Rh4AG176300

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Forward (+)
44221336 .. 44223908
2573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG176300.1

Sequence Viewer

Length: 1269 bp
ATGCACACATTCTGCATTCCAATATTAACATCTTCTGTGTTCACAGTATATCTAGATGAGCCCGTATGGGAGTTCTCTGCAGCAGAACAAATCATTCTGCATAAGATCAAAGCACCTACAGATCAAATGGCACCTTTGGCTTTCCTTCTGCTATTCCATCTCCCTGGTTTTTCAGTTGCTGAGATTTCGAGCAAAATTGGCATAAACTATGGGCAGGTAGGGAACAATTTGCCTTCTCCAAGCCGGTCCATCGAGCGCATCAAATCCATGAAAATAGGGCGTGTGAAGCTCTATGATGCCAACCCGGAAATTTTAAGACTCCTATCCGGAACCAATATCTCAGTCTCCATCATGGTCCCAAACAATGAAATCACTGGCATTGCCTCAGACCAATCCAAAGCAGATGAATGGGTCAGAAACAATGTCCTCCCCTACTACCCCAAAACCATGATCCGGTACCTCCTCGTAGGCAATGAAATCCTCAGCTATTTCTCGGACCAAGATCGCCAAATATGGCACGATCTAGTCCCGGCCATGACTAAAATCAAGTATTCTCTCAAATCCAAAAATATCACTAACATCAAAATAGGTACCCCATTAGCAATGGACGTGGTTCAAACGAGTTTCCCACCATCAAGTGGCTCTTTCCGATCCGATATCTCGGAAACAGTCATGGTTCCCTTGGTCAGATTCTTGAACCGGACCAAGTCATTTTTCTTCATTGATGTGTACCCTTTTTTCCCATGGTCCTCAAACCCCAAAGACATTAGCCTAGACTATGCATTATTGAAAAACATTAGTAACAACAGTACTCTACGGTATACTGACCCAGGAAGTGGTTTGGTCTATACCAATCTTCTGGACCAAATGCTTGACTCCTTGATCTTCGCCATGACCAAGCTCGGCTACCCAAACATCCGGCTTTTGATAGCGGAGACTGGGTGGCCAAACTCCAGCAGTGAGCATAACCAACCGGGGGCTAATGTACACAATGCCGCCACATACAACCGAAATTTGGTACAAAAAATTGTTACTAAGCCAACAATTGGGACACCAGCGAGGCCTGGTGTAGTGATACCAACCTTCATATTTGCATTGTATGATGAAAATCAGAAGGGTGGGCCTGGAACAGAGAGGCACTGGGGATTGTTGTACGCTGATGGAACTCCGGTTTATGATATTGACTTGACGGGGAAGCGATCGGCAAATGACTACGAACCATTGCCGGAGAAGAGGCACTTCATAAAGGGAATTCATTACGACGACTGA

Protein Analysis

422

Amino Acids

47.4

Weight (kDa)

7.77

Isoelectric Point (pI)

44.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 66 - 395 3.2e-99 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013919)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23770 AT4G14080
fragaria_vesca FvH4_4g13120
malus_domestica MD04G1019000.v1.1
prunus_persica Prupe.1G168300_v2.0.a1
pyrus_communis pycom04g01520
rosa_chinensis RchiOBHm_Chr4g0412901
rosa_laevigata RLG00000008249
rosa_multiflora Rmu_sc0005621.1_g000022 Rmu_sc0012279.1_g000004
rosa_roxburghii Rroxscaffold_5G00357140
rosa_rugosa Rorug04G0117400
rosa_samantha Rh4AG176300 Rh4BG176700 Rh4CG187300 Rh4DG173600
rosa_wichuraiana Rw4G014800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 205
Acc65I GGTACC 2 cut(s) 456, 590
AccB1I GGYRCC 3 cut(s) 130, 456, 590
AccB7I CCANNNNNTGG 3 cut(s) 638, 836, 1046
AccI GTMKAC 1 cut(s) 821
AccIII TCCGGA 1 cut(s) 326
AciI CCGC 2 cut(s) 932, 996
AclWI GGATC 2 cut(s) 445, 645
AcoI YGGCCR 2 cut(s) 531, 944
AcsI RAATTY 3 cut(s) 309, 1012, 1251
AfaI GTAC 7 cut(s) 458, 592, 731, 811, 987, 1020, 1154
AfiI CCNNNNNNNGG 6 cut(s) 453, 638, 836, 976, 1015, 1046
AgsI TTSAA 3 cut(s) 617, 697, 790
AjiI CACGTC 1 cut(s) 610
AjnI CCWGG 4 cut(s) 163, 829, 1063, 1123
AjuI GAANNNNNNNTTGG 2 cut(s) 698, 730
AluBI AGCT 3 cut(s) 289, 486, 901
AluI AGCT 3 cut(s) 289, 486, 901
Alw26I GTCTC 2 cut(s) 349, 929
AlwI GGATC 2 cut(s) 445, 645
AlwNI CAGNNNCTG 1 cut(s) 179
Aor13HI TCCGGA 1 cut(s) 326
AoxI GGCC 4 cut(s) 531, 944, 1061, 1121
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 3 cut(s) 309, 1012, 1251
Asp718I GGTACC 2 cut(s) 456, 590
AspLEI GCGC 1 cut(s) 258
AspS9I GGNCC 7 cut(s) 246, 355, 496, 702, 747, 862, 1121
AsuC2I CCSGG 3 cut(s) 305, 530, 975
AvaII GGWCC 6 cut(s) 246, 355, 496, 702, 747, 862
BalI TGGCCA 1 cut(s) 946
BanI GGYRCC 3 cut(s) 130, 456, 590
BanII GRGCYC 1 cut(s) 63
BbvCI CCTCAGC 1 cut(s) 482
BbvI GCAGC 1 cut(s) 92
BccI CCATC 5 cut(s) 165, 257, 356, 640, 1154
BciT130I CCWGG 4 cut(s) 165, 831, 1065, 1125
BcnI CCSGG 3 cut(s) 305, 530, 975
BcoDI GTCTC 2 cut(s) 349, 929
BfaI CTAG 3 cut(s) 53, 524, 773
BfmI CTRYAG 2 cut(s) 78, 117
BfuAI ACCTGC 1 cut(s) 205
BisI GCNGC 2 cut(s) 81, 996
BlsI GCNGC 2 cut(s) 82, 997
BmcAI AGTACT 1 cut(s) 811
Bme1390I CCNGG 7 cut(s) 165, 305, 530, 831, 975, 1065, 1125
Bme18I GGWCC 6 cut(s) 246, 355, 496, 702, 747, 862
BmgBI CACGTC 1 cut(s) 610
BmgT120I GGNCC 7 cut(s) 246, 355, 496, 702, 747, 862, 1121
BmiI GGNNCC 6 cut(s) 132, 331, 357, 458, 592, 678
BmrFI CCNGG 7 cut(s) 165, 305, 530, 831, 975, 1065, 1125
BmrI ACTGGG 2 cut(s) 948, 1150
BmsI GCATC 2 cut(s) 267, 286
BmuI ACTGGG 2 cut(s) 948, 1150
BpmI CTGGAG 1 cut(s) 937
Bpu10I CCTNAGC 1 cut(s) 482
BpuMI CCSGG 3 cut(s) 305, 530, 975
BsaBI GATNNNNATC 1 cut(s) 1107
BsaJI CCNNGG 5 cut(s) 163, 681, 743, 829, 974
BsaWI WCCGGW 4 cut(s) 326, 453, 699, 1168
BsaXI ACNNNNNCTCC 2 cut(s) 926, 956
Bsc4I CCNNNNNNNGG 6 cut(s) 453, 638, 836, 976, 1015, 1046
Bse118I RCCGGY 1 cut(s) 243
Bse1I ACTGG 3 cut(s) 379, 943, 1145
Bse3DI GCAATG 4 cut(s) 378, 478, 609, 1220
Bse8I GATNNNNATC 1 cut(s) 1107
BseAI TCCGGA 1 cut(s) 326
BseBI CCWGG 4 cut(s) 165, 831, 1065, 1125
BseDI CCNNGG 5 cut(s) 163, 681, 743, 829, 974
BseGI GGATG 1 cut(s) 915
BseJI GATNNNNATC 1 cut(s) 1107
BseLI CCNNNNNNNGG 6 cut(s) 453, 638, 836, 976, 1015, 1046
BseMI GCAATG 4 cut(s) 378, 478, 609, 1220
BseMII CTCAG 4 cut(s) 171, 354, 399, 496
BseNI ACTGG 3 cut(s) 379, 943, 1145
BseRI GAGGAG 1 cut(s) 452
BseXI GCAGC 1 cut(s) 92
Bsh1285I CGRYCG 1 cut(s) 1202
BshFI GGCC 4 cut(s) 533, 946, 1063, 1123
BshNI GGYRCC 3 cut(s) 130, 456, 590
BsiEI CGRYCG 1 cut(s) 1202
BslFI GGGAC 3 cut(s) 341, 512, 1063
BslI CCNNNNNNNGG 6 cut(s) 453, 638, 836, 976, 1015, 1046
BsmAI GTCTC 2 cut(s) 349, 929
BsmFI GGGAC 3 cut(s) 341, 512, 1063
BsmI GAATGC 1 cut(s) 15
BsnI GGCC 4 cut(s) 533, 946, 1063, 1123
Bsp1286I GDGCHC 1 cut(s) 63
Bsp13I TCCGGA 1 cut(s) 326
Bsp1407I TGTACA 1 cut(s) 985
Bsp143I GATC 8 cut(s) 105, 121, 450, 502, 520, 650, 882, 1199
Bsp19I CCATGG 1 cut(s) 743
BspACI CCGC 2 cut(s) 932, 996
BspANI GGCC 4 cut(s) 533, 946, 1063, 1123
BspCNI CTCAG 4 cut(s) 172, 353, 398, 495
BspEI TCCGGA 1 cut(s) 326
BspLI GGNNCC 6 cut(s) 132, 331, 357, 458, 592, 678
BspMAI CTGCAG 1 cut(s) 82
BspMI ACCTGC 1 cut(s) 205
BspPI GGATC 2 cut(s) 445, 645
BspT107I GGYRCC 3 cut(s) 130, 456, 590
BsrDI GCAATG 4 cut(s) 378, 478, 609, 1220
BsrFI RCCGGY 1 cut(s) 243
BsrGI TGTACA 1 cut(s) 985
BsrI ACTGG 3 cut(s) 379, 943, 1145
BssAI RCCGGY 1 cut(s) 243
BssECI CCNNGG 5 cut(s) 163, 681, 743, 829, 974
BssMI GATC 8 cut(s) 105, 121, 450, 502, 520, 650, 882, 1199
BssNAI GTATAC 1 cut(s) 822
BssT1I CCWWGG 2 cut(s) 681, 743
Bst1107I GTATAC 1 cut(s) 822
Bst2UI CCWGG 4 cut(s) 165, 831, 1065, 1125
Bst4CI ACNGT 4 cut(s) 46, 670, 809, 819
Bst6I CTCTTC 1 cut(s) 1226
BstAUI TGTACA 1 cut(s) 985
BstDEI CTNAG 5 cut(s) 180, 340, 385, 482, 1035
BstDSI CCRYGG 1 cut(s) 743
BstF5I GGATG 1 cut(s) 915
BstHHI GCGC 1 cut(s) 258
BstKTI GATC 8 cut(s) 108, 124, 453, 505, 523, 653, 885, 1202
BstMAI GTCTC 2 cut(s) 349, 929
BstMBI GATC 8 cut(s) 105, 121, 450, 502, 520, 650, 882, 1199
BstMCI CGRYCG 1 cut(s) 1202
BstMWI GCNNNNNNNGC 3 cut(s) 137, 198, 286
BstNI CCWGG 4 cut(s) 165, 831, 1065, 1125
BstSCI CCNGG 7 cut(s) 163, 303, 528, 829, 973, 1063, 1123
BstSFI CTRYAG 2 cut(s) 78, 117
BstV1I GCAGC 1 cut(s) 92
BstXI CCANNNNNNTGG 2 cut(s) 164, 859
BstZ17I GTATAC 1 cut(s) 822
BsuRI GGCC 4 cut(s) 533, 946, 1063, 1123
BtgI CCRYGG 1 cut(s) 743
BtrI CACGTC 1 cut(s) 610
BtsCI GGATG 1 cut(s) 915
BtsI GCAGTG 1 cut(s) 964
BtsIMutI CAGTG 3 cut(s) 372, 964, 1138
BveI ACCTGC 1 cut(s) 205
CaiI CAGNNNCTG 1 cut(s) 179
CfoI GCGC 1 cut(s) 258
Cfr10I RCCGGY 1 cut(s) 243
Cfr13I GGNCC 7 cut(s) 246, 355, 496, 702, 747, 862, 1121
Csp6I GTAC 7 cut(s) 457, 591, 730, 810, 986, 1019, 1153
CspCI CAANNNNNGTGG 2 cut(s) 591, 626
CviAII CATG 7 cut(s) 268, 352, 448, 535, 673, 744, 892
CviQI GTAC 7 cut(s) 457, 591, 730, 810, 986, 1019, 1153
DdeI CTNAG 5 cut(s) 180, 340, 385, 482, 1035
DpnI GATC 8 cut(s) 107, 123, 452, 504, 522, 652, 884, 1201
DpnII GATC 8 cut(s) 105, 121, 450, 502, 520, 650, 882, 1199
EaeI YGGCCR 2 cut(s) 531, 944
Eam1104I CTCTTC 1 cut(s) 1226
EarI CTCTTC 1 cut(s) 1226
Eco130I CCWWGG 2 cut(s) 681, 743
Eco147I AGGCCT 1 cut(s) 1063
Eco24I GRGCYC 1 cut(s) 63
Eco32I GATATC 1 cut(s) 658
Eco47I GGWCC 6 cut(s) 246, 355, 496, 702, 747, 862
EcoRI GAATTC 1 cut(s) 1251
EcoRII CCWGG 4 cut(s) 163, 829, 1063, 1123
EcoRV GATATC 1 cut(s) 658
EcoT14I CCWWGG 2 cut(s) 681, 743
EcoT22I ATGCAT 1 cut(s) 784
EcoT38I GRGCYC 1 cut(s) 63
ErhI CCWWGG 2 cut(s) 681, 743
FaeI CATG 7 cut(s) 271, 355, 451, 538, 676, 747, 895
FalI AAGNNNNNCTT 4 cut(s) 628, 660, 1223, 1255
FaqI GGGAC 3 cut(s) 341, 512, 1063
FatI CATG 7 cut(s) 267, 351, 447, 534, 672, 743, 891
FblI GTMKAC 1 cut(s) 821
Fnu4HI GCNGC 2 cut(s) 81, 996
FokI GGATG 1 cut(s) 902
FriOI GRGCYC 1 cut(s) 63
Fsp4HI GCNGC 2 cut(s) 81, 996
FspBI CTAG 3 cut(s) 53, 524, 773
GlaI GCGC 1 cut(s) 257
GluI GCNGC 2 cut(s) 81, 996
GsuI CTGGAG 1 cut(s) 937
HaeIII GGCC 4 cut(s) 533, 946, 1063, 1123
HhaI GCGC 1 cut(s) 258
Hin1II CATG 7 cut(s) 271, 355, 451, 538, 676, 747, 895
Hin6I GCGC 1 cut(s) 256
HinP1I GCGC 1 cut(s) 256
HinfI GANTC 3 cut(s) 318, 690, 875
Hpy166II GTNNAC 4 cut(s) 42, 730, 822, 988
Hpy188I TCNGA 8 cut(s) 388, 416, 496, 650, 655, 664, 689, 1113
Hpy188III TCNNGA 4 cut(s) 53, 327, 694, 860
Hpy8I GTNNAC 4 cut(s) 42, 730, 822, 988
Hpy99I CGWCG 1 cut(s) 1265
HpyAV CCTTC 4 cut(s) 155, 243, 1093, 1108
HpyCH4III ACNGT 4 cut(s) 46, 670, 809, 819
HpyCH4IV ACGT 1 cut(s) 609
HpyCH4V TGCA 6 cut(s) 4, 15, 80, 100, 782, 1094
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 198, 286
HpyF3I CTNAG 5 cut(s) 180, 340, 385, 482, 1035
HpySE526I ACGT 1 cut(s) 609
Hsp92II CATG 7 cut(s) 271, 355, 451, 538, 676, 747, 895
HspAI GCGC 1 cut(s) 256
Kpn2I TCCGGA 1 cut(s) 326
KpnI GGTACC 2 cut(s) 460, 594
Kzo9I GATC 8 cut(s) 105, 121, 450, 502, 520, 650, 882, 1199
Lsp1109I GCAGC 1 cut(s) 92
LweI GCATC 2 cut(s) 267, 286
MaeI CTAG 3 cut(s) 53, 524, 773
MaeII ACGT 1 cut(s) 609
MaeIII GTNAC 2 cut(s) 800, 1030
MalI GATC 8 cut(s) 107, 123, 452, 504, 522, 652, 884, 1201
MboI GATC 8 cut(s) 105, 121, 450, 502, 520, 650, 882, 1199
MboII GAAGA 5 cut(s) 24, 709, 848, 877, 1243
MfeI CAATTG 1 cut(s) 1044
MhlI GDGCHC 1 cut(s) 63
MlsI TGGCCA 1 cut(s) 946
MluCI AATT 7 cut(s) 195, 226, 309, 1012, 1026, 1044, 1251
MluNI TGGCCA 1 cut(s) 946
MlyI GAGTC 2 cut(s) 312, 869
MnlI CCTC 9 cut(s) 394, 437, 470, 473, 491, 760, 1053, 1128, 1227
Mox20I TGGCCA 1 cut(s) 946
Mph1103I ATGCAT 1 cut(s) 784
MroI TCCGGA 1 cut(s) 326
MscI TGGCCA 1 cut(s) 946
MseI TTAA 2 cut(s) 26, 314
MslI CAYNNNNRTG 1 cut(s) 725
Msp20I TGGCCA 1 cut(s) 946
MspR9I CCNGG 7 cut(s) 165, 305, 530, 831, 975, 1065, 1125
MunI CAATTG 1 cut(s) 1044
Mva1269I GAATGC 1 cut(s) 15
MvaI CCWGG 4 cut(s) 165, 831, 1065, 1125
MwoI GCNNNNNNNGC 3 cut(s) 137, 198, 286
NciI CCSGG 3 cut(s) 305, 530, 975
NcoI CCATGG 1 cut(s) 743
NdeII GATC 8 cut(s) 105, 121, 450, 502, 520, 650, 882, 1199
NlaIII CATG 7 cut(s) 271, 355, 451, 538, 676, 747, 895
NlaIV GGNNCC 6 cut(s) 132, 331, 357, 458, 592, 678
NmeAIII GCCGAG 1 cut(s) 882
NsiI ATGCAT 1 cut(s) 784
PceI AGGCCT 1 cut(s) 1063
PctI GAATGC 1 cut(s) 15
PfeI GAWTC 1 cut(s) 690
PflFI GACNNNGTC 1 cut(s) 706
PflMI CCANNNNNTGG 3 cut(s) 638, 836, 1046
PkrI GCNGC 2 cut(s) 82, 997
Ple19I CGATCG 1 cut(s) 1202
PleI GAGTC 2 cut(s) 312, 869
PpsI GAGTC 2 cut(s) 312, 869
Psp6I CCWGG 4 cut(s) 163, 829, 1063, 1123
PspGI CCWGG 4 cut(s) 163, 829, 1063, 1123
PspN4I GGNNCC 6 cut(s) 132, 331, 357, 458, 592, 678
PspPI GGNCC 7 cut(s) 246, 355, 496, 702, 747, 862, 1121
PstI CTGCAG 1 cut(s) 82
PstNI CAGNNNCTG 1 cut(s) 179
PsyI GACNNNGTC 1 cut(s) 706
PvuI CGATCG 1 cut(s) 1202
RsaI GTAC 7 cut(s) 458, 592, 731, 811, 987, 1020, 1154
RsaNI GTAC 7 cut(s) 457, 591, 730, 810, 986, 1019, 1153
RseI CAYNNNNRTG 1 cut(s) 725
SaqAI TTAA 2 cut(s) 26, 314
SatI GCNGC 2 cut(s) 81, 996
Sau3AI GATC 8 cut(s) 105, 121, 450, 502, 520, 650, 882, 1199
Sau96I GGNCC 7 cut(s) 246, 355, 496, 702, 747, 862, 1121
ScaI AGTACT 1 cut(s) 811
SchI GAGTC 2 cut(s) 312, 869
ScrFI CCNGG 7 cut(s) 165, 305, 530, 831, 975, 1065, 1125
SduI GDGCHC 1 cut(s) 63
SfaNI GCATC 2 cut(s) 267, 286
SfcI CTRYAG 2 cut(s) 78, 117
SinI GGWCC 6 cut(s) 246, 355, 496, 702, 747, 862
SmiMI CAYNNNNRTG 1 cut(s) 725
Sse9I AATT 7 cut(s) 195, 226, 309, 1012, 1026, 1044, 1251
SseBI AGGCCT 1 cut(s) 1063
SsiI CCGC 2 cut(s) 932, 996
SspI AATATT 1 cut(s) 24
SspMI CTAG 3 cut(s) 53, 524, 773
StuI AGGCCT 1 cut(s) 1063
StyD4I CCNGG 7 cut(s) 163, 303, 528, 829, 973, 1063, 1123
StyI CCWWGG 2 cut(s) 681, 743
TaaI ACNGT 4 cut(s) 46, 670, 809, 819
TaiI ACGT 1 cut(s) 612
TaqI TCGA 2 cut(s) 188, 252
TasI AATT 7 cut(s) 195, 226, 309, 1012, 1026, 1044, 1251
TatI WGTACW 2 cut(s) 809, 985
TauI GCSGC 1 cut(s) 998
TfiI GAWTC 1 cut(s) 690
Tru1I TTAA 2 cut(s) 26, 314
Tru9I TTAA 2 cut(s) 26, 314
TscAI CASTG 3 cut(s) 379, 964, 1145
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 9 cut(s) 284, 381, 420, 489, 709, 1075, 1119, 1231, 1244
TspRI CASTG 3 cut(s) 379, 964, 1145
Tth111I GACNNNGTC 1 cut(s) 706
Van91I CCANNNNNTGG 3 cut(s) 638, 836, 1046
VpaK11BI GGWCC 6 cut(s) 246, 355, 496, 702, 747, 862
XapI RAATTY 3 cut(s) 309, 1012, 1251
XbaI TCTAGA 1 cut(s) 52
XmiI GTMKAC 1 cut(s) 821
XspI CTAG 3 cut(s) 53, 524, 773
ZrmI AGTACT 1 cut(s) 811
Zsp2I ATGCAT 1 cut(s) 784
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.