Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0013919

Physical Location & Seq

Genomic Coordinates Forward (+)

34271430 .. 34272838

Gene Structure 1409 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G014800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGCACCTTTGGCTTTCCTTCTGCTATTCCATCTCCTTGGTTTTTCAGTTGCTGAGATTTCGAGCAAAATTGGCATAAACTATGGGCAGGTAGGGAACAATTTGCCATCTCCAAGCCGGTCCATCGAGCACATCAAATCCATGAAAATAGGGCGTGTGAAGCTCTATGATGCCAACCCGGACATTTTAAGACTCCTATCTGGAACCAATATCTCAGTCTCCATCATGGTCCCAAACAATGAAATCACTGGCATTGCCTCAGACCAATCCAAAGCAGATGAATGGGTCAGAAACAATGTCCTCCCCTACTACCCCAAAACCATGATCCGGTACCTCCTCGTAGGCAATGAAATCCTCAGCTATTTCTCGGACCAAGATCGCCAAATATGGCACGATCTAGTCCCGGCCATGACTAAAATAAAGTATTCTCTCAAATCCAAAAATATCACTAACATCAAAATAGGTACCCCATTAGCAATGGACGTGGTTCAAACGAGTTTCCCACCATCAAGTGGCTCTTTCCGATCCGATATCTCGGAAACAGTCATGGTTCCCTTGCTCAGATTCTTGAACCGGACCAAGTCATTTTTCTTCATTGATGTGTACCCTTTTTTCCCATGGTCCTCAAACCCCAAAGACATTAGCCTAGACTATGCATTATTGAAAAACATTAGTAACAACATTACTCTACTGTATACTGACCCAGGAAGTGGTTTGGTCTATACCAATCTTCTGGACCAAATGCTTGACTCCTTGATCTTCGCCATGACCAAGCTCGGCTACCCAAACATCCGGCTTTTGATAGCGGAGACTGGGTGGCCAAACTCCAGCAGTGAGCAAAACCAACCGGGGGCTAATGTACACGATGCCGCCACATATAACCGAAATTTGGTACAAAAAATTGTTACTAAGCCAACAATTGGGACACCAGCGAGGCCTGGTGTGGTGATACCAACCTTCATATTTGCATTGTATGATGAAAATCAGAAGGGTGGGCCTGGAACAGAGAGGCACTGGGGATTGTTGTACGCTGATGGAACTCCGGTTTATGATATTGACTTGACGGGGAAGCGATCGGCAAATGACTACGAACCATTGCCGGAGAAGAGGCACTTCATAAAGGGAATTCATTACGACGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001871 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0022414 GO:0022607 GO:0030198 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

380

Amino Acids

42.57

Weight (kDa)

7.81

Isoelectric Point (pI)

43.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	24 - 353	2.1e-98	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23770 AT4G14080
fragaria_vesca	FvH4_4g13120
malus_domestica	MD04G1019000.v1.1
prunus_persica	Prupe.1G168300_v2.0.a1
pyrus_communis	pycom04g01520
rosa_chinensis	RchiOBHm_Chr4g0412901
rosa_laevigata	RLG00000008249
rosa_multiflora	Rmu_sc0005621.1_g000022 Rmu_sc0012279.1_g000004
rosa_roxburghii	Rroxscaffold_5G00357140
rosa_rugosa	Rorug04G0117400
rosa_samantha	Rh4AG176300 Rh4BG176700 Rh4CG187300 Rh4DG173600
rosa_wichuraiana	Rw4G014800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	79
Acc65I	GGTACC	2 cut(s)	330, 464
AccB1I	GGYRCC	3 cut(s)	4, 330, 464
AccB7I	CCANNNNNTGG	3 cut(s)	512, 710, 920
AccI	GTMKAC	1 cut(s)	695
AciI	CCGC	2 cut(s)	806, 870
AclWI	GGATC	2 cut(s)	319, 519
AcoI	YGGCCR	2 cut(s)	405, 818
AcsI	RAATTY	2 cut(s)	886, 1125
AfaI	GTAC	6 cut(s)	332, 466, 605, 861, 894, 1028
AfiI	CCNNNNNNNGG	6 cut(s)	327, 512, 710, 850, 889, 920
AgsI	TTSAA	3 cut(s)	491, 571, 664
AjiI	CACGTC	1 cut(s)	484
AjnI	CCWGG	3 cut(s)	703, 937, 997
AjuI	GAANNNNNNNTTGG	2 cut(s)	572, 604
AluBI	AGCT	3 cut(s)	163, 360, 775
AluI	AGCT	3 cut(s)	163, 360, 775
Alw21I	GWGCWC	1 cut(s)	132
Alw26I	GTCTC	2 cut(s)	223, 803
AlwI	GGATC	2 cut(s)	319, 519
AlwNI	CAGNNNCTG	1 cut(s)	53
AoxI	GGCC	4 cut(s)	405, 818, 935, 995
ApoI	RAATTY	2 cut(s)	886, 1125
Asp718I	GGTACC	2 cut(s)	330, 464
AspS9I	GGNCC	7 cut(s)	120, 229, 370, 576, 621, 736, 995
AsuC2I	CCSGG	3 cut(s)	179, 404, 849
AsuHPI	GGTGA	1 cut(s)	958
AvaII	GGWCC	6 cut(s)	120, 229, 370, 576, 621, 736
BalI	TGGCCA	1 cut(s)	820
BanI	GGYRCC	3 cut(s)	4, 330, 464
Bbv12I	GWGCWC	1 cut(s)	132
BbvCI	CCTCAGC	1 cut(s)	356
BccI	CCATC	6 cut(s)	39, 115, 131, 230, 514, 1028
BciT130I	CCWGG	3 cut(s)	705, 939, 999
BcnI	CCSGG	3 cut(s)	179, 404, 849
BcoDI	GTCTC	2 cut(s)	223, 803
BfaI	CTAG	2 cut(s)	398, 647
BfuAI	ACCTGC	1 cut(s)	79
BisI	GCNGC	1 cut(s)	870
BlsI	GCNGC	1 cut(s)	871
Bme1390I	CCNGG	6 cut(s)	179, 404, 705, 849, 939, 999
Bme18I	GGWCC	6 cut(s)	120, 229, 370, 576, 621, 736
BmgBI	CACGTC	1 cut(s)	484
BmgT120I	GGNCC	7 cut(s)	120, 229, 370, 576, 621, 736, 995
BmiI	GGNNCC	6 cut(s)	6, 205, 231, 332, 466, 552
BmrFI	CCNGG	6 cut(s)	179, 404, 705, 849, 939, 999
BmrI	ACTGGG	2 cut(s)	822, 1024
BmsI	GCATC	2 cut(s)	160, 856
BmuI	ACTGGG	2 cut(s)	822, 1024
BpmI	CTGGAG	1 cut(s)	811
Bpu10I	CCTNAGC	1 cut(s)	356
BpuMI	CCSGG	3 cut(s)	179, 404, 849
BsaBI	GATNNNNATC	1 cut(s)	981
BsaJI	CCNNGG	4 cut(s)	37, 617, 703, 848
BsaWI	WCCGGW	3 cut(s)	327, 573, 1042
BsaXI	ACNNNNNCTCC	2 cut(s)	800, 830
Bsc4I	CCNNNNNNNGG	6 cut(s)	327, 512, 710, 850, 889, 920
Bse118I	RCCGGY	1 cut(s)	117
Bse1I	ACTGG	3 cut(s)	253, 817, 1019
Bse3DI	GCAATG	4 cut(s)	252, 352, 483, 1094
Bse8I	GATNNNNATC	1 cut(s)	981
BseBI	CCWGG	3 cut(s)	705, 939, 999
BseDI	CCNNGG	4 cut(s)	37, 617, 703, 848
BseGI	GGATG	1 cut(s)	789
BseJI	GATNNNNATC	1 cut(s)	981
BseLI	CCNNNNNNNGG	6 cut(s)	327, 512, 710, 850, 889, 920
BseMI	GCAATG	4 cut(s)	252, 352, 483, 1094
BseMII	CTCAG	5 cut(s)	45, 228, 273, 370, 574
BseNI	ACTGG	3 cut(s)	253, 817, 1019
BseRI	GAGGAG	1 cut(s)	326
Bsh1285I	CGRYCG	1 cut(s)	1076
BshFI	GGCC	4 cut(s)	407, 820, 937, 997
BshNI	GGYRCC	3 cut(s)	4, 330, 464
BsiEI	CGRYCG	1 cut(s)	1076
BsiHKAI	GWGCWC	1 cut(s)	132
BsiSI	CCGG	9 cut(s)	118, 179, 328, 404, 574, 793, 848, 1043, 1100
BslFI	GGGAC	3 cut(s)	215, 386, 937
BslI	CCNNNNNNNGG	6 cut(s)	327, 512, 710, 850, 889, 920
BsmAI	GTCTC	2 cut(s)	223, 803
BsmFI	GGGAC	3 cut(s)	215, 386, 937
BsnI	GGCC	4 cut(s)	407, 820, 937, 997
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp1407I	TGTACA	1 cut(s)	859
Bsp143I	GATC	6 cut(s)	324, 376, 394, 524, 756, 1073
Bsp19I	CCATGG	1 cut(s)	617
BspACI	CCGC	2 cut(s)	806, 870
BspANI	GGCC	4 cut(s)	407, 820, 937, 997
BspCNI	CTCAG	5 cut(s)	46, 227, 272, 369, 573
BspLI	GGNNCC	6 cut(s)	6, 205, 231, 332, 466, 552
BspMI	ACCTGC	1 cut(s)	79
BspPI	GGATC	2 cut(s)	319, 519
BspT107I	GGYRCC	3 cut(s)	4, 330, 464
BsrDI	GCAATG	4 cut(s)	252, 352, 483, 1094
BsrFI	RCCGGY	1 cut(s)	117
BsrGI	TGTACA	1 cut(s)	859
BsrI	ACTGG	3 cut(s)	253, 817, 1019
BssAI	RCCGGY	1 cut(s)	117
BssECI	CCNNGG	4 cut(s)	37, 617, 703, 848
BssMI	GATC	6 cut(s)	324, 376, 394, 524, 756, 1073
BssNAI	GTATAC	1 cut(s)	696
BssT1I	CCWWGG	2 cut(s)	37, 617
Bst1107I	GTATAC	1 cut(s)	696
Bst2UI	CCWGG	3 cut(s)	705, 939, 999
Bst4CI	ACNGT	2 cut(s)	544, 693
Bst6I	CTCTTC	1 cut(s)	1100
BstAUI	TGTACA	1 cut(s)	859
BstDEI	CTNAG	6 cut(s)	54, 214, 259, 356, 560, 909
BstDSI	CCRYGG	1 cut(s)	617
BstF5I	GGATG	1 cut(s)	789
BstKTI	GATC	6 cut(s)	327, 379, 397, 527, 759, 1076
BstMAI	GTCTC	2 cut(s)	223, 803
BstMBI	GATC	6 cut(s)	324, 376, 394, 524, 756, 1073
BstMCI	CGRYCG	1 cut(s)	1076
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 72, 160
BstNI	CCWGG	3 cut(s)	705, 939, 999
BstSCI	CCNGG	6 cut(s)	177, 402, 703, 847, 937, 997
BstXI	CCANNNNNNTGG	2 cut(s)	38, 733
BstZ17I	GTATAC	1 cut(s)	696
BsuRI	GGCC	4 cut(s)	407, 820, 937, 997
BtgI	CCRYGG	1 cut(s)	617
BtrI	CACGTC	1 cut(s)	484
BtsCI	GGATG	1 cut(s)	789
BtsI	GCAGTG	1 cut(s)	838
BtsIMutI	CAGTG	3 cut(s)	246, 838, 1012
BveI	ACCTGC	1 cut(s)	79
CaiI	CAGNNNCTG	1 cut(s)	53
Cfr10I	RCCGGY	1 cut(s)	117
Cfr13I	GGNCC	7 cut(s)	120, 229, 370, 576, 621, 736, 995
Csp6I	GTAC	6 cut(s)	331, 465, 604, 860, 893, 1027
CspCI	CAANNNNNGTGG	2 cut(s)	465, 500
CviAII	CATG	7 cut(s)	142, 226, 322, 409, 547, 618, 766
CviQI	GTAC	6 cut(s)	331, 465, 604, 860, 893, 1027
DdeI	CTNAG	6 cut(s)	54, 214, 259, 356, 560, 909
DpnI	GATC	6 cut(s)	326, 378, 396, 526, 758, 1075
DpnII	GATC	6 cut(s)	324, 376, 394, 524, 756, 1073
EaeI	YGGCCR	2 cut(s)	405, 818
Eam1104I	CTCTTC	1 cut(s)	1100
EarI	CTCTTC	1 cut(s)	1100
Eco130I	CCWWGG	2 cut(s)	37, 617
Eco147I	AGGCCT	1 cut(s)	937
Eco32I	GATATC	1 cut(s)	532
Eco47I	GGWCC	6 cut(s)	120, 229, 370, 576, 621, 736
EcoRI	GAATTC	1 cut(s)	1125
EcoRII	CCWGG	3 cut(s)	703, 937, 997
EcoRV	GATATC	1 cut(s)	532
EcoT14I	CCWWGG	2 cut(s)	37, 617
EcoT22I	ATGCAT	1 cut(s)	658
ErhI	CCWWGG	2 cut(s)	37, 617
FaeI	CATG	7 cut(s)	145, 229, 325, 412, 550, 621, 769
FalI	AAGNNNNNCTT	4 cut(s)	502, 534, 1097, 1129
FaqI	GGGAC	3 cut(s)	215, 386, 937
FatI	CATG	7 cut(s)	141, 225, 321, 408, 546, 617, 765
FblI	GTMKAC	1 cut(s)	695
Fnu4HI	GCNGC	1 cut(s)	870
FokI	GGATG	1 cut(s)	776
Fsp4HI	GCNGC	1 cut(s)	870
FspBI	CTAG	2 cut(s)	398, 647
GluI	GCNGC	1 cut(s)	870
GsuI	CTGGAG	1 cut(s)	811
HaeIII	GGCC	4 cut(s)	407, 820, 937, 997
HapII	CCGG	9 cut(s)	118, 179, 328, 404, 574, 793, 848, 1043, 1100
Hin1II	CATG	7 cut(s)	145, 229, 325, 412, 550, 621, 769
HinfI	GANTC	3 cut(s)	192, 564, 749
HpaII	CCGG	9 cut(s)	118, 179, 328, 404, 574, 793, 848, 1043, 1100
HphI	GGTGA	1 cut(s)	958
Hpy166II	GTNNAC	3 cut(s)	604, 696, 862
Hpy188I	TCNGA	8 cut(s)	262, 290, 370, 524, 529, 538, 563, 987
Hpy188III	TCNNGA	3 cut(s)	201, 568, 734
Hpy8I	GTNNAC	3 cut(s)	604, 696, 862
Hpy99I	CGWCG	1 cut(s)	1139
HpyAV	CCTTC	3 cut(s)	29, 967, 982
HpyCH4III	ACNGT	2 cut(s)	544, 693
HpyCH4IV	ACGT	1 cut(s)	483
HpyCH4V	TGCA	2 cut(s)	656, 968
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 72, 160
HpyF3I	CTNAG	6 cut(s)	54, 214, 259, 356, 560, 909
HpySE526I	ACGT	1 cut(s)	483
Hsp92II	CATG	7 cut(s)	145, 229, 325, 412, 550, 621, 769
KpnI	GGTACC	2 cut(s)	334, 468
Kzo9I	GATC	6 cut(s)	324, 376, 394, 524, 756, 1073
LweI	GCATC	2 cut(s)	160, 856
MaeI	CTAG	2 cut(s)	398, 647
MaeII	ACGT	1 cut(s)	483
MaeIII	GTNAC	2 cut(s)	674, 904
MalI	GATC	6 cut(s)	326, 378, 396, 526, 758, 1075
MboI	GATC	6 cut(s)	324, 376, 394, 524, 756, 1073
MboII	GAAGA	4 cut(s)	583, 722, 751, 1117
MfeI	CAATTG	1 cut(s)	918
MhlI	GDGCHC	1 cut(s)	132
MlsI	TGGCCA	1 cut(s)	820
MluCI	AATT	6 cut(s)	69, 100, 886, 900, 918, 1125
MluNI	TGGCCA	1 cut(s)	820
MlyI	GAGTC	2 cut(s)	186, 743
MnlI	CCTC	9 cut(s)	268, 311, 344, 347, 365, 634, 927, 1002, 1101
Mox20I	TGGCCA	1 cut(s)	820
Mph1103I	ATGCAT	1 cut(s)	658
MscI	TGGCCA	1 cut(s)	820
MseI	TTAA	1 cut(s)	188
MslI	CAYNNNNRTG	1 cut(s)	599
Msp20I	TGGCCA	1 cut(s)	820
MspI	CCGG	9 cut(s)	118, 179, 328, 404, 574, 793, 848, 1043, 1100
MspR9I	CCNGG	6 cut(s)	179, 404, 705, 849, 939, 999
MunI	CAATTG	1 cut(s)	918
MvaI	CCWGG	3 cut(s)	705, 939, 999
MwoI	GCNNNNNNNGC	3 cut(s)	11, 72, 160
NciI	CCSGG	3 cut(s)	179, 404, 849
NcoI	CCATGG	1 cut(s)	617
NdeII	GATC	6 cut(s)	324, 376, 394, 524, 756, 1073
NlaIII	CATG	7 cut(s)	145, 229, 325, 412, 550, 621, 769
NlaIV	GGNNCC	6 cut(s)	6, 205, 231, 332, 466, 552
NmeAIII	GCCGAG	1 cut(s)	756
NsiI	ATGCAT	1 cut(s)	658
PceI	AGGCCT	1 cut(s)	937
PfeI	GAWTC	1 cut(s)	564
PflFI	GACNNNGTC	1 cut(s)	580
PflMI	CCANNNNNTGG	3 cut(s)	512, 710, 920
PkrI	GCNGC	1 cut(s)	871
Ple19I	CGATCG	1 cut(s)	1076
PleI	GAGTC	2 cut(s)	186, 743
PpsI	GAGTC	2 cut(s)	186, 743
Psp6I	CCWGG	3 cut(s)	703, 937, 997
PspGI	CCWGG	3 cut(s)	703, 937, 997
PspN4I	GGNNCC	6 cut(s)	6, 205, 231, 332, 466, 552
PspPI	GGNCC	7 cut(s)	120, 229, 370, 576, 621, 736, 995
PstNI	CAGNNNCTG	1 cut(s)	53
PsyI	GACNNNGTC	1 cut(s)	580
PvuI	CGATCG	1 cut(s)	1076
RsaI	GTAC	6 cut(s)	332, 466, 605, 861, 894, 1028
RsaNI	GTAC	6 cut(s)	331, 465, 604, 860, 893, 1027
RseI	CAYNNNNRTG	1 cut(s)	599
SaqAI	TTAA	1 cut(s)	188
SatI	GCNGC	1 cut(s)	870
Sau3AI	GATC	6 cut(s)	324, 376, 394, 524, 756, 1073
Sau96I	GGNCC	7 cut(s)	120, 229, 370, 576, 621, 736, 995
SchI	GAGTC	2 cut(s)	186, 743
ScrFI	CCNGG	6 cut(s)	179, 404, 705, 849, 939, 999
SduI	GDGCHC	1 cut(s)	132
SetI	ASST	9 cut(s)	10, 93, 165, 336, 362, 466, 486, 777, 959
SfaNI	GCATC	2 cut(s)	160, 856
SinI	GGWCC	6 cut(s)	120, 229, 370, 576, 621, 736
SmiMI	CAYNNNNRTG	1 cut(s)	599
Sse9I	AATT	6 cut(s)	69, 100, 886, 900, 918, 1125
SseBI	AGGCCT	1 cut(s)	937
SsiI	CCGC	2 cut(s)	806, 870
SspMI	CTAG	2 cut(s)	398, 647
StuI	AGGCCT	1 cut(s)	937
StyD4I	CCNGG	6 cut(s)	177, 402, 703, 847, 937, 997
StyI	CCWWGG	2 cut(s)	37, 617
TaaI	ACNGT	2 cut(s)	544, 693
TaiI	ACGT	1 cut(s)	486
TaqI	TCGA	2 cut(s)	62, 126
TasI	AATT	6 cut(s)	69, 100, 886, 900, 918, 1125
TatI	WGTACW	1 cut(s)	859
TauI	GCSGC	1 cut(s)	872
TfiI	GAWTC	1 cut(s)	564
Tru1I	TTAA	1 cut(s)	188
Tru9I	TTAA	1 cut(s)	188
TscAI	CASTG	3 cut(s)	253, 838, 1019
TspDTI	ATGAA	9 cut(s)	158, 255, 294, 363, 583, 949, 993, 1105, 1118
TspRI	CASTG	3 cut(s)	253, 838, 1019
Tth111I	GACNNNGTC	1 cut(s)	580
Van91I	CCANNNNNTGG	3 cut(s)	512, 710, 920
VpaK11BI	GGWCC	6 cut(s)	120, 229, 370, 576, 621, 736
XapI	RAATTY	2 cut(s)	886, 1125
XmiI	GTMKAC	1 cut(s)	695
XspI	CTAG	2 cut(s)	398, 647
Zsp2I	ATGCAT	1 cut(s)	658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.