	79
Bme18I	GGWCC	1 cut(s)	592
BmeT110I	CYCGRG	1 cut(s)	233
BmgT120I	GGNCC	2 cut(s)	592, 665
BmrFI	CCNGG	1 cut(s)	79
BmsI	GCATC	2 cut(s)	703, 1049
BpiI	GAAGAC	2 cut(s)	92, 692
BpuMI	CCSGG	1 cut(s)	79
BsaAI	YACGTR	1 cut(s)	416
BsaI	GGTCTC	1 cut(s)	68
BsaJI	CCNNGG	3 cut(s)	672, 752, 885
BsaXI	ACNNNNNCTCC	4 cut(s)	507, 537, 822, 852
Bsc4I	CCNNNNNNNGG	3 cut(s)	26, 419, 673
Bse21I	CCTNAGG	1 cut(s)	716
Bse3DI	GCAATG	2 cut(s)	124, 735
BseDI	CCNNGG	3 cut(s)	672, 752, 885
BseGI	GGATG	1 cut(s)	810
BseLI	CCNNNNNNNGG	3 cut(s)	26, 419, 673
BseMI	GCAATG	2 cut(s)	124, 735
BseMII	CTCAG	1 cut(s)	1056
BseRI	GAGGAG	3 cut(s)	528, 1037, 1070
BseSI	GKGCMC	1 cut(s)	946
BseXI	GCAGC	2 cut(s)	273, 597
Bsh1236I	CGCG	1 cut(s)	57
BshFI	GGCC	3 cut(s)	35, 298, 666
BsiHKAI	GWGCWC	1 cut(s)	946
BsiHKCI	CYCGRG	1 cut(s)	233
BsiSI	CCGG	1 cut(s)	78
BslI	CCNNNNNNNGG	3 cut(s)	26, 419, 673
BsmAI	GTCTC	3 cut(s)	68, 825, 855
BsnI	GGCC	3 cut(s)	35, 298, 666
Bso31I	GGTCTC	1 cut(s)	68
BsoBI	CYCGRG	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	946
Bsp1407I	TGTACA	1 cut(s)	566
Bsp143I	GATC	5 cut(s)	66, 328, 343, 502, 550
Bsp19I	CCATGG	1 cut(s)	672
BspACI	CCGC	2 cut(s)	184, 219
BspANI	GGCC	3 cut(s)	35, 298, 666
BspCNI	CTCAG	1 cut(s)	1057
BspFNI	CGCG	1 cut(s)	57
BspTNI	GGTCTC	1 cut(s)	68
BsrDI	GCAATG	2 cut(s)	124, 735
BsrGI	TGTACA	1 cut(s)	566
BssECI	CCNNGG	3 cut(s)	672, 752, 885
BssMI	GATC	5 cut(s)	66, 328, 343, 502, 550
BssSI	CACGAG	1 cut(s)	926
BssT1I	CCWWGG	3 cut(s)	672, 752, 885
Bst2BI	CACGAG	1 cut(s)	926
Bst4CI	ACNGT	4 cut(s)	10, 167, 634, 838
BstAUI	TGTACA	1 cut(s)	566
BstBAI	YACGTR	1 cut(s)	416
BstC8I	GCNNGC	2 cut(s)	942, 1038
BstDEI	CTNAG	3 cut(s)	716, 972, 1065
BstDSI	CCRYGG	1 cut(s)	672
BstF5I	GGATG	1 cut(s)	810
BstFNI	CGCG	1 cut(s)	57
BstH2I	RGCGCY	1 cut(s)	907
BstHHI	GCGC	3 cut(s)	59, 610, 906
BstKTI	GATC	5 cut(s)	69, 331, 346, 505, 553
BstMAI	GTCTC	3 cut(s)	68, 825, 855
BstMBI	GATC	5 cut(s)	66, 328, 343, 502, 550
BstNSI	RCATGY	2 cut(s)	964, 1040
BstSCI	CCNGG	1 cut(s)	77
BstSLI	GKGCMC	1 cut(s)	946
BstUI	CGCG	1 cut(s)	57
BstV1I	GCAGC	2 cut(s)	273, 597
BstV2I	GAAGAC	2 cut(s)	92, 692
BstXI	CCANNNNNNTGG	1 cut(s)	827
Bsu36I	CCTNAGG	1 cut(s)	716
BsuRI	GGCC	3 cut(s)	35, 298, 666
BtgI	CCRYGG	1 cut(s)	672
BtsCI	GGATG	1 cut(s)	810
BtsI	GCAGTG	1 cut(s)	782
BtsIMutI	CAGTG	3 cut(s)	15, 172, 782
Cac8I	GCNNGC	2 cut(s)	942, 1038
CfoI	GCGC	3 cut(s)	59, 610, 906
Cfr13I	GGNCC	2 cut(s)	592, 665
CseI	GACGC	1 cut(s)	97
Csp6I	GTAC	2 cut(s)	567, 630
CspCI	CAANNNNNGTGG	2 cut(s)	570, 605
CviAII	CATG	4 cut(s)	379, 673, 961, 1037
CviQI	GTAC	2 cut(s)	567, 630
DdeI	CTNAG	3 cut(s)	716, 972, 1065
DpnI	GATC	5 cut(s)	68, 330, 345, 504, 552
DpnII	GATC	5 cut(s)	66, 328, 343, 502, 550
DraIII	CACNNNGTG	2 cut(s)	416, 788
Eco130I	CCWWGG	3 cut(s)	672, 752, 885
Eco31I	GGTCTC	1 cut(s)	68
Eco47I	GGWCC	1 cut(s)	592
Eco72I	CACGTG	1 cut(s)	416
Eco81I	CCTNAGG	1 cut(s)	716
Eco88I	CYCGRG	1 cut(s)	233
EcoRI	GAATTC	1 cut(s)	127
EcoT14I	CCWWGG	3 cut(s)	672, 752, 885
EcoT22I	ATGCAT	1 cut(s)	1042
ErhI	CCWWGG	3 cut(s)	672, 752, 885
FaeI	CATG	4 cut(s)	382, 676, 964, 1040
FalI	AAGNNNNNCTT	6 cut(s)	483, 515, 579, 611, 948, 980
FatI	CATG	4 cut(s)	378, 672, 960, 1036
FauNDI	CATATG	1 cut(s)	394
FbaI	TGATCA	1 cut(s)	328
Fnu4HI	GCNGC	3 cut(s)	184, 262, 611
FokI	GGATG	1 cut(s)	797
Fsp4HI	GCNGC	3 cut(s)	184, 262, 611
FspBI	CTAG	5 cut(s)	47, 407, 753, 876, 915
GlaI	GCGC	3 cut(s)	58, 609, 905
GluI	GCNGC	3 cut(s)	184, 262, 611
HaeII	RGCGCY	1 cut(s)	907
HaeIII	GGCC	3 cut(s)	35, 298, 666
HapII	CCGG	1 cut(s)	78
HgaI	GACGC	1 cut(s)	97
HhaI	GCGC	3 cut(s)	59, 610, 906
Hin1II	CATG	4 cut(s)	382, 676, 964, 1040
Hin6I	GCGC	3 cut(s)	57, 608, 904
HinP1I	GCGC	3 cut(s)	57, 608, 904
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	1 cut(s)	383
HpaII	CCGG	1 cut(s)	78
HphI	GGTGA	3 cut(s)	136, 233, 323
Hpy166II	GTNNAC	2 cut(s)	6, 944
Hpy188I	TCNGA	1 cut(s)	142
Hpy188III	TCNNGA	2 cut(s)	814, 956
Hpy8I	GTNNAC	2 cut(s)	6, 944
Hpy99I	CGWCG	1 cut(s)	693
HpyAV	CCTTC	5 cut(s)	33, 154, 446, 481, 751
HpyCH4III	ACNGT	4 cut(s)	10, 167, 634, 838
HpyCH4IV	ACGT	1 cut(s)	415
HpyCH4V	TGCA	3 cut(s)	261, 944, 1040
HpyF3I	CTNAG	3 cut(s)	716, 972, 1065
HpySE526I	ACGT	1 cut(s)	415
Hsp92II	CATG	4 cut(s)	382, 676, 964, 1040
HspAI	GCGC	3 cut(s)	57, 608, 904
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	5 cut(s)	66, 328, 343, 502, 550
LmnI	GCTCC	2 cut(s)	43, 901
LpnPI	CCDG	9 cut(s)	49, 91, 312, 453, 528, 612, 761, 996, 1037
Lsp1109I	GCAGC	2 cut(s)	273, 597
LweI	GCATC	2 cut(s)	703, 1049
MaeI	CTAG	5 cut(s)	47, 407, 753, 876, 915
MaeII	ACGT	1 cut(s)	415
MalI	GATC	5 cut(s)	68, 330, 345, 504, 552
MboI	GATC	5 cut(s)	66, 328, 343, 502, 550
MboII	GAAGA	5 cut(s)	94, 97, 169, 570, 692
MhlI	GDGCHC	1 cut(s)	946
MluCI	AATT	5 cut(s)	127, 176, 367, 530, 950
MmeI	TCCRAC	1 cut(s)	838
Mph1103I	ATGCAT	1 cut(s)	1042
MroXI	GAANNNNTTC	1 cut(s)	431
MseI	TTAA	3 cut(s)	533, 771, 894
MslI	CAYNNNNRTG	3 cut(s)	339, 869, 965
MspI	CCGG	1 cut(s)	78
MspR9I	CCNGG	1 cut(s)	79
MvnI	CGCG	1 cut(s)	57
NciI	CCSGG	1 cut(s)	79
NcoI	CCATGG	1 cut(s)	672
NdeI	CATATG	1 cut(s)	394
NdeII	GATC	5 cut(s)	66, 328, 343, 502, 550
NlaIII	CATG	4 cut(s)	382, 676, 964, 1040
NsiI	ATGCAT	1 cut(s)	1042
NspI	RCATGY	2 cut(s)	964, 1040
OliI	CACNNNNGTG	1 cut(s)	869
PaeI	GCATGC	1 cut(s)	1040
PaeR7I	CTCGAG	1 cut(s)	233
PcsI	WCGNNNNNNNCGW	1 cut(s)	694
PdmI	GAANNNNTTC	1 cut(s)	431
PfeI	GAWTC	1 cut(s)	383
PkrI	GCNGC	3 cut(s)	185, 263, 612
PmaCI	CACGTG	1 cut(s)	416
PmlI	CACGTG	1 cut(s)	416
Ppu21I	YACGTR	1 cut(s)	416
PsiI	TTATAA	1 cut(s)	372
PspCI	CACGTG	1 cut(s)	416
PspPI	GGNCC	2 cut(s)	592, 665
PspXI	VCTCGAGB	1 cut(s)	233
RsaI	GTAC	2 cut(s)	568, 631
RsaNI	GTAC	2 cut(s)	567, 630
RseI	CAYNNNNRTG	3 cut(s)	339, 869, 965
SaqAI	TTAA	3 cut(s)	533, 771, 894
SatI	GCNGC	3 cut(s)	184, 262, 611
Sau3AI	GATC	5 cut(s)	66, 328, 343, 502, 550
Sau96I	GGNCC	2 cut(s)	592, 665
ScrFI	CCNGG	1 cut(s)	79
SduI	GDGCHC	1 cut(s)	946
SfaNI	GCATC	2 cut(s)	703, 1049
Sfr274I	CTCGAG	1 cut(s)	233
SinI	GGWCC	1 cut(s)	592
SlaI	CTCGAG	1 cut(s)	233
SmiMI	CAYNNNNRTG	3 cut(s)	339, 869, 965
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
SphI	GCATGC	1 cut(s)	1040
Sse9I	AATT	5 cut(s)	127, 176, 367, 530, 950
SsiI	CCGC	2 cut(s)	184, 219
SspI	AATATT	1 cut(s)	769
SspMI	CTAG	5 cut(s)	47, 407, 753, 876, 915
StyD4I	CCNGG	1 cut(s)	77
StyI	CCWWGG	3 cut(s)	672, 752, 885
TaaI	ACNGT	4 cut(s)	10, 167, 634, 838
TaiI	ACGT	1 cut(s)	418
TaqI	TCGA	3 cut(s)	234, 425, 1043
TasI	AATT	5 cut(s)	127, 176, 367, 530, 950
TatI	WGTACW	1 cut(s)	566
TauI	GCSGC	1 cut(s)	186
TfiI	GAWTC	1 cut(s)	383
Tru1I	TTAA	3 cut(s)	533, 771, 894
Tru9I	TTAA	3 cut(s)	533, 771, 894
TscAI	CASTG	3 cut(s)	15, 172, 789
TseI	GCWGC	2 cut(s)	261, 610
TspDTI	ATGAA	3 cut(s)	424, 723, 935
TspRI	CASTG	3 cut(s)	15, 172, 789
VneI	GTGCAC	1 cut(s)	942
VpaK11BI	GGWCC	1 cut(s)	592
XapI	RAATTY	3 cut(s)	127, 176, 950
XceI	RCATGY	2 cut(s)	964, 1040
XhoI	CTCGAG	1 cut(s)	233
XmaJI	CCTAGG	1 cut(s)	752
XmnI	GAANNNNTTC	1 cut(s)	431
XspI	CTAG	5 cut(s)	47, 407, 753, 876, 915
Zsp2I	ATGCAT	1 cut(s)	1042

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.