Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012279.1

Orthogroup ID

OG0013919

Physical Location & Seq

Genomic Coordinates Forward (+)

26719 .. 27951

Gene Structure 1233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012279.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

atgatcctcgatttttctttcctcttgacagtcgctgagatttcgagcaaaattggcataaactatgggcaggtagggaacaatttgccatctccaagccggtccatcgagcacatcgatttttctttcctcttgacagttgctgagatttcgagcaaaattggcataaactatgggcaggtagggaacaatttgccatctccaagccggtccatcgagcacatcaaatccatgaaaatagggcgtgtgaagctctatgatgccaacccggaaattttaagactcctatccggaaccaatatctcagtctccatcatggtcccaaacaatgaaatcactggcattgcctcagaccaatccaaagcagatgaatgggtcagaaacaatgtcctcccctactaccccaaaaccatgatccggtacctcctcgtaggcaatgaaatcctcagctatttctcggaccaagatcgccaaatatggcacgatctagtcccggccatgactaaaatcaagtattctctcaaatccaaaaatatcactaacatcaaaataggtaccccattagcaatggacgtggttcaaacgagtttcccaccatcaagtagctctttccgatccgatatctcggaaacagtcatggttcccttgctcagattcttgaaccggaccaagtcatttttcttcattgatgtgtacccttttttcccatggtcctcaaaccccaaagacattagcctagactatgcattattgaaaaacattagtaacaacagtactctactgtatactgacccaggaagtggtttggtctataccaatcttctggaccaaatgcttgactccttgatcttcgccatgaccaagctcggctacccaaacatccggcttttgatagcggagactgggtggccaaactccagcagtgagcaaaaccaaccgggggctaatgtacacgatgccgccacatataaccgaaatttggtacaaaaaattgttactaagccaacaattgggacaccagcgaggcctggtgtggtgataccaaccttcatatttgcattgtatgatgaaaatcagaagggtgggcctggaacagagaggcactggggattgttatacgctgatggaactccggtttatgatattgacttgacggggaagcgatcggcaaatgactacgaaccattgccggagaagaggcacttcataaagggaattcattacgacgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001871 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0022414 GO:0022607 GO:0030198 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

410

Amino Acids

45.88

Weight (kDa)

6.67

Isoelectric Point (pI)

46.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23770 AT4G14080
fragaria_vesca	FvH4_4g13120
malus_domestica	MD04G1019000.v1.1
prunus_persica	Prupe.1G168300_v2.0.a1
pyrus_communis	pycom04g01520
rosa_chinensis	RchiOBHm_Chr4g0412901
rosa_laevigata	RLG00000008249
rosa_multiflora	Rmu_sc0005621.1_g000022 Rmu_sc0012279.1_g000004
rosa_roxburghii	Rroxscaffold_5G00357140
rosa_rugosa	Rorug04G0117400
rosa_samantha	Rh4AG176300 Rh4BG176700 Rh4CG187300 Rh4DG173600
rosa_wichuraiana	Rw4G014800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	61, 169
Acc65I	GGTACC	2 cut(s)	420, 554
AccB1I	GGYRCC	2 cut(s)	420, 554
AccB7I	CCANNNNNTGG	2 cut(s)	800, 1010
AccI	GTMKAC	1 cut(s)	785
AccIII	TCCGGA	1 cut(s)	290
AciI	CCGC	2 cut(s)	896, 960
AclWI	GGATC	2 cut(s)	409, 609
AcoI	YGGCCR	2 cut(s)	495, 908
AcsI	RAATTY	3 cut(s)	273, 976, 1215
AfaI	GTAC	6 cut(s)	422, 556, 695, 775, 951, 984
AfiI	CCNNNNNNNGG	5 cut(s)	417, 800, 940, 979, 1010
AgsI	TTSAA	3 cut(s)	581, 661, 754
AjiI	CACGTC	1 cut(s)	574
AjnI	CCWGG	3 cut(s)	793, 1027, 1087
AjuI	GAANNNNNNNTTGG	2 cut(s)	662, 694
AluBI	AGCT	4 cut(s)	253, 450, 606, 865
AluI	AGCT	4 cut(s)	253, 450, 606, 865
Alw21I	GWGCWC	2 cut(s)	114, 222
Alw26I	GTCTC	2 cut(s)	313, 893
AlwI	GGATC	2 cut(s)	409, 609
AlwNI	CAGNNNCTG	2 cut(s)	35, 143
Aor13HI	TCCGGA	1 cut(s)	290
AoxI	GGCC	4 cut(s)	495, 908, 1025, 1085
ApoI	RAATTY	3 cut(s)	273, 976, 1215
Asp718I	GGTACC	2 cut(s)	420, 554
AspS9I	GGNCC	8 cut(s)	102, 210, 319, 460, 666, 711, 826, 1085
AsuC2I	CCSGG	3 cut(s)	269, 494, 939
AsuHPI	GGTGA	1 cut(s)	1048
AvaII	GGWCC	7 cut(s)	102, 210, 319, 460, 666, 711, 826
BalI	TGGCCA	1 cut(s)	910
BanI	GGYRCC	2 cut(s)	420, 554
Bbv12I	GWGCWC	2 cut(s)	114, 222
BbvCI	CCTCAGC	1 cut(s)	446
BccI	CCATC	7 cut(s)	97, 113, 205, 221, 320, 604, 1118
BciT130I	CCWGG	3 cut(s)	795, 1029, 1089
BcnI	CCSGG	3 cut(s)	269, 494, 939
BcoDI	GTCTC	2 cut(s)	313, 893
BfaI	CTAG	2 cut(s)	488, 737
BfuAI	ACCTGC	2 cut(s)	61, 169
BisI	GCNGC	1 cut(s)	960
BlsI	GCNGC	1 cut(s)	961
BmcAI	AGTACT	1 cut(s)	775
Bme1390I	CCNGG	6 cut(s)	269, 494, 795, 939, 1029, 1089
Bme18I	GGWCC	7 cut(s)	102, 210, 319, 460, 666, 711, 826
BmgBI	CACGTC	1 cut(s)	574
BmgT120I	GGNCC	8 cut(s)	102, 210, 319, 460, 666, 711, 826, 1085
BmiI	GGNNCC	5 cut(s)	295, 321, 422, 556, 642
BmrFI	CCNGG	6 cut(s)	269, 494, 795, 939, 1029, 1089
BmrI	ACTGGG	2 cut(s)	912, 1114
BmsI	GCATC	2 cut(s)	250, 946
BmuI	ACTGGG	2 cut(s)	912, 1114
BpmI	CTGGAG	1 cut(s)	901
Bpu10I	CCTNAGC	1 cut(s)	446
BpuMI	CCSGG	3 cut(s)	269, 494, 939
Bsa29I	ATCGAT	1 cut(s)	117
BsaBI	GATNNNNATC	1 cut(s)	1071
BsaJI	CCNNGG	3 cut(s)	707, 793, 938
BsaWI	WCCGGW	4 cut(s)	290, 417, 663, 1132
BsaXI	ACNNNNNCTCC	2 cut(s)	890, 920
Bsc4I	CCNNNNNNNGG	5 cut(s)	417, 800, 940, 979, 1010
Bse118I	RCCGGY	2 cut(s)	99, 207
Bse1I	ACTGG	3 cut(s)	343, 907, 1109
Bse3DI	GCAATG	4 cut(s)	342, 442, 573, 1184
Bse8I	GATNNNNATC	1 cut(s)	1071
BseAI	TCCGGA	1 cut(s)	290
BseBI	CCWGG	3 cut(s)	795, 1029, 1089
BseCI	ATCGAT	1 cut(s)	117
BseDI	CCNNGG	3 cut(s)	707, 793, 938
BseGI	GGATG	1 cut(s)	879
BseJI	GATNNNNATC	1 cut(s)	1071
BseLI	CCNNNNNNNGG	5 cut(s)	417, 800, 940, 979, 1010
BseMI	GCAATG	4 cut(s)	342, 442, 573, 1184
BseMII	CTCAG	6 cut(s)	27, 135, 318, 363, 460, 664
BseNI	ACTGG	3 cut(s)	343, 907, 1109
BseRI	GAGGAG	1 cut(s)	416
Bsh1285I	CGRYCG	1 cut(s)	1166
BshFI	GGCC	4 cut(s)	497, 910, 1027, 1087
BshNI	GGYRCC	2 cut(s)	420, 554
BshVI	ATCGAT	1 cut(s)	117
BsiEI	CGRYCG	1 cut(s)	1166
BsiHKAI	GWGCWC	2 cut(s)	114, 222
BslFI	GGGAC	3 cut(s)	305, 476, 1027
BslI	CCNNNNNNNGG	5 cut(s)	417, 800, 940, 979, 1010
BsmAI	GTCTC	2 cut(s)	313, 893
BsmFI	GGGAC	3 cut(s)	305, 476, 1027
BsnI	GGCC	4 cut(s)	497, 910, 1027, 1087
Bsp1286I	GDGCHC	2 cut(s)	114, 222
Bsp13I	TCCGGA	1 cut(s)	290
Bsp1407I	TGTACA	1 cut(s)	949
Bsp143I	GATC	7 cut(s)	3, 414, 466, 484, 614, 846, 1163
Bsp19I	CCATGG	1 cut(s)	707
BspACI	CCGC	2 cut(s)	896, 960
BspANI	GGCC	4 cut(s)	497, 910, 1027, 1087
BspCNI	CTCAG	6 cut(s)	28, 136, 317, 362, 459, 663
BspDI	ATCGAT	1 cut(s)	117
BspEI	TCCGGA	1 cut(s)	290
BspLI	GGNNCC	5 cut(s)	295, 321, 422, 556, 642
BspMI	ACCTGC	2 cut(s)	61, 169
BspPI	GGATC	2 cut(s)	409, 609
BspT107I	GGYRCC	2 cut(s)	420, 554
BsrDI	GCAATG	4 cut(s)	342, 442, 573, 1184
BsrFI	RCCGGY	2 cut(s)	99, 207
BsrGI	TGTACA	1 cut(s)	949
BsrI	ACTGG	3 cut(s)	343, 907, 1109
BssAI	RCCGGY	2 cut(s)	99, 207
BssECI	CCNNGG	3 cut(s)	707, 793, 938
BssMI	GATC	7 cut(s)	3, 414, 466, 484, 614, 846, 1163
BssNAI	GTATAC	1 cut(s)	786
BssT1I	CCWWGG	1 cut(s)	707
Bst1107I	GTATAC	1 cut(s)	786
Bst2UI	CCWGG	3 cut(s)	795, 1029, 1089
Bst4CI	ACNGT	5 cut(s)	31, 139, 634, 773, 783
Bst6I	CTCTTC	1 cut(s)	1190
BstAUI	TGTACA	1 cut(s)	949
BstDEI	CTNAG	7 cut(s)	36, 144, 304, 349, 446, 650, 999
BstDSI	CCRYGG	1 cut(s)	707
BstF5I	GGATG	1 cut(s)	879
BstKTI	GATC	7 cut(s)	6, 417, 469, 487, 617, 849, 1166
BstMAI	GTCTC	2 cut(s)	313, 893
BstMBI	GATC	7 cut(s)	3, 414, 466, 484, 614, 846, 1163
BstMCI	CGRYCG	1 cut(s)	1166
BstMWI	GCNNNNNNNGC	3 cut(s)	54, 162, 250
BstNI	CCWGG	3 cut(s)	795, 1029, 1089
BstSCI	CCNGG	6 cut(s)	267, 492, 793, 937, 1027, 1087
BstXI	CCANNNNNNTGG	1 cut(s)	823
BstZ17I	GTATAC	1 cut(s)	786
Bsu15I	ATCGAT	1 cut(s)	117
BsuRI	GGCC	4 cut(s)	497, 910, 1027, 1087
BsuTUI	ATCGAT	1 cut(s)	117
BtgI	CCRYGG	1 cut(s)	707
BtrI	CACGTC	1 cut(s)	574
BtsCI	GGATG	1 cut(s)	879
BtsI	GCAGTG	1 cut(s)	928
BtsIMutI	CAGTG	3 cut(s)	336, 928, 1102
BveI	ACCTGC	2 cut(s)	61, 169
CaiI	CAGNNNCTG	2 cut(s)	35, 143
Cfr10I	RCCGGY	2 cut(s)	99, 207
Cfr13I	GGNCC	8 cut(s)	102, 210, 319, 460, 666, 711, 826, 1085
ClaI	ATCGAT	1 cut(s)	117
Csp6I	GTAC	6 cut(s)	421, 555, 694, 774, 950, 983
CspCI	CAANNNNNGTGG	2 cut(s)	555, 590
CviAII	CATG	7 cut(s)	232, 316, 412, 499, 637, 708, 856
CviQI	GTAC	6 cut(s)	421, 555, 694, 774, 950, 983
DdeI	CTNAG	7 cut(s)	36, 144, 304, 349, 446, 650, 999
DpnI	GATC	7 cut(s)	5, 416, 468, 486, 616, 848, 1165
DpnII	GATC	7 cut(s)	3, 414, 466, 484, 614, 846, 1163
EaeI	YGGCCR	2 cut(s)	495, 908
Eam1104I	CTCTTC	1 cut(s)	1190
EarI	CTCTTC	1 cut(s)	1190
Eco130I	CCWWGG	1 cut(s)	707
Eco147I	AGGCCT	1 cut(s)	1027
Eco32I	GATATC	1 cut(s)	622
Eco47I	GGWCC	7 cut(s)	102, 210, 319, 460, 666, 711, 826
EcoRI	GAATTC	1 cut(s)	1215
EcoRII	CCWGG	3 cut(s)	793, 1027, 1087
EcoRV	GATATC	1 cut(s)	622
EcoT14I	CCWWGG	1 cut(s)	707
EcoT22I	ATGCAT	1 cut(s)	748
ErhI	CCWWGG	1 cut(s)	707
FaeI	CATG	7 cut(s)	235, 319, 415, 502, 640, 711, 859
FalI	AAGNNNNNCTT	4 cut(s)	592, 624, 1187, 1219
FaqI	GGGAC	3 cut(s)	305, 476, 1027
FatI	CATG	7 cut(s)	231, 315, 411, 498, 636, 707, 855
FblI	GTMKAC	1 cut(s)	785
Fnu4HI	GCNGC	1 cut(s)	960
FokI	GGATG	1 cut(s)	866
Fsp4HI	GCNGC	1 cut(s)	960
FspBI	CTAG	2 cut(s)	488, 737
GluI	GCNGC	1 cut(s)	960
GsuI	CTGGAG	1 cut(s)	901
HaeIII	GGCC	4 cut(s)	497, 910, 1027, 1087
Hin1II	CATG	7 cut(s)	235, 319, 415, 502, 640, 711, 859
HinfI	GANTC	3 cut(s)	282, 654, 839
HphI	GGTGA	1 cut(s)	1048
Hpy166II	GTNNAC	3 cut(s)	694, 786, 952
Hpy188I	TCNGA	8 cut(s)	352, 380, 460, 614, 619, 628, 653, 1077
Hpy188III	TCNNGA	5 cut(s)	25, 133, 291, 658, 824
Hpy8I	GTNNAC	3 cut(s)	694, 786, 952
Hpy99I	CGWCG	1 cut(s)	1229
HpyAV	CCTTC	2 cut(s)	1057, 1072
HpyCH4III	ACNGT	5 cut(s)	31, 139, 634, 773, 783
HpyCH4IV	ACGT	1 cut(s)	573
HpyCH4V	TGCA	2 cut(s)	746, 1058
HpyF10VI	GCNNNNNNNGC	3 cut(s)	54, 162, 250
HpyF3I	CTNAG	7 cut(s)	36, 144, 304, 349, 446, 650, 999
HpySE526I	ACGT	1 cut(s)	573
Hsp92II	CATG	7 cut(s)	235, 319, 415, 502, 640, 711, 859
Kpn2I	TCCGGA	1 cut(s)	290
KpnI	GGTACC	2 cut(s)	424, 558
Kzo9I	GATC	7 cut(s)	3, 414, 466, 484, 614, 846, 1163
LweI	GCATC	2 cut(s)	250, 946
MaeI	CTAG	2 cut(s)	488, 737
MaeII	ACGT	1 cut(s)	573
MaeIII	GTNAC	2 cut(s)	764, 994
MalI	GATC	7 cut(s)	5, 416, 468, 486, 616, 848, 1165
MboI	GATC	7 cut(s)	3, 414, 466, 484, 614, 846, 1163
MboII	GAAGA	4 cut(s)	673, 812, 841, 1207
MfeI	CAATTG	1 cut(s)	1008
MhlI	GDGCHC	2 cut(s)	114, 222
MlsI	TGGCCA	1 cut(s)	910
MluCI	AATT	9 cut(s)	51, 82, 159, 190, 273, 976, 990, 1008, 1215
MluNI	TGGCCA	1 cut(s)	910
MlyI	GAGTC	2 cut(s)	276, 833
Mox20I	TGGCCA	1 cut(s)	910
Mph1103I	ATGCAT	1 cut(s)	748
MroI	TCCGGA	1 cut(s)	290
MscI	TGGCCA	1 cut(s)	910
MseI	TTAA	1 cut(s)	278
MslI	CAYNNNNRTG	1 cut(s)	689
Msp20I	TGGCCA	1 cut(s)	910
MspR9I	CCNGG	6 cut(s)	269, 494, 795, 939, 1029, 1089
MunI	CAATTG	1 cut(s)	1008
MvaI	CCWGG	3 cut(s)	795, 1029, 1089
MwoI	GCNNNNNNNGC	3 cut(s)	54, 162, 250
NciI	CCSGG	3 cut(s)	269, 494, 939
NcoI	CCATGG	1 cut(s)	707
NdeII	GATC	7 cut(s)	3, 414, 466, 484, 614, 846, 1163
NlaIII	CATG	7 cut(s)	235, 319, 415, 502, 640, 711, 859
NlaIV	GGNNCC	5 cut(s)	295, 321, 422, 556, 642
NmeAIII	GCCGAG	1 cut(s)	846
NsiI	ATGCAT	1 cut(s)	748
PceI	AGGCCT	1 cut(s)	1027
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	654
PflFI	GACNNNGTC	1 cut(s)	670
PflMI	CCANNNNNTGG	2 cut(s)	800, 1010
PkrI	GCNGC	1 cut(s)	961
Ple19I	CGATCG	1 cut(s)	1166
PleI	GAGTC	2 cut(s)	276, 833
PpsI	GAGTC	2 cut(s)	276, 833
Psp6I	CCWGG	3 cut(s)	793, 1027, 1087
PspGI	CCWGG	3 cut(s)	793, 1027, 1087
PspN4I	GGNNCC	5 cut(s)	295, 321, 422, 556, 642
PspPI	GGNCC	8 cut(s)	102, 210, 319, 460, 666, 711, 826, 1085
PstNI	CAGNNNCTG	2 cut(s)	35, 143
PsyI	GACNNNGTC	1 cut(s)	670
PvuI	CGATCG	1 cut(s)	1166
RsaI	GTAC	6 cut(s)	422, 556, 695, 775, 951, 984
RsaNI	GTAC	6 cut(s)	421, 555, 694, 774, 950, 983
RseI	CAYNNNNRTG	1 cut(s)	689
SaqAI	TTAA	1 cut(s)	278
SatI	GCNGC	1 cut(s)	960
Sau3AI	GATC	7 cut(s)	3, 414, 466, 484, 614, 846, 1163
Sau96I	GGNCC	8 cut(s)	102, 210, 319, 460, 666, 711, 826, 1085
ScaI	AGTACT	1 cut(s)	775
SchI	GAGTC	2 cut(s)	276, 833
ScrFI	CCNGG	6 cut(s)	269, 494, 795, 939, 1029, 1089
SduI	GDGCHC	2 cut(s)	114, 222
SfaNI	GCATC	2 cut(s)	250, 946
SinI	GGWCC	7 cut(s)	102, 210, 319, 460, 666, 711, 826
SmiMI	CAYNNNNRTG	1 cut(s)	689
Sse9I	AATT	9 cut(s)	51, 82, 159, 190, 273, 976, 990, 1008, 1215
SseBI	AGGCCT	1 cut(s)	1027
SsiI	CCGC	2 cut(s)	896, 960
SspMI	CTAG	2 cut(s)	488, 737
StuI	AGGCCT	1 cut(s)	1027
StyD4I	CCNGG	6 cut(s)	267, 492, 793, 937, 1027, 1087
StyI	CCWWGG	1 cut(s)	707
TaaI	ACNGT	5 cut(s)	31, 139, 634, 773, 783
TaiI	ACGT	1 cut(s)	576
TaqI	TCGA	6 cut(s)	9, 44, 108, 117, 152, 216
TasI	AATT	9 cut(s)	51, 82, 159, 190, 273, 976, 990, 1008, 1215
TatI	WGTACW	2 cut(s)	773, 949
TauI	GCSGC	1 cut(s)	962
TfiI	GAWTC	1 cut(s)	654
Tru1I	TTAA	1 cut(s)	278
Tru9I	TTAA	1 cut(s)	278
TscAI	CASTG	3 cut(s)	343, 928, 1109
TspDTI	ATGAA	9 cut(s)	248, 345, 384, 453, 673, 1039, 1083, 1195, 1208
TspRI	CASTG	3 cut(s)	343, 928, 1109
Tth111I	GACNNNGTC	1 cut(s)	670
Van91I	CCANNNNNTGG	2 cut(s)	800, 1010
VpaK11BI	GGWCC	7 cut(s)	102, 210, 319, 460, 666, 711, 826
XapI	RAATTY	3 cut(s)	273, 976, 1215
XmiI	GTMKAC	1 cut(s)	785
XspI	CTAG	2 cut(s)	488, 737
ZrmI	AGTACT	1 cut(s)	775
Zsp2I	ATGCAT	1 cut(s)	748

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.