Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0013919

Physical Location & Seq

Genomic Coordinates Forward (+)

16727027 .. 16728747

Gene Structure 1721 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g13120.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGCACCTTTGGCTTTCCTTCTGCTATTTCCTCTCGTTTGTCTTTCAGCTGCCGAGATTTCGAGCAAAATTGGCATAAACTATGGACAGATAGGGAACAATTTGCCATCACCAAACCGGTCCGTTGAGCTCATCAAATCCATGAAAATAGGGCGTGTGAAGCTCTATGATGCAAACCCTGAAATTTTAAGACTCCTATCCGGAACCAATATCTCAGTCTCCATCATGGTCCCAAACAATGAAATAACTGGCATTGCCTCAGACCAATCCAAAGCAGATGAATGGATCAGAAACAATGTCCTCCCCTACTACCCCGAGACCATGATCCGGTACCTCCTTGTAGGCAATGAAATCCTCAGCTACTTCTCCGACCAAGATCGCCGATTATGGCACGATGTAGTCCCAGCCATGACTAAAATCAAGCACTCTCTCAGAGCCAAAAATATCACCAACATCAAAATAGGTACACCACTAGCAATGGACGTGCTTCAAACAAGTTTCCCACCATCAAGTGGCGCTTTCCGATCAGATGTCTCGGAAACCGTCATTGTTCCGTTGCTCAGATTCCTGAACCGGACCAAGTCATTTTTCTTCATTGATGTGTACCCTTTTTTCCCATGGTCCTCAAATCCCAAAGAGATTAGCCTAGACTTCGCATTACTGAAAAACATTAGTAACAACAGTAGTCTACTGTACACTGACCCCGGAAGTGGTTTGGTCTACACCAATCTTCTAGACCAAATGCTCGACTCCTTGATCTTCGCCATGACCAAGCTCGGCTACCCTCATATCCGGCTCTTGATAGCAGAGACCGGGTGGCCCAACTCCGGCGGGGAACAAAACCAACCGGGGGCTAATGTACAAAATGCAGCCACATATAACCGAAATTTGGTACAAAAGATTGTTACTAAGCCAACCATTGGGACACCTGCGAGGCCTGGTGTGGTGATACCAACATTCATATTTTCTTTGTATGATGAAAATCAAAAGGGTGGCCCTGGAACAGAGAGGCACTGGGGATTGTTGTATGCTGATGGAAATCCAGTTTATGATATCGACTTGACCGGGAAGCGACCAGTGAATGACTACAAACCATTGCCGGAGAAGGGGCACTTCATAAAGAGAATTCATTACGACGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001871 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0022414 GO:0022607 GO:0030198 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

381

Amino Acids

42.48

Weight (kDa)

8.69

Isoelectric Point (pI)

42.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	24 - 353	3.3e-100	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23770 AT4G14080
fragaria_vesca	FvH4_4g13120
malus_domestica	MD04G1019000.v1.1
prunus_persica	Prupe.1G168300_v2.0.a1
pyrus_communis	pycom04g01520
rosa_chinensis	RchiOBHm_Chr4g0412901
rosa_laevigata	RLG00000008249
rosa_multiflora	Rmu_sc0005621.1_g000022 Rmu_sc0012279.1_g000004
rosa_roxburghii	Rroxscaffold_5G00357140
rosa_rugosa	Rorug04G0117400
rosa_samantha	Rh4AG176300 Rh4BG176700 Rh4CG187300 Rh4DG173600
rosa_wichuraiana	Rw4G014800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	937
Acc36I	ACCTGC	1 cut(s)	937
Acc65I	GGTACC	1 cut(s)	330
AccB1I	GGYRCC	2 cut(s)	4, 330
AccB7I	CCANNNNNTGG	2 cut(s)	512, 920
AccI	GTMKAC	2 cut(s)	688, 720
AccIII	TCCGGA	1 cut(s)	200
AciI	CCGC	1 cut(s)	831
AclWI	GGATC	2 cut(s)	293, 319
AcsI	RAATTY	3 cut(s)	183, 886, 1125
AfaI	GTAC	6 cut(s)	332, 466, 605, 695, 861, 894
AfiI	CCNNNNNNNGG	8 cut(s)	327, 512, 710, 827, 850, 889, 920, 1106
AgeI	ACCGGT	1 cut(s)	117
AgsI	TTSAA	1 cut(s)	491
AjiI	CACGTC	1 cut(s)	484
AjnI	CCWGG	2 cut(s)	937, 997
AjuI	GAANNNNNNNTTGG	2 cut(s)	572, 604
AluBI	AGCT	5 cut(s)	50, 130, 163, 360, 775
AluI	AGCT	5 cut(s)	50, 130, 163, 360, 775
Alw21I	GWGCWC	1 cut(s)	132
Alw26I	GTCTC	4 cut(s)	223, 311, 538, 803
AlwI	GGATC	2 cut(s)	293, 319
Ama87I	CYCGRG	1 cut(s)	314
Aor13HI	TCCGGA	1 cut(s)	200
AoxI	GGCC	3 cut(s)	818, 935, 994
ApeKI	GCWGC	2 cut(s)	50, 869
ApoI	RAATTY	3 cut(s)	183, 886, 1125
AsiGI	ACCGGT	1 cut(s)	117
Asp718I	GGTACC	1 cut(s)	330
AspLEI	GCGC	1 cut(s)	518
AspS9I	GGNCC	6 cut(s)	120, 229, 576, 621, 819, 995
AsuC2I	CCSGG	4 cut(s)	705, 814, 849, 1066
AsuHPI	GGTGA	3 cut(s)	102, 439, 958
AvaI	CYCGRG	1 cut(s)	314
AvaII	GGWCC	4 cut(s)	120, 229, 576, 621
BaeGI	GKGCMC	1 cut(s)	1113
BanI	GGYRCC	2 cut(s)	4, 330
BanII	GRGCYC	1 cut(s)	132
Bbv12I	GWGCWC	1 cut(s)	132
BbvCI	CCTCAGC	1 cut(s)	356
BbvI	GCAGC	2 cut(s)	37, 881
BccI	CCATC	4 cut(s)	115, 230, 514, 1028
BciT130I	CCWGG	2 cut(s)	939, 999
BcnI	CCSGG	4 cut(s)	705, 814, 849, 1066
BcoDI	GTCTC	4 cut(s)	223, 311, 538, 803
BfaI	CTAG	3 cut(s)	473, 647, 734
BfoI	RGCGCY	1 cut(s)	519
BfuAI	ACCTGC	1 cut(s)	937
BisI	GCNGC	2 cut(s)	51, 870
BlsI	GCNGC	2 cut(s)	52, 871
Bme1390I	CCNGG	6 cut(s)	705, 814, 849, 939, 999, 1066
Bme18I	GGWCC	4 cut(s)	120, 229, 576, 621
BmeT110I	CYCGRG	1 cut(s)	314
BmgBI	CACGTC	1 cut(s)	484
BmgT120I	GGNCC	6 cut(s)	120, 229, 576, 621, 819, 995
BmiI	GGNNCC	4 cut(s)	6, 205, 231, 332
BmrFI	CCNGG	6 cut(s)	705, 814, 849, 939, 999, 1066
BmrI	ACTGGG	1 cut(s)	1024
BmsI	GCATC	1 cut(s)	160
BmuI	ACTGGG	1 cut(s)	1024
Bpu10I	CCTNAGC	1 cut(s)	356
BpuMI	CCSGG	4 cut(s)	705, 814, 849, 1066
BsaBI	GATNNNNATC	2 cut(s)	981, 1038
BsaI	GGTCTC	2 cut(s)	311, 803
BsaJI	CCNNGG	4 cut(s)	617, 703, 848, 997
BsaWI	WCCGGW	4 cut(s)	117, 200, 327, 573
Bsc4I	CCNNNNNNNGG	8 cut(s)	327, 512, 710, 827, 850, 889, 920, 1106
Bse118I	RCCGGY	1 cut(s)	117
Bse1I	ACTGG	4 cut(s)	253, 1019, 1043, 1076
Bse3DI	GCAATG	4 cut(s)	252, 352, 483, 1094
Bse8I	GATNNNNATC	2 cut(s)	981, 1038
BseAI	TCCGGA	1 cut(s)	200
BseBI	CCWGG	2 cut(s)	939, 999
BseDI	CCNNGG	4 cut(s)	617, 703, 848, 997
BseJI	GATNNNNATC	2 cut(s)	981, 1038
BseLI	CCNNNNNNNGG	8 cut(s)	327, 512, 710, 827, 850, 889, 920, 1106
BseMI	GCAATG	4 cut(s)	252, 352, 483, 1094
BseMII	CTCAG	5 cut(s)	228, 273, 370, 445, 574
BseNI	ACTGG	4 cut(s)	253, 1019, 1043, 1076
BseSI	GKGCMC	1 cut(s)	1113
BseXI	GCAGC	2 cut(s)	37, 881
BseYI	CCCAGC	1 cut(s)	403
BshFI	GGCC	3 cut(s)	820, 937, 996
BshNI	GGYRCC	2 cut(s)	4, 330
BshTI	ACCGGT	1 cut(s)	117
BsiHKAI	GWGCWC	1 cut(s)	132
BsiHKCI	CYCGRG	1 cut(s)	314
BslFI	GGGAC	3 cut(s)	215, 386, 937
BslI	CCNNNNNNNGG	8 cut(s)	327, 512, 710, 827, 850, 889, 920, 1106
BsmAI	GTCTC	4 cut(s)	223, 311, 538, 803
BsmFI	GGGAC	3 cut(s)	215, 386, 937
BsnI	GGCC	3 cut(s)	820, 937, 996
Bso31I	GGTCTC	2 cut(s)	311, 803
BsoBI	CYCGRG	1 cut(s)	314
Bsp1286I	GDGCHC	2 cut(s)	132, 1113
Bsp13I	TCCGGA	1 cut(s)	200
Bsp1407I	TGTACA	2 cut(s)	693, 859
Bsp143I	GATC	5 cut(s)	285, 324, 376, 524, 756
Bsp19I	CCATGG	1 cut(s)	617
BspACI	CCGC	1 cut(s)	831
BspANI	GGCC	3 cut(s)	820, 937, 996
BspCNI	CTCAG	5 cut(s)	227, 272, 369, 444, 573
BspEI	TCCGGA	1 cut(s)	200
BspLI	GGNNCC	4 cut(s)	6, 205, 231, 332
BspMI	ACCTGC	1 cut(s)	937
BspPI	GGATC	2 cut(s)	293, 319
BspT107I	GGYRCC	2 cut(s)	4, 330
BspTNI	GGTCTC	2 cut(s)	311, 803
BsrDI	GCAATG	4 cut(s)	252, 352, 483, 1094
BsrFI	RCCGGY	1 cut(s)	117
BsrGI	TGTACA	2 cut(s)	693, 859
BsrI	ACTGG	4 cut(s)	253, 1019, 1043, 1076
BssAI	RCCGGY	1 cut(s)	117
BssECI	CCNNGG	4 cut(s)	617, 703, 848, 997
BssMI	GATC	5 cut(s)	285, 324, 376, 524, 756
BssT1I	CCWWGG	1 cut(s)	617
Bst2UI	CCWGG	2 cut(s)	939, 999
Bst4CI	ACNGT	3 cut(s)	544, 683, 693
BstAUI	TGTACA	2 cut(s)	693, 859
BstDEI	CTNAG	6 cut(s)	214, 259, 356, 431, 560, 909
BstDSI	CCRYGG	1 cut(s)	617
BstH2I	RGCGCY	1 cut(s)	519
BstHHI	GCGC	1 cut(s)	518
BstKTI	GATC	5 cut(s)	288, 327, 379, 527, 759
BstMAI	GTCTC	4 cut(s)	223, 311, 538, 803
BstMBI	GATC	5 cut(s)	285, 324, 376, 524, 756
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 72, 160
BstNI	CCWGG	2 cut(s)	939, 999
BstSCI	CCNGG	6 cut(s)	703, 812, 847, 937, 997, 1064
BstSLI	GKGCMC	1 cut(s)	1113
BstV1I	GCAGC	2 cut(s)	37, 881
BsuRI	GGCC	3 cut(s)	820, 937, 996
BtgI	CCRYGG	1 cut(s)	617
BtrI	CACGTC	1 cut(s)	484
BtsIMutI	CAGTG	3 cut(s)	696, 1012, 1083
BveI	ACCTGC	1 cut(s)	937
CfoI	GCGC	1 cut(s)	518
Cfr10I	RCCGGY	1 cut(s)	117
Cfr13I	GGNCC	6 cut(s)	120, 229, 576, 621, 819, 995
CpoI	CGGWCCG	1 cut(s)	120
Csp6I	GTAC	6 cut(s)	331, 465, 604, 694, 860, 893
CspAI	ACCGGT	1 cut(s)	117
CspI	CGGWCCG	1 cut(s)	120
CviAII	CATG	6 cut(s)	142, 226, 322, 409, 618, 766
CviQI	GTAC	6 cut(s)	331, 465, 604, 694, 860, 893
DdeI	CTNAG	6 cut(s)	214, 259, 356, 431, 560, 909
DpnI	GATC	5 cut(s)	287, 326, 378, 526, 758
DpnII	GATC	5 cut(s)	285, 324, 376, 524, 756
Ecl136II	GAGCTC	1 cut(s)	130
Eco130I	CCWWGG	1 cut(s)	617
Eco147I	AGGCCT	1 cut(s)	937
Eco24I	GRGCYC	1 cut(s)	132
Eco31I	GGTCTC	2 cut(s)	311, 803
Eco32I	GATATC	1 cut(s)	1054
Eco47I	GGWCC	4 cut(s)	120, 229, 576, 621
Eco53kI	GAGCTC	1 cut(s)	130
Eco88I	CYCGRG	1 cut(s)	314
EcoICRI	GAGCTC	1 cut(s)	130
EcoRI	GAATTC	1 cut(s)	1125
EcoRII	CCWGG	2 cut(s)	937, 997
EcoRV	GATATC	1 cut(s)	1054
EcoT14I	CCWWGG	1 cut(s)	617
EcoT38I	GRGCYC	1 cut(s)	132
ErhI	CCWWGG	1 cut(s)	617
FaeI	CATG	6 cut(s)	145, 229, 325, 412, 621, 769
FalI	AAGNNNNNCTT	4 cut(s)	502, 534, 1097, 1129
FaqI	GGGAC	3 cut(s)	215, 386, 937
FatI	CATG	6 cut(s)	141, 225, 321, 408, 617, 765
FauI	CCCGC	1 cut(s)	824
FblI	GTMKAC	2 cut(s)	688, 720
Fnu4HI	GCNGC	2 cut(s)	51, 870
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	2 cut(s)	51, 870
FspBI	CTAG	3 cut(s)	473, 647, 734
GlaI	GCGC	1 cut(s)	517
GluI	GCNGC	2 cut(s)	51, 870
GsaI	CCCAGC	1 cut(s)	407
HaeII	RGCGCY	1 cut(s)	519
HaeIII	GGCC	3 cut(s)	820, 937, 996
HhaI	GCGC	1 cut(s)	518
Hin1II	CATG	6 cut(s)	145, 229, 325, 412, 621, 769
Hin6I	GCGC	1 cut(s)	516
HinP1I	GCGC	1 cut(s)	516
HinfI	GANTC	3 cut(s)	192, 564, 749
HphI	GGTGA	3 cut(s)	102, 439, 958
Hpy166II	GTNNAC	5 cut(s)	467, 604, 689, 696, 721
Hpy188I	TCNGA	8 cut(s)	262, 290, 370, 434, 524, 529, 538, 563
Hpy188III	TCNNGA	4 cut(s)	201, 568, 734, 799
Hpy8I	GTNNAC	5 cut(s)	467, 604, 689, 696, 721
Hpy99I	CGWCG	1 cut(s)	1139
HpyAV	CCTTC	2 cut(s)	29, 1099
HpyCH4III	ACNGT	3 cut(s)	544, 683, 693
HpyCH4IV	ACGT	1 cut(s)	483
HpyCH4V	TGCA	2 cut(s)	173, 869
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 72, 160
HpyF3I	CTNAG	6 cut(s)	214, 259, 356, 431, 560, 909
HpySE526I	ACGT	1 cut(s)	483
Hsp92II	CATG	6 cut(s)	145, 229, 325, 412, 621, 769
HspAI	GCGC	1 cut(s)	516
Kpn2I	TCCGGA	1 cut(s)	200
KpnI	GGTACC	1 cut(s)	334
Kzo9I	GATC	5 cut(s)	285, 324, 376, 524, 756
Lsp1109I	GCAGC	2 cut(s)	37, 881
LweI	GCATC	1 cut(s)	160
MaeI	CTAG	3 cut(s)	473, 647, 734
MaeII	ACGT	1 cut(s)	483
MaeIII	GTNAC	2 cut(s)	674, 904
MalI	GATC	5 cut(s)	287, 326, 378, 526, 758
MboI	GATC	5 cut(s)	285, 324, 376, 524, 756
MboII	GAAGA	3 cut(s)	583, 722, 751
MhlI	GDGCHC	2 cut(s)	132, 1113
MluCI	AATT	5 cut(s)	69, 100, 183, 886, 1125
MlyI	GAGTC	2 cut(s)	186, 743
MmeI	TCCRAC	1 cut(s)	393
MnlI	CCTC	9 cut(s)	42, 268, 311, 344, 365, 634, 795, 927, 1002
MroI	TCCGGA	1 cut(s)	200
MseI	TTAA	1 cut(s)	188
MslI	CAYNNNNRTG	1 cut(s)	599
MspA1I	CMGCKG	1 cut(s)	50
MspR9I	CCNGG	6 cut(s)	705, 814, 849, 939, 999, 1066
MvaI	CCWGG	2 cut(s)	939, 999
MwoI	GCNNNNNNNGC	3 cut(s)	11, 72, 160
NciI	CCSGG	4 cut(s)	705, 814, 849, 1066
NcoI	CCATGG	1 cut(s)	617
NdeII	GATC	5 cut(s)	285, 324, 376, 524, 756
NlaIII	CATG	6 cut(s)	145, 229, 325, 412, 621, 769
NlaIV	GGNNCC	4 cut(s)	6, 205, 231, 332
NmeAIII	GCCGAG	2 cut(s)	79, 756
PaqCI	CACCTGC	1 cut(s)	937
PceI	AGGCCT	1 cut(s)	937
PfeI	GAWTC	1 cut(s)	564
PflFI	GACNNNGTC	1 cut(s)	580
PflMI	CCANNNNNTGG	2 cut(s)	512, 920
PinAI	ACCGGT	1 cut(s)	117
PkrI	GCNGC	2 cut(s)	52, 871
PleI	GAGTC	2 cut(s)	186, 743
PpsI	GAGTC	2 cut(s)	186, 743
Psp124BI	GAGCTC	1 cut(s)	132
Psp6I	CCWGG	2 cut(s)	937, 997
PspFI	CCCAGC	1 cut(s)	403
PspGI	CCWGG	2 cut(s)	937, 997
PspN4I	GGNNCC	4 cut(s)	6, 205, 231, 332
PspPI	GGNCC	6 cut(s)	120, 229, 576, 621, 819, 995
PsyI	GACNNNGTC	1 cut(s)	580
PvuII	CAGCTG	1 cut(s)	50
RsaI	GTAC	6 cut(s)	332, 466, 605, 695, 861, 894
RsaNI	GTAC	6 cut(s)	331, 465, 604, 694, 860, 893
RseI	CAYNNNNRTG	1 cut(s)	599
Rsr2I	CGGWCCG	1 cut(s)	120
RsrII	CGGWCCG	1 cut(s)	120
SacI	GAGCTC	1 cut(s)	132
SaqAI	TTAA	1 cut(s)	188
SatI	GCNGC	2 cut(s)	51, 870
Sau3AI	GATC	5 cut(s)	285, 324, 376, 524, 756
Sau96I	GGNCC	6 cut(s)	120, 229, 576, 621, 819, 995
SchI	GAGTC	2 cut(s)	186, 743
ScrFI	CCNGG	6 cut(s)	705, 814, 849, 939, 999, 1066
SduI	GDGCHC	2 cut(s)	132, 1113
SfaNI	GCATC	1 cut(s)	160
SinI	GGWCC	4 cut(s)	120, 229, 576, 621
SmiMI	CAYNNNNRTG	1 cut(s)	599
Sse9I	AATT	5 cut(s)	69, 100, 183, 886, 1125
SseBI	AGGCCT	1 cut(s)	937
SsiI	CCGC	1 cut(s)	831
SspMI	CTAG	3 cut(s)	473, 647, 734
SstI	GAGCTC	1 cut(s)	132
StuI	AGGCCT	1 cut(s)	937
StyD4I	CCNGG	6 cut(s)	703, 812, 847, 937, 997, 1064
StyI	CCWWGG	1 cut(s)	617
TaaI	ACNGT	3 cut(s)	544, 683, 693
TaiI	ACGT	1 cut(s)	486
TaqI	TCGA	3 cut(s)	62, 747, 1056
TasI	AATT	5 cut(s)	69, 100, 183, 886, 1125
TatI	WGTACW	2 cut(s)	693, 859
TfiI	GAWTC	1 cut(s)	564
Tru1I	TTAA	1 cut(s)	188
Tru9I	TTAA	1 cut(s)	188
TscAI	CASTG	3 cut(s)	703, 1019, 1083
TseI	GCWGC	2 cut(s)	50, 869
TspDTI	ATGAA	9 cut(s)	158, 255, 294, 363, 583, 949, 993, 1105, 1118
TspGWI	ACGGA	2 cut(s)	112, 543
TspRI	CASTG	3 cut(s)	703, 1019, 1083
Tth111I	GACNNNGTC	1 cut(s)	580
Van91I	CCANNNNNTGG	2 cut(s)	512, 920
VpaK11BI	GGWCC	4 cut(s)	120, 229, 576, 621
XapI	RAATTY	3 cut(s)	183, 886, 1125
XbaI	TCTAGA	1 cut(s)	733
XmiI	GTMKAC	2 cut(s)	688, 720
XspI	CTAG	3 cut(s)	473, 647, 734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.