AT4G14080

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
8118537 .. 8120358
1822 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G14080.1

Sequence Viewer

Length: 1437 bp
ATGTCTCTTCTTGCTTTCTTCCTCTTCACCATCCTTGTCTTTTCAAGTTCATGTTGTTCCGCAACTCGGTTCCAAGGGCACAGGTACATGCAGAGGAAAACAATGCTAGATTTGGCTAGCAAGATTGGTATCAACTATGGAAGAAGAGGAAACAACCTCCCATCTCCATATCAATCCATCAACTTCATCAAATCTATCAAAGCTGGTCATGTCAAGCTCTATGACGCCGATCCAGAGAGTCTCACACTCCTCTCTCAAACCAATCTCTACGTCACCATAACCGTCCCTAACCACCAAATCACCGCCCTCAGCTCTAACCAAACCATAGCTGACGAATGGGTCAGAACTAACATCCTCCCTTACTATCCACAAACACAAATCCGTTTTGTCCTTGTCGGAAACGAAATCCTCAGCTACAATTCTGGGAATGTCTCTGTGAATCTTGTACCGGCGATGCGCAAAATCGTTAACTCACTCAGATTACATGGGATTCACAACATCAAAGTTGGGACACCTCTAGCTATGGATTCTCTCCGGTCGTCGTTTCCTCCATCGAACGGAACATTCCGGGAAGAAATCACCGGACCGGTGATGTTACCGTTGCTGAAGTTTCTCAACGGAACAAACTCTTACTTCTTCCTTAATGTTCATCCTTACTTCCGTTGGTCAAGAAACCCCATGAACACCAGTTTGGATTTTGCTCTGTTCCAAGGACACTCAACCTATACCGATCCTCAAACCGGTTTGGTTTACCGTAATCTTCTAGACCAAATGTTGGATTCGGTTCTCTTCGCCATGACCAAACTCGGTTATCCACATATGCGCCTCGCGATCTCTGAAACCGGATGGCCTAATTTCGGTGACATCGACGAAACCGGAGCCAACATTCTCAACGCAGCTACCTATAACCGTAATCTGATCAAGAAGATGAGCGCAAGTCCTCCAATCGGTACACCATCAAGACCCGGTTTACCAATACCGACATTTGTTTTCTCCTTATTCAACGAAAACCAGAAATCCGGTTCGGGGACACAGAGACATTGGGGAATCTTGCATCCCGACGGTTCACCAATCTACGACGTAGATTTCACCGGTCAAACACCCTTAACCGGTTTCAACCCGTTACCTAAACCGACGAACAACGTTCCTTACAAAGGTCAAGTGTGGTGCGTACCAGTCGAAGGAGCCAACGAGACTGAGCTTGAAGAAACATTGAGGATGGCTTGTGCCCAAAGCAACACCACTTGTGCAGCTTTAGCTCCTGGGAGAGAATGTTACGAACCAGTCTCCATTTATTGGCATGCAAGCTACGCGCTTAATTCGTACTGGGCTCAGTTTCGTAACCAAAGCATTCAATGTTTCTTCAATGGATTGGCTCATGAGACAACAACCAACCCTGGAAATGATCGTTGCAAGTTTCCGAGCGTTACTCTGTGA

Protein Analysis

478

Amino Acids

53.47

Weight (kDa)

8.78

Isoelectric Point (pI)

37.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 42 - 363 6.6e-127 Glycosyl hydrolases family 17
X8 PF07983 389 - 459 1.9e-15 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013919)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23770 AT4G14080
fragaria_vesca FvH4_4g13120
malus_domestica MD04G1019000.v1.1
prunus_persica Prupe.1G168300_v2.0.a1
pyrus_communis pycom04g01520
rosa_chinensis RchiOBHm_Chr4g0412901
rosa_laevigata RLG00000008249
rosa_multiflora Rmu_sc0005621.1_g000022 Rmu_sc0012279.1_g000004
rosa_roxburghii Rroxscaffold_5G00357140
rosa_rugosa Rorug04G0117400
rosa_samantha Rh4AG176300 Rh4BG176700 Rh4CG187300 Rh4DG173600
rosa_wichuraiana Rw4G014800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 338
Acc16I TGCGCA 1 cut(s) 458
AccB7I CCANNNNNTGG 2 cut(s) 775, 1296
AccII CGCG 2 cut(s) 830, 1313
AciI CCGC 2 cut(s) 60, 303
AclI AACGTT 1 cut(s) 1143
AclWI GGATC 2 cut(s) 224, 725
AcuI CTGAAG 1 cut(s) 626
AcyI GRCGYC 1 cut(s) 225
AfaI GTAC 5 cut(s) 86, 447, 952, 1173, 1325
AgeI ACCGGT 4 cut(s) 586, 740, 1091, 1109
AgsI TTSAA 6 cut(s) 45, 1003, 1117, 1205, 1355, 1366
AjnI CCWGG 2 cut(s) 1261, 1396
AjuI GAANNNNNNNTTGG 2 cut(s) 674, 706
Alw26I GTCTC 7 cut(s) 9, 245, 436, 1030, 1187, 1291, 1376
AlwI GGATC 2 cut(s) 224, 725
AoxI GGCC 1 cut(s) 848
ApeKI GCWGC 2 cut(s) 896, 1250
AsiGI ACCGGT 4 cut(s) 586, 740, 1091, 1109
AspLEI GCGC 4 cut(s) 459, 825, 935, 1315
AspS9I GGNCC 1 cut(s) 584
AsuC2I CCSGG 2 cut(s) 569, 966
AsuHPI GGTGA 8 cut(s) 19, 265, 292, 571, 601, 872, 1059, 1081
AsuNHI GCTAGC 1 cut(s) 116
AvaII GGWCC 1 cut(s) 584
BaeGI GKGCMC 2 cut(s) 81, 1231
BanII GRGCYC 1 cut(s) 1333
BbvCI CCTCAGC 2 cut(s) 308, 410
BbvI GCAGC 2 cut(s) 908, 1262
BccI CCATC 7 cut(s) 38, 169, 185, 559, 840, 964, 1213
BciT130I CCWGG 2 cut(s) 1263, 1398
BclI TGATCA 1 cut(s) 918
BcnI CCSGG 2 cut(s) 569, 966
BcoDI GTCTC 7 cut(s) 9, 245, 436, 1030, 1187, 1291, 1376
BfaI CTAG 4 cut(s) 107, 117, 518, 764
BisI GCNGC 2 cut(s) 897, 1251
BlsI GCNGC 2 cut(s) 898, 1252
Bme1390I CCNGG 4 cut(s) 569, 966, 1263, 1398
Bme18I GGWCC 1 cut(s) 584
BmgT120I GGNCC 1 cut(s) 584
BmiI GGNNCC 3 cut(s) 71, 880, 1186
BmrFI CCNGG 4 cut(s) 569, 966, 1263, 1398
BmrI ACTGGG 1 cut(s) 1336
BmsI GCATC 2 cut(s) 444, 1063
BmtI GCTAGC 1 cut(s) 120
BmuI ACTGGG 1 cut(s) 1336
BplI GAGNNNNNCTC 1 cut(s) 1414
Bpu10I CCTNAGC 2 cut(s) 308, 410
BpuMI CCSGG 2 cut(s) 569, 966
BsaBI GATNNNNATC 1 cut(s) 128
BsaHI GRCGYC 1 cut(s) 225
BsaJI CCNNGG 4 cut(s) 73, 709, 1262, 1396
BsaWI WCCGGW 9 cut(s) 534, 581, 586, 740, 842, 875, 1019, 1091, 1109
BsaXI ACNNNNNCTCC 2 cut(s) 1258, 1288
Bse118I RCCGGY 5 cut(s) 448, 586, 740, 1091, 1109
Bse1I ACTGG 4 cut(s) 687, 1175, 1283, 1331
Bse8I GATNNNNATC 1 cut(s) 128
BseBI CCWGG 2 cut(s) 1263, 1398
BseDI CCNNGG 4 cut(s) 73, 709, 1262, 1396
BseGI GGATG 6 cut(s) 30, 351, 649, 851, 1054, 1224
BseJI GATNNNNATC 1 cut(s) 128
BseMII CTCAG 5 cut(s) 322, 424, 490, 1188, 1346
BseNI ACTGG 4 cut(s) 687, 1175, 1283, 1331
BseRI GAGGAG 1 cut(s) 239
BseSI GKGCMC 2 cut(s) 81, 1231
BseXI GCAGC 2 cut(s) 908, 1262
BsgI GTGCAG 1 cut(s) 1269
Bsh1236I CGCG 2 cut(s) 830, 1313
Bsh1285I CGRYCG 1 cut(s) 539
BshFI GGCC 1 cut(s) 850
BshTI ACCGGT 4 cut(s) 586, 740, 1091, 1109
BsiEI CGRYCG 1 cut(s) 539
BslFI GGGAC 3 cut(s) 269, 523, 1042
BsmAI GTCTC 7 cut(s) 9, 245, 436, 1030, 1187, 1291, 1376
BsmFI GGGAC 3 cut(s) 269, 523, 1042
BsmI GAATGC 1 cut(s) 1350
BsnI GGCC 1 cut(s) 850
Bsp1286I GDGCHC 3 cut(s) 81, 1231, 1333
Bsp143I GATC 5 cut(s) 229, 730, 831, 918, 1405
Bsp68I TCGCGA 1 cut(s) 830
BspACI CCGC 2 cut(s) 60, 303
BspANI GGCC 1 cut(s) 850
BspCNI CTCAG 5 cut(s) 321, 423, 489, 1189, 1345
BspFNI CGCG 2 cut(s) 830, 1313
BspHI TCATGA 1 cut(s) 1378
BspLI GGNNCC 3 cut(s) 71, 880, 1186
BspOI GCTAGC 1 cut(s) 120
BspPI GGATC 2 cut(s) 224, 725
BsrFI RCCGGY 5 cut(s) 448, 586, 740, 1091, 1109
BsrI ACTGG 4 cut(s) 687, 1175, 1283, 1331
BssAI RCCGGY 5 cut(s) 448, 586, 740, 1091, 1109
BssECI CCNNGG 4 cut(s) 73, 709, 1262, 1396
BssMI GATC 5 cut(s) 229, 730, 831, 918, 1405
BssNI GRCGYC 1 cut(s) 225
BssT1I CCWWGG 2 cut(s) 73, 709
Bst2UI CCWGG 2 cut(s) 1263, 1398
Bst4CI ACNGT 5 cut(s) 283, 600, 755, 911, 1064
Bst6I CTCTTC 4 cut(s) 12, 29, 139, 794
BstACI GRCGYC 1 cut(s) 225
BstC8I GCNNGC 3 cut(s) 118, 1302, 1306
BstDEI CTNAG 5 cut(s) 308, 410, 476, 1197, 1332
BstENI CCTNNNNNAGG 1 cut(s) 1152
BstF5I GGATG 6 cut(s) 30, 351, 649, 851, 1054, 1224
BstFNI CGCG 2 cut(s) 830, 1313
BstHHI GCGC 4 cut(s) 459, 825, 935, 1315
BstKTI GATC 5 cut(s) 232, 733, 834, 921, 1408
BstMAI GTCTC 7 cut(s) 9, 245, 436, 1030, 1187, 1291, 1376
BstMBI GATC 5 cut(s) 229, 730, 831, 918, 1405
BstMCI CGRYCG 1 cut(s) 539
BstMWI GCNNNNNNNGC 2 cut(s) 1256, 1310
BstNI CCWGG 2 cut(s) 1263, 1398
BstNSI RCATGY 2 cut(s) 91, 1304
BstSCI CCNGG 4 cut(s) 567, 964, 1261, 1396
BstSLI GKGCMC 2 cut(s) 81, 1231
BstUI CGCG 2 cut(s) 830, 1313
BstV1I GCAGC 2 cut(s) 908, 1262
BsuRI GGCC 1 cut(s) 850
BtgZI GCGATG 1 cut(s) 467
BtsCI GGATG 6 cut(s) 30, 351, 649, 851, 1054, 1224
BtuMI TCGCGA 1 cut(s) 830
Cac8I GCNNGC 3 cut(s) 118, 1302, 1306
CciI TCATGA 1 cut(s) 1378
CfoI GCGC 4 cut(s) 459, 825, 935, 1315
Cfr10I RCCGGY 5 cut(s) 448, 586, 740, 1091, 1109
Cfr13I GGNCC 1 cut(s) 584
CpoI CGGWCCG 1 cut(s) 584
CseI GACGC 1 cut(s) 233
Csp6I GTAC 5 cut(s) 85, 446, 951, 1172, 1324
CspAI ACCGGT 4 cut(s) 586, 740, 1091, 1109
CspI CGGWCCG 1 cut(s) 584
CviAII CATG 8 cut(s) 51, 88, 209, 485, 679, 796, 1301, 1379
CviQI GTAC 5 cut(s) 85, 446, 951, 1172, 1324
DdeI CTNAG 5 cut(s) 308, 410, 476, 1197, 1332
DpnI GATC 5 cut(s) 231, 732, 833, 920, 1407
DpnII GATC 5 cut(s) 229, 730, 831, 918, 1405
DrdI GACNNNNNNGTC 1 cut(s) 338
DseDI GACNNNNNNGTC 1 cut(s) 338
Eam1104I CTCTTC 4 cut(s) 12, 29, 139, 794
EarI CTCTTC 4 cut(s) 12, 29, 139, 794
Eco130I CCWWGG 2 cut(s) 73, 709
Eco24I GRGCYC 1 cut(s) 1333
Eco47I GGWCC 1 cut(s) 584
Eco57I CTGAAG 1 cut(s) 626
EcoNI CCTNNNNNAGG 1 cut(s) 1152
EcoRII CCWGG 2 cut(s) 1261, 1396
EcoT14I CCWWGG 2 cut(s) 73, 709
EcoT38I GRGCYC 1 cut(s) 1333
ErhI CCWWGG 2 cut(s) 73, 709
FaeI CATG 8 cut(s) 54, 91, 212, 488, 682, 799, 1304, 1382
FaqI GGGAC 3 cut(s) 269, 523, 1042
FatI CATG 8 cut(s) 50, 87, 208, 484, 678, 795, 1300, 1378
FauNDI CATATG 1 cut(s) 819
FbaI TGATCA 1 cut(s) 918
Fnu4HI GCNGC 2 cut(s) 897, 1251
FokI GGATG 6 cut(s) 17, 338, 636, 858, 1041, 1231
FriOI GRGCYC 1 cut(s) 1333
Fsp4HI GCNGC 2 cut(s) 897, 1251
FspBI CTAG 4 cut(s) 107, 117, 518, 764
FspI TGCGCA 1 cut(s) 458
GlaI GCGC 4 cut(s) 458, 824, 934, 1314
GluI GCNGC 2 cut(s) 897, 1251
HaeIII GGCC 1 cut(s) 850
HgaI GACGC 1 cut(s) 233
HhaI GCGC 4 cut(s) 459, 825, 935, 1315
Hin1I GRCGYC 1 cut(s) 225
Hin1II CATG 8 cut(s) 54, 91, 212, 488, 682, 799, 1304, 1382
Hin6I GCGC 4 cut(s) 457, 823, 933, 1313
HinP1I GCGC 4 cut(s) 457, 823, 933, 1313
HincII GTYRAC 1 cut(s) 469
HindII GTYRAC 1 cut(s) 469
HinfI GANTC 6 cut(s) 238, 439, 490, 527, 779, 1047
HpaI GTTAAC 1 cut(s) 469
HphI GGTGA 8 cut(s) 19, 265, 292, 571, 601, 872, 1059, 1081
Hpy166II GTNNAC 5 cut(s) 469, 751, 953, 971, 1067
Hpy188I TCNGA 6 cut(s) 344, 398, 479, 838, 918, 1422
Hpy188III TCNNGA 8 cut(s) 233, 669, 764, 829, 922, 960, 1058, 1379
Hpy8I GTNNAC 5 cut(s) 469, 751, 953, 971, 1067
Hpy99I CGWCG 5 cut(s) 544, 872, 1064, 1082, 1138
HpyAV CCTTC 1 cut(s) 1175
HpyCH4III ACNGT 5 cut(s) 283, 600, 755, 911, 1064
HpyCH4IV ACGT 3 cut(s) 270, 1080, 1143
HpyCH4V TGCA 5 cut(s) 91, 1054, 1250, 1304, 1413
HpyF10VI GCNNNNNNNGC 2 cut(s) 1256, 1310
HpyF3I CTNAG 5 cut(s) 308, 410, 476, 1197, 1332
HpySE526I ACGT 3 cut(s) 270, 1080, 1143
Hsp92I GRCGYC 1 cut(s) 225
Hsp92II CATG 8 cut(s) 54, 91, 212, 488, 682, 799, 1304, 1382
HspAI GCGC 4 cut(s) 457, 823, 933, 1313
Ksp22I TGATCA 1 cut(s) 918
KspAI GTTAAC 1 cut(s) 469
Kzo9I GATC 5 cut(s) 229, 730, 831, 918, 1405
LmnI GCTCC 3 cut(s) 878, 1184, 1264
Lsp1109I GCAGC 2 cut(s) 908, 1262
LweI GCATC 2 cut(s) 444, 1063
MaeI CTAG 4 cut(s) 107, 117, 518, 764
MaeII ACGT 3 cut(s) 270, 1080, 1143
MaeIII GTNAC 7 cut(s) 271, 594, 860, 1122, 1274, 1340, 1426
MalI GATC 5 cut(s) 231, 732, 833, 920, 1407
MboI GATC 5 cut(s) 229, 730, 831, 918, 1405
MhlI GDGCHC 3 cut(s) 81, 1231, 1333
MluCI AATT 3 cut(s) 418, 853, 1318
MlyI GAGTC 1 cut(s) 247
MmeI TCCRAC 2 cut(s) 376, 756
MseI TTAA 4 cut(s) 468, 642, 1106, 1317
MspR9I CCNGG 4 cut(s) 569, 966, 1263, 1398
Mva1269I GAATGC 1 cut(s) 1350
MvaI CCWGG 2 cut(s) 1263, 1398
MvnI CGCG 2 cut(s) 830, 1313
MwoI GCNNNNNNNGC 2 cut(s) 1256, 1310
NciI CCSGG 2 cut(s) 569, 966
NdeI CATATG 1 cut(s) 819
NdeII GATC 5 cut(s) 229, 730, 831, 918, 1405
NheI GCTAGC 1 cut(s) 116
NlaIII CATG 8 cut(s) 54, 91, 212, 488, 682, 799, 1304, 1382
NlaIV GGNNCC 3 cut(s) 71, 880, 1186
NmuCI GTSAC 2 cut(s) 271, 860
NruI TCGCGA 1 cut(s) 830
NsbI TGCGCA 1 cut(s) 458
NspI RCATGY 2 cut(s) 91, 1304
PaeI GCATGC 1 cut(s) 1304
PagI TCATGA 1 cut(s) 1378
PcsI WCGNNNNNNNCGW 1 cut(s) 864
PctI GAATGC 1 cut(s) 1350
PfeI GAWTC 5 cut(s) 439, 490, 527, 779, 1047
PflMI CCANNNNNTGG 2 cut(s) 775, 1296
PfoI TCCNGGA 1 cut(s) 567
PinAI ACCGGT 4 cut(s) 586, 740, 1091, 1109
PkrI GCNGC 2 cut(s) 898, 1252
PleI GAGTC 1 cut(s) 246
PpsI GAGTC 1 cut(s) 246
Psp1406I AACGTT 1 cut(s) 1143
Psp6I CCWGG 2 cut(s) 1261, 1396
PspGI CCWGG 2 cut(s) 1261, 1396
PspN4I GGNNCC 3 cut(s) 71, 880, 1186
PspPI GGNCC 1 cut(s) 584
RruI TCGCGA 1 cut(s) 830
RsaI GTAC 5 cut(s) 86, 447, 952, 1173, 1325
RsaNI GTAC 5 cut(s) 85, 446, 951, 1172, 1324
Rsr2I CGGWCCG 1 cut(s) 584
RsrII CGGWCCG 1 cut(s) 584
SaqAI TTAA 4 cut(s) 468, 642, 1106, 1317
SatI GCNGC 2 cut(s) 897, 1251
Sau3AI GATC 5 cut(s) 229, 730, 831, 918, 1405
Sau96I GGNCC 1 cut(s) 584
SchI GAGTC 1 cut(s) 247
ScrFI CCNGG 4 cut(s) 569, 966, 1263, 1398
SduI GDGCHC 3 cut(s) 81, 1231, 1333
SfaNI GCATC 2 cut(s) 444, 1063
SinI GGWCC 1 cut(s) 584
SphI GCATGC 1 cut(s) 1304
Sse9I AATT 3 cut(s) 418, 853, 1318
SsiI CCGC 2 cut(s) 60, 303
SspMI CTAG 4 cut(s) 107, 117, 518, 764
StyD4I CCNGG 4 cut(s) 567, 964, 1261, 1396
StyI CCWWGG 2 cut(s) 73, 709
TaaI ACNGT 5 cut(s) 283, 600, 755, 911, 1064
TaiI ACGT 3 cut(s) 273, 1083, 1146
TaqI TCGA 3 cut(s) 554, 867, 1179
TasI AATT 3 cut(s) 418, 853, 1318
TfiI GAWTC 5 cut(s) 439, 490, 527, 779, 1047
Tru1I TTAA 4 cut(s) 468, 642, 1106, 1317
Tru9I TTAA 4 cut(s) 468, 642, 1106, 1317
TseFI GTSAC 2 cut(s) 271, 860
TseI GCWGC 2 cut(s) 896, 1250
Tsp45I GTSAC 2 cut(s) 271, 860
TspDTI ATGAA 4 cut(s) 39, 175, 638, 695
TspGWI ACGGA 4 cut(s) 371, 573, 633, 650
Van91I CCANNNNNTGG 2 cut(s) 775, 1296
VpaK11BI GGWCC 1 cut(s) 584
XagI CCTNNNNNAGG 1 cut(s) 1152
XbaI TCTAGA 1 cut(s) 763
XceI RCATGY 2 cut(s) 91, 1304
XspI CTAG 4 cut(s) 107, 117, 518, 764
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.