RLG00000008249

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
27719173 .. 27721031
1859 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008249

Sequence Viewer

Length: 1218 bp
ATGAGCCCATATGGGAGTTCTCTGCAGCAAAACAAATCATTCTGCATAAGATCAAAGCACGTACCTACAGATCAAATGGCACCTTTGGCTTTCCTTCTGCTATTCCATCTCCTTGGTTTTTCAGTTGCTGAGATTTCGAGCAAAATTGGCATAAACTATGGGCAGATAGGGAACAATTTGCCATCTCCAAGCCTGTCCATCGAGCGCATCAAATCCATGAAAATAGGGCGTGTGAAGCTTTATGATGCCAACCCGGAAATTTTAAGACTCCTATCCGGAACCAATATCTCAGTCTCCATCATGGTCCCAAACAATGAAATCACTGGCATTGCCTCAGACCAATCCAAAGCAGATGAATGGGTCAGAAACAATGTCCTCCCCTACTACCCCAAAACCATGATCCGGTACCTCCTCGTAGGCAATGAAATCCTCAGCTATTTCTCGGACCAAGATCGCCAAATATGGCACGATCTAGTCCCGGCCATGACTAAAATCAAGTACTCTCTCAAAGCCAAAAATATCACTAACATCAAAATAGGTACCCCATTAGCAATGGACGTGGTTCAAACGAGTTTCCCACCATCAAGTGGCTCTTTCCGATCCGATATCTCGGAAACAGTCATGGTTCCCTTGCTCAGATTCTTGAACCGGACCAAGTCATTTTTCTTCATTGATGTGTACCCTTTTTTCCCATGGTCCTCAAACCCCAAAGACATTAGCCTAGACTATGCATTATTGAAAAACATTAGTAACAATAGTACTCTACAGTATACTGACCCAGGAAGTGGTTTGGTCTATACCAATCTTCTAGACCAAATGCTTGACTCCTTGATCTACACCATGACCAAGCTCGGCTACCCAAACATCCGGCTTTTGATAGCGGAGACTGGGTGGCCAAACTCCAGCGGTGAGCAAAACCAACCGGGGGCTAGTGTACACAATGCCGCCACATATAACCGAAATTTGGTACAAAAAATTGTTACTAAGCCAACAATTGGGACGCCAGCGAGGCCTGGTGTGGTGATACCAACCTTCATATTTGCATTGTATGATGAAAATCAGAAGGGTGGGCCTGGAACAGAGAGGCACTGGGGATTGTTGTACGCTGATGGAACTCCGGTTTATGATATTGACTTGACGGGGAAGCGATCGGCAAATGACTACGAACCATTGCCGGAGAAGAGGCACTTCATAAAGGGAATTCATTACGACGACTGA

Protein Analysis

406

Amino Acids

45.36

Weight (kDa)

8.81

Isoelectric Point (pI)

44.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 49 - 378 6e-98 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013919)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23770 AT4G14080
fragaria_vesca FvH4_4g13120
malus_domestica MD04G1019000.v1.1
prunus_persica Prupe.1G168300_v2.0.a1
pyrus_communis pycom04g01520
rosa_chinensis RchiOBHm_Chr4g0412901
rosa_laevigata RLG00000008249
rosa_multiflora Rmu_sc0005621.1_g000022 Rmu_sc0012279.1_g000004
rosa_roxburghii Rroxscaffold_5G00357140
rosa_rugosa Rorug04G0117400
rosa_samantha Rh4AG176300 Rh4BG176700 Rh4CG187300 Rh4DG173600
rosa_wichuraiana Rw4G014800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 405, 539
AccB1I GGYRCC 3 cut(s) 79, 405, 539
AccB7I CCANNNNNTGG 3 cut(s) 587, 785, 995
AccI GTMKAC 1 cut(s) 770
AccIII TCCGGA 1 cut(s) 275
AciI CCGC 3 cut(s) 881, 906, 945
AclWI GGATC 2 cut(s) 394, 594
AcoI YGGCCR 2 cut(s) 480, 893
AcsI RAATTY 3 cut(s) 258, 961, 1200
AcyI GRCGYC 1 cut(s) 1001
AfaI GTAC 9 cut(s) 63, 407, 500, 541, 680, 760, 936, 969, 1103
AfiI CCNNNNNNNGG 6 cut(s) 402, 587, 785, 925, 964, 995
AgsI TTSAA 3 cut(s) 566, 646, 739
AjiI CACGTC 1 cut(s) 559
AjnI CCWGG 3 cut(s) 778, 1012, 1072
AjuI GAANNNNNNNTTGG 2 cut(s) 647, 679
AluBI AGCT 3 cut(s) 238, 435, 850
AluI AGCT 3 cut(s) 238, 435, 850
Alw26I GTCTC 2 cut(s) 298, 878
AlwI GGATC 2 cut(s) 394, 594
AlwNI CAGNNNCTG 1 cut(s) 128
Aor13HI TCCGGA 1 cut(s) 275
AoxI GGCC 4 cut(s) 480, 893, 1010, 1070
ApeKI GCWGC 1 cut(s) 25
ApoI RAATTY 3 cut(s) 258, 961, 1200
Asp718I GGTACC 2 cut(s) 405, 539
AspLEI GCGC 1 cut(s) 207
AspS9I GGNCC 5 cut(s) 304, 445, 651, 696, 1070
AsuC2I CCSGG 3 cut(s) 254, 479, 924
AsuHPI GGTGA 2 cut(s) 920, 1033
AvaII GGWCC 4 cut(s) 304, 445, 651, 696
BalI TGGCCA 1 cut(s) 895
BanI GGYRCC 3 cut(s) 79, 405, 539
BanII GRGCYC 1 cut(s) 8
BbvCI CCTCAGC 1 cut(s) 431
BbvI GCAGC 1 cut(s) 37
BccI CCATC 6 cut(s) 114, 190, 206, 305, 589, 1103
BciT130I CCWGG 3 cut(s) 780, 1014, 1074
BcnI CCSGG 3 cut(s) 254, 479, 924
BcoDI GTCTC 2 cut(s) 298, 878
BfaI CTAG 4 cut(s) 473, 722, 809, 930
BfmI CTRYAG 3 cut(s) 23, 66, 764
BglI GCCNNNNNGGC 1 cut(s) 1009
BisI GCNGC 2 cut(s) 26, 945
BlsI GCNGC 2 cut(s) 27, 946
BmcAI AGTACT 2 cut(s) 500, 760
Bme1390I CCNGG 6 cut(s) 254, 479, 780, 924, 1014, 1074
Bme18I GGWCC 4 cut(s) 304, 445, 651, 696
BmgBI CACGTC 1 cut(s) 559
BmgT120I GGNCC 5 cut(s) 304, 445, 651, 696, 1070
BmiI GGNNCC 6 cut(s) 81, 280, 306, 407, 541, 627
BmrFI CCNGG 6 cut(s) 254, 479, 780, 924, 1014, 1074
BmrI ACTGGG 2 cut(s) 897, 1099
BmsI GCATC 2 cut(s) 216, 235
BmuI ACTGGG 2 cut(s) 897, 1099
BpmI CTGGAG 1 cut(s) 886
Bpu10I CCTNAGC 1 cut(s) 431
BpuMI CCSGG 3 cut(s) 254, 479, 924
BsaAI YACGTR 1 cut(s) 61
BsaBI GATNNNNATC 1 cut(s) 1056
BsaHI GRCGYC 1 cut(s) 1001
BsaJI CCNNGG 4 cut(s) 112, 692, 778, 923
BsaWI WCCGGW 4 cut(s) 275, 402, 648, 1117
BsaXI ACNNNNNCTCC 2 cut(s) 875, 905
Bsc4I CCNNNNNNNGG 6 cut(s) 402, 587, 785, 925, 964, 995
Bse1I ACTGG 3 cut(s) 328, 892, 1094
Bse3DI GCAATG 4 cut(s) 327, 427, 558, 1169
Bse8I GATNNNNATC 1 cut(s) 1056
BseAI TCCGGA 1 cut(s) 275
BseBI CCWGG 3 cut(s) 780, 1014, 1074
BseDI CCNNGG 4 cut(s) 112, 692, 778, 923
BseGI GGATG 1 cut(s) 864
BseJI GATNNNNATC 1 cut(s) 1056
BseLI CCNNNNNNNGG 6 cut(s) 402, 587, 785, 925, 964, 995
BseMI GCAATG 4 cut(s) 327, 427, 558, 1169
BseMII CTCAG 5 cut(s) 120, 303, 348, 445, 649
BseNI ACTGG 3 cut(s) 328, 892, 1094
BseRI GAGGAG 1 cut(s) 401
BseXI GCAGC 1 cut(s) 37
Bsh1285I CGRYCG 1 cut(s) 1151
BshFI GGCC 4 cut(s) 482, 895, 1012, 1072
BshNI GGYRCC 3 cut(s) 79, 405, 539
BsiEI CGRYCG 1 cut(s) 1151
BsiSI CCGG 9 cut(s) 254, 276, 403, 479, 649, 868, 923, 1118, 1175
BslFI GGGAC 3 cut(s) 290, 461, 1012
BslI CCNNNNNNNGG 6 cut(s) 402, 587, 785, 925, 964, 995
BsmAI GTCTC 2 cut(s) 298, 878
BsmFI GGGAC 3 cut(s) 290, 461, 1012
BsnI GGCC 4 cut(s) 482, 895, 1012, 1072
Bsp1286I GDGCHC 1 cut(s) 8
Bsp13I TCCGGA 1 cut(s) 275
Bsp1407I TGTACA 1 cut(s) 934
Bsp143I GATC 8 cut(s) 50, 70, 399, 451, 469, 599, 831, 1148
Bsp19I CCATGG 1 cut(s) 692
BspACI CCGC 3 cut(s) 881, 906, 945
BspANI GGCC 4 cut(s) 482, 895, 1012, 1072
BspCNI CTCAG 5 cut(s) 121, 302, 347, 444, 648
BspEI TCCGGA 1 cut(s) 275
BspLI GGNNCC 6 cut(s) 81, 280, 306, 407, 541, 627
BspMAI CTGCAG 1 cut(s) 27
BspPI GGATC 2 cut(s) 394, 594
BspT107I GGYRCC 3 cut(s) 79, 405, 539
BsrDI GCAATG 4 cut(s) 327, 427, 558, 1169
BsrGI TGTACA 1 cut(s) 934
BsrI ACTGG 3 cut(s) 328, 892, 1094
BssECI CCNNGG 4 cut(s) 112, 692, 778, 923
BssMI GATC 8 cut(s) 50, 70, 399, 451, 469, 599, 831, 1148
BssNAI GTATAC 1 cut(s) 771
BssNI GRCGYC 1 cut(s) 1001
BssT1I CCWWGG 2 cut(s) 112, 692
Bst1107I GTATAC 1 cut(s) 771
Bst2UI CCWGG 3 cut(s) 780, 1014, 1074
Bst4CI ACNGT 2 cut(s) 619, 768
Bst6I CTCTTC 1 cut(s) 1175
BstACI GRCGYC 1 cut(s) 1001
BstAUI TGTACA 1 cut(s) 934
BstBAI YACGTR 1 cut(s) 61
BstC8I GCNNGC 1 cut(s) 1005
BstDEI CTNAG 6 cut(s) 129, 289, 334, 431, 635, 984
BstDSI CCRYGG 1 cut(s) 692
BstF5I GGATG 1 cut(s) 864
BstHHI GCGC 1 cut(s) 207
BstKTI GATC 8 cut(s) 53, 73, 402, 454, 472, 602, 834, 1151
BstMAI GTCTC 2 cut(s) 298, 878
BstMBI GATC 8 cut(s) 50, 70, 399, 451, 469, 599, 831, 1148
BstMCI CGRYCG 1 cut(s) 1151
BstMWI GCNNNNNNNGC 4 cut(s) 86, 147, 235, 1009
BstNI CCWGG 3 cut(s) 780, 1014, 1074
BstSCI CCNGG 6 cut(s) 252, 477, 778, 922, 1012, 1072
BstSFI CTRYAG 3 cut(s) 23, 66, 764
BstV1I GCAGC 1 cut(s) 37
BstXI CCANNNNNNTGG 1 cut(s) 113
BstZ17I GTATAC 1 cut(s) 771
BsuRI GGCC 4 cut(s) 482, 895, 1012, 1072
BtgI CCRYGG 1 cut(s) 692
BtrI CACGTC 1 cut(s) 559
BtsCI GGATG 1 cut(s) 864
BtsIMutI CAGTG 2 cut(s) 321, 1087
Cac8I GCNNGC 1 cut(s) 1005
CaiI CAGNNNCTG 1 cut(s) 128
CfoI GCGC 1 cut(s) 207
Cfr13I GGNCC 5 cut(s) 304, 445, 651, 696, 1070
CseI GACGC 1 cut(s) 1009
Csp6I GTAC 9 cut(s) 62, 406, 499, 540, 679, 759, 935, 968, 1102
CspCI CAANNNNNGTGG 2 cut(s) 540, 575
CviAII CATG 7 cut(s) 217, 301, 397, 484, 622, 693, 841
CviQI GTAC 9 cut(s) 62, 406, 499, 540, 679, 759, 935, 968, 1102
DdeI CTNAG 6 cut(s) 129, 289, 334, 431, 635, 984
DpnI GATC 8 cut(s) 52, 72, 401, 453, 471, 601, 833, 1150
DpnII GATC 8 cut(s) 50, 70, 399, 451, 469, 599, 831, 1148
EaeI YGGCCR 2 cut(s) 480, 893
Eam1104I CTCTTC 1 cut(s) 1175
EarI CTCTTC 1 cut(s) 1175
Eco130I CCWWGG 2 cut(s) 112, 692
Eco147I AGGCCT 1 cut(s) 1012
Eco24I GRGCYC 1 cut(s) 8
Eco32I GATATC 1 cut(s) 607
Eco47I GGWCC 4 cut(s) 304, 445, 651, 696
EcoRI GAATTC 1 cut(s) 1200
EcoRII CCWGG 3 cut(s) 778, 1012, 1072
EcoRV GATATC 1 cut(s) 607
EcoT14I CCWWGG 2 cut(s) 112, 692
EcoT22I ATGCAT 1 cut(s) 733
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 2 cut(s) 112, 692
FaeI CATG 7 cut(s) 220, 304, 400, 487, 625, 696, 844
FalI AAGNNNNNCTT 4 cut(s) 577, 609, 1172, 1204
FaqI GGGAC 3 cut(s) 290, 461, 1012
FatI CATG 7 cut(s) 216, 300, 396, 483, 621, 692, 840
FauNDI CATATG 1 cut(s) 10
FblI GTMKAC 1 cut(s) 770
Fnu4HI GCNGC 2 cut(s) 26, 945
FokI GGATG 1 cut(s) 851
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 2 cut(s) 26, 945
FspBI CTAG 4 cut(s) 473, 722, 809, 930
GlaI GCGC 1 cut(s) 206
GluI GCNGC 2 cut(s) 26, 945
GsuI CTGGAG 1 cut(s) 886
HaeIII GGCC 4 cut(s) 482, 895, 1012, 1072
HapII CCGG 9 cut(s) 254, 276, 403, 479, 649, 868, 923, 1118, 1175
HgaI GACGC 1 cut(s) 1009
HhaI GCGC 1 cut(s) 207
Hin1I GRCGYC 1 cut(s) 1001
Hin1II CATG 7 cut(s) 220, 304, 400, 487, 625, 696, 844
Hin6I GCGC 1 cut(s) 205
HinP1I GCGC 1 cut(s) 205
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 3 cut(s) 267, 639, 824
HpaII CCGG 9 cut(s) 254, 276, 403, 479, 649, 868, 923, 1118, 1175
HphI GGTGA 2 cut(s) 920, 1033
Hpy166II GTNNAC 4 cut(s) 679, 771, 935, 937
Hpy188I TCNGA 8 cut(s) 337, 365, 445, 599, 604, 613, 638, 1062
Hpy188III TCNNGA 3 cut(s) 276, 643, 809
Hpy8I GTNNAC 4 cut(s) 679, 771, 935, 937
Hpy99I CGWCG 1 cut(s) 1214
HpyAV CCTTC 3 cut(s) 104, 1042, 1057
HpyCH4III ACNGT 2 cut(s) 619, 768
HpyCH4IV ACGT 2 cut(s) 60, 558
HpyCH4V TGCA 4 cut(s) 25, 45, 731, 1043
HpyF10VI GCNNNNNNNGC 4 cut(s) 86, 147, 235, 1009
HpyF3I CTNAG 6 cut(s) 129, 289, 334, 431, 635, 984
HpySE526I ACGT 2 cut(s) 60, 558
Hsp92I GRCGYC 1 cut(s) 1001
Hsp92II CATG 7 cut(s) 220, 304, 400, 487, 625, 696, 844
HspAI GCGC 1 cut(s) 205
Kpn2I TCCGGA 1 cut(s) 275
KpnI GGTACC 2 cut(s) 409, 543
Kzo9I GATC 8 cut(s) 50, 70, 399, 451, 469, 599, 831, 1148
Lsp1109I GCAGC 1 cut(s) 37
LweI GCATC 2 cut(s) 216, 235
MaeI CTAG 4 cut(s) 473, 722, 809, 930
MaeII ACGT 2 cut(s) 60, 558
MaeIII GTNAC 2 cut(s) 749, 979
MalI GATC 8 cut(s) 52, 72, 401, 453, 471, 601, 833, 1150
MboI GATC 8 cut(s) 50, 70, 399, 451, 469, 599, 831, 1148
MboII GAAGA 3 cut(s) 658, 797, 1192
MfeI CAATTG 1 cut(s) 993
MhlI GDGCHC 1 cut(s) 8
MlsI TGGCCA 1 cut(s) 895
MluCI AATT 7 cut(s) 144, 175, 258, 961, 975, 993, 1200
MluNI TGGCCA 1 cut(s) 895
MlyI GAGTC 2 cut(s) 261, 818
MnlI CCTC 9 cut(s) 343, 386, 419, 422, 440, 709, 1002, 1077, 1176
Mox20I TGGCCA 1 cut(s) 895
Mph1103I ATGCAT 1 cut(s) 733
MroI TCCGGA 1 cut(s) 275
MscI TGGCCA 1 cut(s) 895
MseI TTAA 1 cut(s) 263
MslI CAYNNNNRTG 1 cut(s) 674
Msp20I TGGCCA 1 cut(s) 895
MspA1I CMGCKG 1 cut(s) 906
MspI CCGG 9 cut(s) 254, 276, 403, 479, 649, 868, 923, 1118, 1175
MspR9I CCNGG 6 cut(s) 254, 479, 780, 924, 1014, 1074
MunI CAATTG 1 cut(s) 993
MvaI CCWGG 3 cut(s) 780, 1014, 1074
MwoI GCNNNNNNNGC 4 cut(s) 86, 147, 235, 1009
NciI CCSGG 3 cut(s) 254, 479, 924
NcoI CCATGG 1 cut(s) 692
NdeI CATATG 1 cut(s) 10
NdeII GATC 8 cut(s) 50, 70, 399, 451, 469, 599, 831, 1148
NlaIII CATG 7 cut(s) 220, 304, 400, 487, 625, 696, 844
NlaIV GGNNCC 6 cut(s) 81, 280, 306, 407, 541, 627
NmeAIII GCCGAG 1 cut(s) 831
NsiI ATGCAT 1 cut(s) 733
PceI AGGCCT 1 cut(s) 1012
PfeI GAWTC 1 cut(s) 639
PflFI GACNNNGTC 1 cut(s) 655
PflMI CCANNNNNTGG 3 cut(s) 587, 785, 995
PkrI GCNGC 2 cut(s) 27, 946
Ple19I CGATCG 1 cut(s) 1151
PleI GAGTC 2 cut(s) 261, 818
PpsI GAGTC 2 cut(s) 261, 818
Ppu21I YACGTR 1 cut(s) 61
Psp6I CCWGG 3 cut(s) 778, 1012, 1072
PspGI CCWGG 3 cut(s) 778, 1012, 1072
PspN4I GGNNCC 6 cut(s) 81, 280, 306, 407, 541, 627
PspPI GGNCC 5 cut(s) 304, 445, 651, 696, 1070
PstI CTGCAG 1 cut(s) 27
PstNI CAGNNNCTG 1 cut(s) 128
PsyI GACNNNGTC 1 cut(s) 655
PvuI CGATCG 1 cut(s) 1151
RsaI GTAC 9 cut(s) 63, 407, 500, 541, 680, 760, 936, 969, 1103
RsaNI GTAC 9 cut(s) 62, 406, 499, 540, 679, 759, 935, 968, 1102
RseI CAYNNNNRTG 1 cut(s) 674
SaqAI TTAA 1 cut(s) 263
SatI GCNGC 2 cut(s) 26, 945
Sau3AI GATC 8 cut(s) 50, 70, 399, 451, 469, 599, 831, 1148
Sau96I GGNCC 5 cut(s) 304, 445, 651, 696, 1070
ScaI AGTACT 2 cut(s) 500, 760
SchI GAGTC 2 cut(s) 261, 818
ScrFI CCNGG 6 cut(s) 254, 479, 780, 924, 1014, 1074
SduI GDGCHC 1 cut(s) 8
SfaNI GCATC 2 cut(s) 216, 235
SfcI CTRYAG 3 cut(s) 23, 66, 764
SinI GGWCC 4 cut(s) 304, 445, 651, 696
SmiMI CAYNNNNRTG 1 cut(s) 674
Sse9I AATT 7 cut(s) 144, 175, 258, 961, 975, 993, 1200
SseBI AGGCCT 1 cut(s) 1012
SsiI CCGC 3 cut(s) 881, 906, 945
SspMI CTAG 4 cut(s) 473, 722, 809, 930
StuI AGGCCT 1 cut(s) 1012
StyD4I CCNGG 6 cut(s) 252, 477, 778, 922, 1012, 1072
StyI CCWWGG 2 cut(s) 112, 692
TaaI ACNGT 2 cut(s) 619, 768
TaiI ACGT 2 cut(s) 63, 561
TaqI TCGA 2 cut(s) 137, 201
TasI AATT 7 cut(s) 144, 175, 258, 961, 975, 993, 1200
TatI WGTACW 3 cut(s) 498, 758, 934
TauI GCSGC 1 cut(s) 947
TfiI GAWTC 1 cut(s) 639
Tru1I TTAA 1 cut(s) 263
Tru9I TTAA 1 cut(s) 263
TscAI CASTG 2 cut(s) 328, 1094
TseI GCWGC 1 cut(s) 25
TspDTI ATGAA 9 cut(s) 233, 330, 369, 438, 658, 1024, 1068, 1180, 1193
TspRI CASTG 2 cut(s) 328, 1094
Tth111I GACNNNGTC 1 cut(s) 655
Van91I CCANNNNNTGG 3 cut(s) 587, 785, 995
VpaK11BI GGWCC 4 cut(s) 304, 445, 651, 696
XapI RAATTY 3 cut(s) 258, 961, 1200
XbaI TCTAGA 1 cut(s) 808
XmiI GTMKAC 1 cut(s) 770
XspI CTAG 4 cut(s) 473, 722, 809, 930
ZrmI AGTACT 2 cut(s) 500, 760
Zsp2I ATGCAT 1 cut(s) 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.