Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0013919

Physical Location & Seq

Genomic Coordinates Forward (+)

36691814 .. 36692815

Gene Structure 1002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00357140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGAAAATAGGGCGTGTGAAGCTCTATGATGCCAACCCGGAAATTTTAAGACTCCTATCCGGAACCAATATCTCAGTCTCCATCATGGTCCCAAACAATGAAATCACTGGCATTGCCTCAGACCAATCCAAAGCAGATGAATGGGTCAGAAACAATGTCCTCCCCTACTACCCCAAAACCATGATCCGGTACCTCCTCGTAGGCAATGAAATCCTCAGCTATTTCTCGGACCAAGATCGCCAAATATGGCACGATCTAGTCCCGGCCATGACTAAAATCAAGTACTCTCTCAAAGCCAAAAATATCACTAACATCAAAATAGGTACCCCATTAGCAATGGACGTGGTTCAAACGAGTTTCCCACCATCAAGTGGCTCTTTCCGATCTGATATCTCGGAAACAGTCATGGTTCCCTTGCTCAGATTCTTGAACCGGACCAAGTCATTTTTCTTCATTGATGTGTACCCTTTTTTCCCATGGTCCTCAAACCCAAAAGACATTAGCCTAGACTATGCATTATTGAAAAACATTAGTAACAACAGTACTCTACAGTATACTGACCCAGGAAGTGGTTTGGTCTATACCAATCTTCTAGACCAAATGCTTGACTCCTTGATCTTCGCCATGACCAAGCTCGGCTACCCAAACATCCGGCTTTTGATAGCGGAGACTGGGTGGCCAAACTCCAGCGGTGAGCAAAACCAACCGGGGGCTAATGTACACAATGCCGCCACATATAACCGAAATTTGGTACAAAAAATTGTTACTAAGCCAACAATCGGGACACCAGCGAGGCCTGGTGTGGTGATACCAACCTTCATATTTGCATTGTATGATGAAAATCAGAAGGGTGGGCCTGGAACAGAGAGGCACTGGGGATTGTTGTACGCTGATGGAACTCCGGTTTATGATATTGACTTGACGGGGAAGCGATCGGCAAATTACTACGAACCATTGCCGGAGAAGAGACACTTCATAAAGGGAATTCATTACGACGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001871 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0022414 GO:0022607 GO:0030198 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

333

Amino Acids

37.53

Weight (kDa)

8.46

Isoelectric Point (pI)

40.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	2 - 306	3.8e-88	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23770 AT4G14080
fragaria_vesca	FvH4_4g13120
malus_domestica	MD04G1019000.v1.1
prunus_persica	Prupe.1G168300_v2.0.a1
pyrus_communis	pycom04g01520
rosa_chinensis	RchiOBHm_Chr4g0412901
rosa_laevigata	RLG00000008249
rosa_multiflora	Rmu_sc0005621.1_g000022 Rmu_sc0012279.1_g000004
rosa_roxburghii	Rroxscaffold_5G00357140
rosa_rugosa	Rorug04G0117400
rosa_samantha	Rh4AG176300 Rh4BG176700 Rh4CG187300 Rh4DG173600
rosa_wichuraiana	Rw4G014800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	189, 323
AccB1I	GGYRCC	2 cut(s)	189, 323
AccB7I	CCANNNNNTGG	2 cut(s)	371, 569
AccI	GTMKAC	1 cut(s)	554
AccIII	TCCGGA	1 cut(s)	59
AciI	CCGC	3 cut(s)	665, 690, 729
AclWI	GGATC	1 cut(s)	178
AcoI	YGGCCR	2 cut(s)	264, 677
AcsI	RAATTY	3 cut(s)	42, 745, 984
AfaI	GTAC	8 cut(s)	191, 284, 325, 464, 544, 720, 753, 887
AfiI	CCNNNNNNNGG	6 cut(s)	186, 371, 569, 709, 748, 779
AgsI	TTSAA	3 cut(s)	350, 430, 523
AjiI	CACGTC	1 cut(s)	343
AjnI	CCWGG	3 cut(s)	562, 796, 856
AjuI	GAANNNNNNNTTGG	2 cut(s)	431, 463
AluBI	AGCT	3 cut(s)	22, 219, 634
AluI	AGCT	3 cut(s)	22, 219, 634
Alw26I	GTCTC	3 cut(s)	82, 662, 961
AlwI	GGATC	1 cut(s)	178
Aor13HI	TCCGGA	1 cut(s)	59
AoxI	GGCC	4 cut(s)	264, 677, 794, 854
ApoI	RAATTY	3 cut(s)	42, 745, 984
Asp718I	GGTACC	2 cut(s)	189, 323
AspS9I	GGNCC	5 cut(s)	88, 229, 435, 480, 854
AsuC2I	CCSGG	3 cut(s)	38, 263, 708
AsuHPI	GGTGA	2 cut(s)	704, 817
AvaII	GGWCC	4 cut(s)	88, 229, 435, 480
BalI	TGGCCA	1 cut(s)	679
BanI	GGYRCC	2 cut(s)	189, 323
BbvCI	CCTCAGC	1 cut(s)	215
BccI	CCATC	3 cut(s)	89, 373, 887
BciT130I	CCWGG	3 cut(s)	564, 798, 858
BcnI	CCSGG	3 cut(s)	38, 263, 708
BcoDI	GTCTC	3 cut(s)	82, 662, 961
BfaI	CTAG	3 cut(s)	257, 506, 593
BfmI	CTRYAG	1 cut(s)	548
BisI	GCNGC	1 cut(s)	729
BlsI	GCNGC	1 cut(s)	730
BmcAI	AGTACT	2 cut(s)	284, 544
Bme1390I	CCNGG	6 cut(s)	38, 263, 564, 708, 798, 858
Bme18I	GGWCC	4 cut(s)	88, 229, 435, 480
BmgBI	CACGTC	1 cut(s)	343
BmgT120I	GGNCC	5 cut(s)	88, 229, 435, 480, 854
BmiI	GGNNCC	5 cut(s)	64, 90, 191, 325, 411
BmrFI	CCNGG	6 cut(s)	38, 263, 564, 708, 798, 858
BmrI	ACTGGG	2 cut(s)	681, 883
BmsI	GCATC	1 cut(s)	19
BmuI	ACTGGG	2 cut(s)	681, 883
BpmI	CTGGAG	1 cut(s)	670
Bpu10I	CCTNAGC	1 cut(s)	215
BpuMI	CCSGG	3 cut(s)	38, 263, 708
BsaBI	GATNNNNATC	1 cut(s)	840
BsaJI	CCNNGG	3 cut(s)	476, 562, 707
BsaWI	WCCGGW	4 cut(s)	59, 186, 432, 901
BsaXI	ACNNNNNCTCC	2 cut(s)	659, 689
Bsc4I	CCNNNNNNNGG	6 cut(s)	186, 371, 569, 709, 748, 779
Bse1I	ACTGG	3 cut(s)	112, 676, 878
Bse3DI	GCAATG	4 cut(s)	111, 211, 342, 953
Bse8I	GATNNNNATC	1 cut(s)	840
BseAI	TCCGGA	1 cut(s)	59
BseBI	CCWGG	3 cut(s)	564, 798, 858
BseDI	CCNNGG	3 cut(s)	476, 562, 707
BseGI	GGATG	1 cut(s)	648
BseJI	GATNNNNATC	1 cut(s)	840
BseLI	CCNNNNNNNGG	6 cut(s)	186, 371, 569, 709, 748, 779
BseMI	GCAATG	4 cut(s)	111, 211, 342, 953
BseMII	CTCAG	4 cut(s)	87, 132, 229, 433
BseNI	ACTGG	3 cut(s)	112, 676, 878
BseRI	GAGGAG	1 cut(s)	185
Bsh1285I	CGRYCG	1 cut(s)	935
BshFI	GGCC	4 cut(s)	266, 679, 796, 856
BshNI	GGYRCC	2 cut(s)	189, 323
BsiEI	CGRYCG	1 cut(s)	935
BsiSI	CCGG	9 cut(s)	38, 60, 187, 263, 433, 652, 707, 902, 959
BslFI	GGGAC	3 cut(s)	74, 245, 796
BslI	CCNNNNNNNGG	6 cut(s)	186, 371, 569, 709, 748, 779
BsmAI	GTCTC	3 cut(s)	82, 662, 961
BsmFI	GGGAC	3 cut(s)	74, 245, 796
BsnI	GGCC	4 cut(s)	266, 679, 796, 856
Bsp13I	TCCGGA	1 cut(s)	59
Bsp1407I	TGTACA	1 cut(s)	718
Bsp143I	GATC	6 cut(s)	183, 235, 253, 383, 615, 932
Bsp19I	CCATGG	1 cut(s)	476
BspACI	CCGC	3 cut(s)	665, 690, 729
BspANI	GGCC	4 cut(s)	266, 679, 796, 856
BspCNI	CTCAG	4 cut(s)	86, 131, 228, 432
BspEI	TCCGGA	1 cut(s)	59
BspLI	GGNNCC	5 cut(s)	64, 90, 191, 325, 411
BspPI	GGATC	1 cut(s)	178
BspT107I	GGYRCC	2 cut(s)	189, 323
BsrDI	GCAATG	4 cut(s)	111, 211, 342, 953
BsrGI	TGTACA	1 cut(s)	718
BsrI	ACTGG	3 cut(s)	112, 676, 878
BssECI	CCNNGG	3 cut(s)	476, 562, 707
BssMI	GATC	6 cut(s)	183, 235, 253, 383, 615, 932
BssNAI	GTATAC	1 cut(s)	555
BssT1I	CCWWGG	1 cut(s)	476
Bst1107I	GTATAC	1 cut(s)	555
Bst2UI	CCWGG	3 cut(s)	564, 798, 858
Bst4CI	ACNGT	3 cut(s)	403, 542, 552
Bst6I	CTCTTC	1 cut(s)	959
BstAUI	TGTACA	1 cut(s)	718
BstDEI	CTNAG	5 cut(s)	73, 118, 215, 419, 768
BstDSI	CCRYGG	1 cut(s)	476
BstF5I	GGATG	1 cut(s)	648
BstKTI	GATC	6 cut(s)	186, 238, 256, 386, 618, 935
BstMAI	GTCTC	3 cut(s)	82, 662, 961
BstMBI	GATC	6 cut(s)	183, 235, 253, 383, 615, 932
BstMCI	CGRYCG	1 cut(s)	935
BstMWI	GCNNNNNNNGC	1 cut(s)	19
BstNI	CCWGG	3 cut(s)	564, 798, 858
BstSCI	CCNGG	6 cut(s)	36, 261, 562, 706, 796, 856
BstSFI	CTRYAG	1 cut(s)	548
BstZ17I	GTATAC	1 cut(s)	555
BsuRI	GGCC	4 cut(s)	266, 679, 796, 856
BtgI	CCRYGG	1 cut(s)	476
BtrI	CACGTC	1 cut(s)	343
BtsCI	GGATG	1 cut(s)	648
BtsIMutI	CAGTG	2 cut(s)	105, 871
Cfr13I	GGNCC	5 cut(s)	88, 229, 435, 480, 854
Csp6I	GTAC	8 cut(s)	190, 283, 324, 463, 543, 719, 752, 886
CspCI	CAANNNNNGTGG	2 cut(s)	324, 359
CviAII	CATG	6 cut(s)	85, 181, 268, 406, 477, 625
CviQI	GTAC	8 cut(s)	190, 283, 324, 463, 543, 719, 752, 886
DdeI	CTNAG	5 cut(s)	73, 118, 215, 419, 768
DpnI	GATC	6 cut(s)	185, 237, 255, 385, 617, 934
DpnII	GATC	6 cut(s)	183, 235, 253, 383, 615, 932
EaeI	YGGCCR	2 cut(s)	264, 677
Eam1104I	CTCTTC	1 cut(s)	959
EarI	CTCTTC	1 cut(s)	959
Eco130I	CCWWGG	1 cut(s)	476
Eco147I	AGGCCT	1 cut(s)	796
Eco32I	GATATC	1 cut(s)	391
Eco47I	GGWCC	4 cut(s)	88, 229, 435, 480
EcoRI	GAATTC	1 cut(s)	984
EcoRII	CCWGG	3 cut(s)	562, 796, 856
EcoRV	GATATC	1 cut(s)	391
EcoT14I	CCWWGG	1 cut(s)	476
EcoT22I	ATGCAT	1 cut(s)	517
ErhI	CCWWGG	1 cut(s)	476
FaeI	CATG	6 cut(s)	88, 184, 271, 409, 480, 628
FalI	AAGNNNNNCTT	4 cut(s)	361, 393, 956, 988
FaqI	GGGAC	3 cut(s)	74, 245, 796
FatI	CATG	6 cut(s)	84, 180, 267, 405, 476, 624
FblI	GTMKAC	1 cut(s)	554
Fnu4HI	GCNGC	1 cut(s)	729
FokI	GGATG	1 cut(s)	635
Fsp4HI	GCNGC	1 cut(s)	729
FspBI	CTAG	3 cut(s)	257, 506, 593
GluI	GCNGC	1 cut(s)	729
GsuI	CTGGAG	1 cut(s)	670
HaeIII	GGCC	4 cut(s)	266, 679, 796, 856
HapII	CCGG	9 cut(s)	38, 60, 187, 263, 433, 652, 707, 902, 959
Hin1II	CATG	6 cut(s)	88, 184, 271, 409, 480, 628
HinfI	GANTC	3 cut(s)	51, 423, 608
HpaII	CCGG	9 cut(s)	38, 60, 187, 263, 433, 652, 707, 902, 959
HphI	GGTGA	2 cut(s)	704, 817
Hpy166II	GTNNAC	3 cut(s)	463, 555, 721
Hpy188I	TCNGA	8 cut(s)	121, 149, 229, 383, 388, 397, 422, 846
Hpy188III	TCNNGA	4 cut(s)	60, 427, 593, 781
Hpy8I	GTNNAC	3 cut(s)	463, 555, 721
Hpy99I	CGWCG	1 cut(s)	998
HpyAV	CCTTC	2 cut(s)	826, 841
HpyCH4III	ACNGT	3 cut(s)	403, 542, 552
HpyCH4IV	ACGT	1 cut(s)	342
HpyCH4V	TGCA	2 cut(s)	515, 827
HpyF10VI	GCNNNNNNNGC	1 cut(s)	19
HpyF3I	CTNAG	5 cut(s)	73, 118, 215, 419, 768
HpySE526I	ACGT	1 cut(s)	342
Hsp92II	CATG	6 cut(s)	88, 184, 271, 409, 480, 628
Kpn2I	TCCGGA	1 cut(s)	59
KpnI	GGTACC	2 cut(s)	193, 327
Kzo9I	GATC	6 cut(s)	183, 235, 253, 383, 615, 932
LweI	GCATC	1 cut(s)	19
MaeI	CTAG	3 cut(s)	257, 506, 593
MaeII	ACGT	1 cut(s)	342
MaeIII	GTNAC	2 cut(s)	533, 763
MalI	GATC	6 cut(s)	185, 237, 255, 385, 617, 934
MboI	GATC	6 cut(s)	183, 235, 253, 383, 615, 932
MboII	GAAGA	4 cut(s)	442, 581, 610, 976
MlsI	TGGCCA	1 cut(s)	679
MluCI	AATT	5 cut(s)	42, 745, 759, 940, 984
MluNI	TGGCCA	1 cut(s)	679
MlyI	GAGTC	2 cut(s)	45, 602
MnlI	CCTC	8 cut(s)	127, 170, 203, 206, 224, 493, 786, 861
Mox20I	TGGCCA	1 cut(s)	679
Mph1103I	ATGCAT	1 cut(s)	517
MroI	TCCGGA	1 cut(s)	59
MscI	TGGCCA	1 cut(s)	679
MseI	TTAA	1 cut(s)	47
MslI	CAYNNNNRTG	1 cut(s)	458
Msp20I	TGGCCA	1 cut(s)	679
MspA1I	CMGCKG	1 cut(s)	690
MspI	CCGG	9 cut(s)	38, 60, 187, 263, 433, 652, 707, 902, 959
MspR9I	CCNGG	6 cut(s)	38, 263, 564, 708, 798, 858
MvaI	CCWGG	3 cut(s)	564, 798, 858
MwoI	GCNNNNNNNGC	1 cut(s)	19
NciI	CCSGG	3 cut(s)	38, 263, 708
NcoI	CCATGG	1 cut(s)	476
NdeII	GATC	6 cut(s)	183, 235, 253, 383, 615, 932
NlaIII	CATG	6 cut(s)	88, 184, 271, 409, 480, 628
NlaIV	GGNNCC	5 cut(s)	64, 90, 191, 325, 411
NmeAIII	GCCGAG	1 cut(s)	615
NsiI	ATGCAT	1 cut(s)	517
PceI	AGGCCT	1 cut(s)	796
PfeI	GAWTC	1 cut(s)	423
PflFI	GACNNNGTC	1 cut(s)	439
PflMI	CCANNNNNTGG	2 cut(s)	371, 569
PkrI	GCNGC	1 cut(s)	730
Ple19I	CGATCG	1 cut(s)	935
PleI	GAGTC	2 cut(s)	45, 602
PpsI	GAGTC	2 cut(s)	45, 602
Psp6I	CCWGG	3 cut(s)	562, 796, 856
PspGI	CCWGG	3 cut(s)	562, 796, 856
PspN4I	GGNNCC	5 cut(s)	64, 90, 191, 325, 411
PspPI	GGNCC	5 cut(s)	88, 229, 435, 480, 854
PsyI	GACNNNGTC	1 cut(s)	439
PvuI	CGATCG	1 cut(s)	935
RsaI	GTAC	8 cut(s)	191, 284, 325, 464, 544, 720, 753, 887
RsaNI	GTAC	8 cut(s)	190, 283, 324, 463, 543, 719, 752, 886
RseI	CAYNNNNRTG	1 cut(s)	458
SaqAI	TTAA	1 cut(s)	47
SatI	GCNGC	1 cut(s)	729
Sau3AI	GATC	6 cut(s)	183, 235, 253, 383, 615, 932
Sau96I	GGNCC	5 cut(s)	88, 229, 435, 480, 854
ScaI	AGTACT	2 cut(s)	284, 544
SchI	GAGTC	2 cut(s)	45, 602
ScrFI	CCNGG	6 cut(s)	38, 263, 564, 708, 798, 858
SetI	ASST	7 cut(s)	24, 195, 221, 325, 345, 636, 818
SfaNI	GCATC	1 cut(s)	19
SfcI	CTRYAG	1 cut(s)	548
SinI	GGWCC	4 cut(s)	88, 229, 435, 480
SmiMI	CAYNNNNRTG	1 cut(s)	458
Sse9I	AATT	5 cut(s)	42, 745, 759, 940, 984
SseBI	AGGCCT	1 cut(s)	796
SsiI	CCGC	3 cut(s)	665, 690, 729
SspMI	CTAG	3 cut(s)	257, 506, 593
StuI	AGGCCT	1 cut(s)	796
StyD4I	CCNGG	6 cut(s)	36, 261, 562, 706, 796, 856
StyI	CCWWGG	1 cut(s)	476
TaaI	ACNGT	3 cut(s)	403, 542, 552
TaiI	ACGT	1 cut(s)	345
TasI	AATT	5 cut(s)	42, 745, 759, 940, 984
TatI	WGTACW	3 cut(s)	282, 542, 718
TauI	GCSGC	1 cut(s)	731
TfiI	GAWTC	1 cut(s)	423
Tru1I	TTAA	1 cut(s)	47
Tru9I	TTAA	1 cut(s)	47
TscAI	CASTG	2 cut(s)	112, 878
TspDTI	ATGAA	9 cut(s)	17, 114, 153, 222, 442, 808, 852, 964, 977
TspRI	CASTG	2 cut(s)	112, 878
Tth111I	GACNNNGTC	1 cut(s)	439
Van91I	CCANNNNNTGG	2 cut(s)	371, 569
VpaK11BI	GGWCC	4 cut(s)	88, 229, 435, 480
XapI	RAATTY	3 cut(s)	42, 745, 984
XbaI	TCTAGA	1 cut(s)	592
XmiI	GTMKAC	1 cut(s)	554
XspI	CTAG	3 cut(s)	257, 506, 593
ZrmI	AGTACT	2 cut(s)	284, 544
Zsp2I	ATGCAT	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.