AT3G23770

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
8565494 .. 8567496
2003 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G23770.1

Sequence Viewer

Length: 1431 bp
ATGACTCCTTTTGCTCTGTTCCTCTTCACTCTCCTTGCCCTTTCAAGTTCATGTTGCTCTGCCATTGGTCCACAAAACAACAGAACAGTGTTAGCACTTGCAAGCAGAATTGGGATCAACTATGGAAAATTAGGCAACAATCTTCCTTTTCCTTACCAATCAATCAACCTCATCAAAACCATTAAAGCAGGCCACGTCAAGCTCTATGACGCCGATCCAGAAACCCTAAAGCTCCTCTCTACGACCAATCTTTACGTCACCATCATGGTCCCTAACAACCAGATCATCTCAATAGGTGCTGATCAAGCCGCTGCTGATAACTGGGTCGCCACTAATGTCCTTCCTTTTCACCCGCAAACCCGAATCCGATTCGTCCTCGTTGGCAACGAGGTCCTCAGCTACAGTTCTGATCAAGACAAGCAAATATGGGCTAATCTTGTCCCTGCCATGCGTAAAGTAGTGAACTCTCTTAGAGCTCGTGGAATTCACAACATCAAAGTTGGGACACCTCTTGCCATGGACGCTCTTCGTTCGAGTTTTCCTCCTTCGAGTGGTACATTCCGGGAAGATATCGCTGTTCCGGTGATGTTACCGTTGTTGAAGTTTCTCAATGGAACAAACTCTTTCTTCTTCCTTGATGTTTACCCTTACTTCCCTTGGTCTACTGATCCGGTTAATAACCATTTGGATTTTGCTCTGTTTGAATCGAATTCTACTTATACCGATCCTCAAACCGGTTTGGTTTACACCAATCTTCTAGACCAGATGCTCGATTCGGTTATCTTTGCGATGACCAAGCTCGGTTATCCGAATATCAGTCTCGCAATCTCTGAAACCGGGTGGCCTAATGACGGTGATATCCATGAAACCGGAGCTAATATTGTCAATGCCGCGACGTATAACCGGAATTTGATCAAGAAGATGACTGCTAACCCGCCACTCGGTACACCAGCTAGGCGCGGTGCACCTATACCGACGTTTTTGTTCTCTTTGTTCAATGAAAACCAGAAACCCGGTTCGGGAACAGAGAGACATTGGGGAATTTTGAACCCTGACGGTACACCGATCTACGACATCGATTTCAGCGGTAGAAGATCGTTTTCTGGTTTTGATTCGTTGCCTAAACCGAGTAACAATGTTCCGTTTAAAGGTAATGTATGGTGTGTGGCGGTTGATGGGGCCGATGAGGCAGAGCTAGGGCAGGCGCTTAACTTTGCTTGCGGAAGAAGCAATGCAACATGTGCAGCGTTGGCTCCAGGAGGAGAATGCTATGCACCGGTGACGGTTACTTGGCATGCAAGCTATGCGTTTAGCTCGTACTGGGCTCAGTTCCGGAACCAAAGCTCTCAATGCTACTTCAATGGTTTGGCTCGTGAGACCACGACCAACCCTGGAAATGAGCGTTGCAAGTTTCCTAGCGTTACATTGTGA

Protein Analysis

476

Amino Acids

52.17

Weight (kDa)

7.03

Isoelectric Point (pI)

33.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 37 - 361 2.6e-111 Glycosyl hydrolases family 17
X8 PF07983 387 - 457 1.8e-18 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013919)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23770 AT4G14080
fragaria_vesca FvH4_4g13120
malus_domestica MD04G1019000.v1.1
prunus_persica Prupe.1G168300_v2.0.a1
pyrus_communis pycom04g01520
rosa_chinensis RchiOBHm_Chr4g0412901
rosa_laevigata RLG00000008249
rosa_multiflora Rmu_sc0005621.1_g000022 Rmu_sc0012279.1_g000004
rosa_roxburghii Rroxscaffold_5G00357140
rosa_rugosa Rorug04G0117400
rosa_samantha Rh4AG176300 Rh4BG176700 Rh4CG187300 Rh4DG173600
rosa_wichuraiana Rw4G014800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 662
AccII CGCG 2 cut(s) 893, 960
AccIII TCCGGA 1 cut(s) 1332
AciI CCGC 8 cut(s) 309, 353, 891, 935, 960, 1086, 1169, 1221
AclWI GGATC 4 cut(s) 122, 209, 662, 719
AcsI RAATTY 4 cut(s) 483, 709, 907, 1041
AcyI GRCGYC 1 cut(s) 210
AfaI GTAC 4 cut(s) 556, 946, 1060, 1319
AfiI CCNNNNNNNGG 6 cut(s) 551, 734, 851, 941, 1019, 1148
AflIII ACRYGT 1 cut(s) 1238
AgeI ACCGGT 2 cut(s) 734, 1276
AgsI TTSAA 6 cut(s) 45, 601, 704, 997, 1048, 1360
AjiI CACGTC 1 cut(s) 196
AjnI CCWGG 2 cut(s) 1255, 1390
Alw21I GWGCWC 2 cut(s) 478, 967
Alw26I GTCTC 3 cut(s) 824, 1024, 1370
Alw44I GTGCAC 1 cut(s) 963
AlwI GGATC 4 cut(s) 122, 209, 662, 719
Aor13HI TCCGGA 1 cut(s) 1332
AoxI GGCC 3 cut(s) 190, 842, 1179
ApaLI GTGCAC 1 cut(s) 963
ApeKI GCWGC 2 cut(s) 311, 1244
ApoI RAATTY 4 cut(s) 483, 709, 907, 1041
AsiGI ACCGGT 2 cut(s) 734, 1276
AspLEI GCGC 2 cut(s) 960, 1207
AspS9I GGNCC 4 cut(s) 68, 268, 391, 1179
AsuC2I CCSGG 3 cut(s) 563, 838, 1014
AsuHPI GGTGA 5 cut(s) 250, 341, 595, 866, 1291
AvaII GGWCC 3 cut(s) 68, 268, 391
BaeGI GKGCMC 1 cut(s) 967
BanII GRGCYC 2 cut(s) 478, 1327
BauI CACGAG 2 cut(s) 477, 1371
Bbv12I GWGCWC 2 cut(s) 478, 967
BbvCI CCTCAGC 1 cut(s) 395
BbvI GCAGC 2 cut(s) 298, 1256
BccI CCATC 2 cut(s) 269, 1169
BciT130I CCWGG 2 cut(s) 1257, 1392
BclI TGATCA 3 cut(s) 301, 409, 912
BcnI CCSGG 3 cut(s) 563, 838, 1014
BcoDI GTCTC 3 cut(s) 824, 1024, 1370
BfaI CTAG 4 cut(s) 758, 954, 1196, 1416
BfmI CTRYAG 1 cut(s) 400
BfoI RGCGCY 1 cut(s) 1208
BglI GCCNNNNNGGC 1 cut(s) 1187
BisI GCNGC 4 cut(s) 309, 312, 891, 1245
BlsI GCNGC 4 cut(s) 310, 313, 892, 1246
Bme1390I CCNGG 5 cut(s) 563, 838, 1014, 1257, 1392
Bme18I GGWCC 3 cut(s) 68, 268, 391
BmgBI CACGTC 1 cut(s) 196
BmgT120I GGNCC 4 cut(s) 68, 268, 391, 1179
BmiI GGNNCC 4 cut(s) 270, 1180, 1254, 1337
BmrFI CCNGG 5 cut(s) 563, 838, 1014, 1257, 1392
BmrI ACTGGG 2 cut(s) 331, 1330
BmsI GCATC 1 cut(s) 756
BmuI ACTGGG 2 cut(s) 331, 1330
BplI GAGNNNNNCTC 2 cut(s) 526, 558
BpmI CTGGAG 1 cut(s) 1239
Bpu10I CCTNAGC 1 cut(s) 395
BpuMI CCSGG 3 cut(s) 563, 838, 1014
Bsa29I ATCGAT 1 cut(s) 1077
BsaHI GRCGYC 1 cut(s) 210
BsaI GGTCTC 1 cut(s) 1370
BsaJI CCNNGG 3 cut(s) 516, 656, 1390
BsaWI WCCGGW 7 cut(s) 580, 670, 734, 869, 903, 1276, 1332
Bsc4I CCNNNNNNNGG 6 cut(s) 551, 734, 851, 941, 1019, 1148
Bse118I RCCGGY 2 cut(s) 734, 1276
Bse1I ACTGG 2 cut(s) 326, 1325
Bse3DI GCAATG 1 cut(s) 1237
BseAI TCCGGA 1 cut(s) 1332
BseBI CCWGG 2 cut(s) 1257, 1392
BseCI ATCGAT 1 cut(s) 1077
BseDI CCNNGG 3 cut(s) 516, 656, 1390
BseLI CCNNNNNNNGG 6 cut(s) 551, 734, 851, 941, 1019, 1148
BseMI GCAATG 1 cut(s) 1237
BseMII CTCAG 2 cut(s) 409, 1340
BseNI ACTGG 2 cut(s) 326, 1325
BseRI GAGGAG 2 cut(s) 224, 1275
BseSI GKGCMC 1 cut(s) 967
BseXI GCAGC 2 cut(s) 298, 1256
BsgI GTGCAG 1 cut(s) 1263
Bsh1236I CGCG 2 cut(s) 893, 960
BshFI GGCC 3 cut(s) 192, 844, 1181
BshTI ACCGGT 2 cut(s) 734, 1276
BshVI ATCGAT 1 cut(s) 1077
BsiHKAI GWGCWC 2 cut(s) 478, 967
BslFI GGGAC 3 cut(s) 254, 425, 517
BslI CCNNNNNNNGG 6 cut(s) 551, 734, 851, 941, 1019, 1148
BsmAI GTCTC 3 cut(s) 824, 1024, 1370
BsmFI GGGAC 3 cut(s) 254, 425, 517
BsmI GAATGC 1 cut(s) 1271
BsnI GGCC 3 cut(s) 192, 844, 1181
Bso31I GGTCTC 1 cut(s) 1370
Bsp1286I GDGCHC 3 cut(s) 478, 967, 1327
Bsp13I TCCGGA 1 cut(s) 1332
Bsp19I CCATGG 1 cut(s) 516
BspACI CCGC 8 cut(s) 309, 353, 891, 935, 960, 1086, 1169, 1221
BspANI GGCC 3 cut(s) 192, 844, 1181
BspCNI CTCAG 2 cut(s) 408, 1339
BspDI ATCGAT 1 cut(s) 1077
BspEI TCCGGA 1 cut(s) 1332
BspFNI CGCG 2 cut(s) 893, 960
BspLI GGNNCC 4 cut(s) 270, 1180, 1254, 1337
BspPI GGATC 4 cut(s) 122, 209, 662, 719
BspQI GCTCTTC 1 cut(s) 531
BspTNI GGTCTC 1 cut(s) 1370
BsrDI GCAATG 1 cut(s) 1237
BsrFI RCCGGY 2 cut(s) 734, 1276
BsrI ACTGG 2 cut(s) 326, 1325
BssAI RCCGGY 2 cut(s) 734, 1276
BssECI CCNNGG 3 cut(s) 516, 656, 1390
BssNI GRCGYC 1 cut(s) 210
BssSI CACGAG 2 cut(s) 477, 1371
BssT1I CCWWGG 2 cut(s) 516, 656
Bst2BI CACGAG 2 cut(s) 477, 1371
Bst2UI CCWGG 2 cut(s) 1257, 1392
Bst4CI ACNGT 6 cut(s) 88, 404, 594, 854, 1058, 1285
Bst6I CTCTTC 2 cut(s) 29, 531
BstACI GRCGYC 1 cut(s) 210
BstAPI GCANNNNNTGC 2 cut(s) 1241, 1304
BstC8I GCNNGC 6 cut(s) 103, 190, 1203, 1219, 1296, 1300
BstDEI CTNAG 3 cut(s) 395, 470, 1326
BstDSI CCRYGG 1 cut(s) 516
BstFNI CGCG 2 cut(s) 893, 960
BstH2I RGCGCY 1 cut(s) 1208
BstHHI GCGC 2 cut(s) 960, 1207
BstMAI GTCTC 3 cut(s) 824, 1024, 1370
BstMWI GCNNNNNNNGC 8 cut(s) 305, 521, 1187, 1227, 1241, 1250, 1304, 1350
BstNI CCWGG 2 cut(s) 1257, 1392
BstNSI RCATGY 2 cut(s) 1242, 1298
BstSCI CCNGG 5 cut(s) 561, 836, 1012, 1255, 1390
BstSFI CTRYAG 1 cut(s) 400
BstSLI GKGCMC 1 cut(s) 967
BstUI CGCG 2 cut(s) 893, 960
BstV1I GCAGC 2 cut(s) 298, 1256
Bsu15I ATCGAT 1 cut(s) 1077
BsuRI GGCC 3 cut(s) 192, 844, 1181
BsuTUI ATCGAT 1 cut(s) 1077
BtgI CCRYGG 1 cut(s) 516
BtgZI GCGATG 1 cut(s) 803
BtrI CACGTC 1 cut(s) 196
BtsIMutI CAGTG 1 cut(s) 93
Cac8I GCNNGC 6 cut(s) 103, 190, 1203, 1219, 1296, 1300
CfoI GCGC 2 cut(s) 960, 1207
Cfr10I RCCGGY 2 cut(s) 734, 1276
Cfr13I GGNCC 4 cut(s) 68, 268, 391, 1179
ClaI ATCGAT 1 cut(s) 1077
CseI GACGC 2 cut(s) 218, 530
Csp6I GTAC 4 cut(s) 555, 945, 1059, 1318
CspAI ACCGGT 2 cut(s) 734, 1276
CviAII CATG 7 cut(s) 51, 265, 448, 517, 863, 1239, 1295
CviQI GTAC 4 cut(s) 555, 945, 1059, 1318
DdeI CTNAG 3 cut(s) 395, 470, 1326
DraI TTTAAA 1 cut(s) 1147
Eam1104I CTCTTC 2 cut(s) 29, 531
EarI CTCTTC 2 cut(s) 29, 531
Ecl136II GAGCTC 1 cut(s) 476
Eco130I CCWWGG 2 cut(s) 516, 656
Eco24I GRGCYC 2 cut(s) 478, 1327
Eco31I GGTCTC 1 cut(s) 1370
Eco32I GATATC 2 cut(s) 571, 859
Eco47I GGWCC 3 cut(s) 68, 268, 391
Eco53kI GAGCTC 1 cut(s) 476
EcoICRI GAGCTC 1 cut(s) 476
EcoO109I RGGNCCY 1 cut(s) 391
EcoRI GAATTC 2 cut(s) 483, 709
EcoRII CCWGG 2 cut(s) 1255, 1390
EcoRV GATATC 2 cut(s) 571, 859
EcoT14I CCWWGG 2 cut(s) 516, 656
EcoT38I GRGCYC 2 cut(s) 478, 1327
ErhI CCWWGG 2 cut(s) 516, 656
FaeI CATG 7 cut(s) 54, 268, 451, 520, 866, 1242, 1298
FaqI GGGAC 3 cut(s) 254, 425, 517
FatI CATG 7 cut(s) 50, 264, 447, 516, 862, 1238, 1294
FauI CCCGC 2 cut(s) 360, 942
FbaI TGATCA 3 cut(s) 301, 409, 912
FblI GTMKAC 1 cut(s) 662
Fnu4HI GCNGC 4 cut(s) 309, 312, 891, 1245
FriOI GRGCYC 2 cut(s) 478, 1327
Fsp4HI GCNGC 4 cut(s) 309, 312, 891, 1245
FspBI CTAG 4 cut(s) 758, 954, 1196, 1416
GlaI GCGC 2 cut(s) 959, 1206
GluI GCNGC 4 cut(s) 309, 312, 891, 1245
GsuI CTGGAG 1 cut(s) 1239
HaeII RGCGCY 1 cut(s) 1208
HaeIII GGCC 3 cut(s) 192, 844, 1181
HgaI GACGC 2 cut(s) 218, 530
HhaI GCGC 2 cut(s) 960, 1207
Hin1I GRCGYC 1 cut(s) 210
Hin1II CATG 7 cut(s) 54, 268, 451, 520, 866, 1242, 1298
Hin6I GCGC 2 cut(s) 958, 1205
HinP1I GCGC 2 cut(s) 958, 1205
HinfI GANTC 6 cut(s) 4, 363, 369, 704, 773, 1112
HphI GGTGA 5 cut(s) 250, 341, 595, 866, 1291
Hpy166II GTNNAC 8 cut(s) 71, 463, 643, 663, 745, 947, 965, 1061
Hpy188I TCNGA 4 cut(s) 368, 409, 810, 832
Hpy188III TCNNGA 7 cut(s) 218, 413, 758, 916, 1020, 1333, 1373
Hpy8I GTNNAC 8 cut(s) 71, 463, 643, 663, 745, 947, 965, 1061
Hpy99I CGWCG 2 cut(s) 898, 979
HpyAV CCTTC 2 cut(s) 350, 555
HpyCH4III ACNGT 6 cut(s) 88, 404, 594, 854, 1058, 1285
HpyCH4IV ACGT 4 cut(s) 195, 255, 896, 977
HpyCH4V TGCA 7 cut(s) 101, 965, 1235, 1244, 1274, 1298, 1407
HpyF10VI GCNNNNNNNGC 8 cut(s) 305, 521, 1187, 1227, 1241, 1250, 1304, 1350
HpyF3I CTNAG 3 cut(s) 395, 470, 1326
HpySE526I ACGT 4 cut(s) 195, 255, 896, 977
Hsp92I GRCGYC 1 cut(s) 210
Hsp92II CATG 7 cut(s) 54, 268, 451, 520, 866, 1242, 1298
HspAI GCGC 2 cut(s) 958, 1205
Kpn2I TCCGGA 1 cut(s) 1332
Ksp22I TGATCA 3 cut(s) 301, 409, 912
LguI GCTCTTC 1 cut(s) 531
LmnI GCTCC 3 cut(s) 237, 872, 1258
Lsp1109I GCAGC 2 cut(s) 298, 1256
LweI GCATC 1 cut(s) 756
MaeI CTAG 4 cut(s) 758, 954, 1196, 1416
MaeII ACGT 4 cut(s) 195, 255, 896, 977
MaeIII GTNAC 6 cut(s) 256, 588, 1130, 1279, 1285, 1420
MhlI GDGCHC 3 cut(s) 478, 967, 1327
MluCI AATT 6 cut(s) 108, 128, 483, 709, 907, 1041
MroI TCCGGA 1 cut(s) 1332
MseI TTAA 4 cut(s) 183, 675, 1146, 1209
MslI CAYNNNNRTG 1 cut(s) 263
MspA1I CMGCKG 2 cut(s) 311, 1086
MspR9I CCNGG 5 cut(s) 563, 838, 1014, 1257, 1392
Mva1269I GAATGC 1 cut(s) 1271
MvaI CCWGG 2 cut(s) 1257, 1392
MvnI CGCG 2 cut(s) 893, 960
MwoI GCNNNNNNNGC 8 cut(s) 305, 521, 1187, 1227, 1241, 1250, 1304, 1350
NciI CCSGG 3 cut(s) 563, 838, 1014
NcoI CCATGG 1 cut(s) 516
NlaIII CATG 7 cut(s) 54, 268, 451, 520, 866, 1242, 1298
NlaIV GGNNCC 4 cut(s) 270, 1180, 1254, 1337
NmuCI GTSAC 2 cut(s) 256, 1279
NspI RCATGY 2 cut(s) 1242, 1298
PaeI GCATGC 1 cut(s) 1298
PciI ACATGT 1 cut(s) 1238
PciSI GCTCTTC 1 cut(s) 531
PcsI WCGNNNNNNNCGW 1 cut(s) 384
PctI GAATGC 1 cut(s) 1271
PfeI GAWTC 5 cut(s) 363, 369, 704, 773, 1112
PfoI TCCNGGA 2 cut(s) 561, 1255
PinAI ACCGGT 2 cut(s) 734, 1276
PkrI GCNGC 4 cut(s) 310, 313, 892, 1246
PpuMI RGGWCCY 1 cut(s) 391
PscI ACATGT 1 cut(s) 1238
Psp124BI GAGCTC 1 cut(s) 478
Psp5II RGGWCCY 1 cut(s) 391
Psp6I CCWGG 2 cut(s) 1255, 1390
PspGI CCWGG 2 cut(s) 1255, 1390
PspN4I GGNNCC 4 cut(s) 270, 1180, 1254, 1337
PspPI GGNCC 4 cut(s) 68, 268, 391, 1179
PspPPI RGGWCCY 1 cut(s) 391
RsaI GTAC 4 cut(s) 556, 946, 1060, 1319
RsaNI GTAC 4 cut(s) 555, 945, 1059, 1318
RseI CAYNNNNRTG 1 cut(s) 263
SacI GAGCTC 1 cut(s) 478
SapI GCTCTTC 1 cut(s) 531
SaqAI TTAA 4 cut(s) 183, 675, 1146, 1209
SatI GCNGC 4 cut(s) 309, 312, 891, 1245
Sau96I GGNCC 4 cut(s) 68, 268, 391, 1179
ScrFI CCNGG 5 cut(s) 563, 838, 1014, 1257, 1392
SduI GDGCHC 3 cut(s) 478, 967, 1327
SfaNI GCATC 1 cut(s) 756
SfcI CTRYAG 1 cut(s) 400
SgrAI CRCCGGYG 1 cut(s) 1276
SinI GGWCC 3 cut(s) 68, 268, 391
SmiMI CAYNNNNRTG 1 cut(s) 263
SphI GCATGC 1 cut(s) 1298
Sse9I AATT 6 cut(s) 108, 128, 483, 709, 907, 1041
SsiI CCGC 8 cut(s) 309, 353, 891, 935, 960, 1086, 1169, 1221
SspI AATATT 1 cut(s) 880
SspMI CTAG 4 cut(s) 758, 954, 1196, 1416
SstI GAGCTC 1 cut(s) 478
StyD4I CCNGG 5 cut(s) 561, 836, 1012, 1255, 1390
StyI CCWWGG 2 cut(s) 516, 656
TaaI ACNGT 6 cut(s) 88, 404, 594, 854, 1058, 1285
TaiI ACGT 4 cut(s) 198, 258, 899, 980
TaqI TCGA 5 cut(s) 533, 548, 707, 771, 1077
TasI AATT 6 cut(s) 108, 128, 483, 709, 907, 1041
TauI GCSGC 2 cut(s) 311, 893
TfiI GAWTC 5 cut(s) 363, 369, 704, 773, 1112
Tru1I TTAA 4 cut(s) 183, 675, 1146, 1209
Tru9I TTAA 4 cut(s) 183, 675, 1146, 1209
TscAI CASTG 1 cut(s) 93
TseFI GTSAC 2 cut(s) 256, 1279
TseI GCWGC 2 cut(s) 311, 1244
Tsp45I GTSAC 2 cut(s) 256, 1279
TspDTI ATGAA 3 cut(s) 39, 879, 1014
TspGWI ACGGA 1 cut(s) 1131
TspRI CASTG 1 cut(s) 93
VneI GTGCAC 1 cut(s) 963
VpaK11BI GGWCC 3 cut(s) 68, 268, 391
XapI RAATTY 4 cut(s) 483, 709, 907, 1041
XbaI TCTAGA 1 cut(s) 757
XceI RCATGY 2 cut(s) 1242, 1298
XmiI GTMKAC 1 cut(s) 662
XspI CTAG 4 cut(s) 758, 954, 1196, 1416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.