RchiOBHm_Chr4g0412901

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
36902579 .. 36904285
1707 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38351

Sequence Viewer

Length: 1272 bp
ATGCACACATTCTGCATTCCAATATTAACATCTTCTGTGTTCACAGTATATCTAGATGAGCCCGTATGGGAGTTCTCTGCAGCAGAACAAATCATTCTGCATAAGATCAAAGCACCTACAGATCAAATGGCACCTTTGGCTTTCCTTCTGCTATTCCATCTCCTTGGTTTTCAGGTATTTGCTGAGATTTCGAGCAAAATTGGCATAAACTATGGGCAGGTAGGGAACAATTTGCCTTCTCCAAGCCGGTCCATCGAGCGCATCAAATCCATGAAAATAGGGCGTGTGAAGCTCTATGATGCCAACCCGGAAATTTTAAGACTCCTATCCGGAACCAATATCTCAGTCTCCATCATGGTCCCAAACAATGAAATCACTGGCATTGCCTCAGACCAATCCAAAGCAGATGAATGGGTCAGAAACAATGTCCTCCCCTACTACCCCAAAACCATGATCCGGTACCTCCTCGTAGGCAATGAAATCCTCAGCTATTTCTCGGACCAAGATCGCCAAATATGGCACGATCTAGTCCCGGCCATGACTAAAATCAAGTATTCTCTCAAATCCAAAAATATCACTAACATCAAAATAGGTACCCCATTAGCAATGGACGTGGTTCAAACGAGTTTCCCACCATCAAGTGGCTCTTTCCGATCCGATATCTCGGAAACAGTCATGGTTCCCTTGGTCAGATTCTTGAACCGGACCAAGTCATTTTTCTTCATTGATGTGTACCCTTTTTTCCCATGGTCCTCAAACCCCAAAGACATTAGCCTAGACTATGCATTATTGAAAAACATTAGTAACAACAGTACTCTACGGTATACTGACCCAGGAAGTGGTTTGGTCTATACCAATCTTCTGGACCAAATGCTTGACTCCTTGATCTTCGCCATGACCAAGCTCGGCTACCCAAACATCCGGCTTTTGATAGCGGAGACTGGGTGGCCAAACTCCAGCAGTGAGCAAAACCAACCGGGGGCTAATGTACACAATGCCGCCACATACAACCGAAATTTGGTACAAAAAATTGTTACTAAGCCAACAATTGGGACACCAGCGAGGCCTGGTGTAGTGATACCAACCTTCATATTTGCATTGTATGATGAAAATCAGAAGGGTGGGCCTGGAACAGAGAGGCACTGGGGATTGTTGTACGCTGATGGAACTCCGGTTTATGATATTGACTTGACGGGGAAGCGATCGGCAAATGACTACGAACCATTGCCGGAGAAGAGGCACTTCATAAAGGGAATTCATTACGACGACTGA

Protein Analysis

423

Amino Acids

47.6

Weight (kDa)

7.76

Isoelectric Point (pI)

43.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 67 - 396 3.2e-99 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0013919)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23770 AT4G14080
fragaria_vesca FvH4_4g13120
malus_domestica MD04G1019000.v1.1
prunus_persica Prupe.1G168300_v2.0.a1
pyrus_communis pycom04g01520
rosa_chinensis RchiOBHm_Chr4g0412901
rosa_laevigata RLG00000008249
rosa_multiflora Rmu_sc0005621.1_g000022 Rmu_sc0012279.1_g000004
rosa_roxburghii Rroxscaffold_5G00357140
rosa_rugosa Rorug04G0117400
rosa_samantha Rh4AG176300 Rh4BG176700 Rh4CG187300 Rh4DG173600
rosa_wichuraiana Rw4G014800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 208
Acc65I GGTACC 2 cut(s) 459, 593
AccB1I GGYRCC 3 cut(s) 130, 459, 593
AccB7I CCANNNNNTGG 3 cut(s) 641, 839, 1049
AccI GTMKAC 1 cut(s) 824
AccIII TCCGGA 1 cut(s) 329
AciI CCGC 2 cut(s) 935, 999
AclWI GGATC 2 cut(s) 448, 648
AcoI YGGCCR 2 cut(s) 534, 947
AcsI RAATTY 3 cut(s) 312, 1015, 1254
AfaI GTAC 7 cut(s) 461, 595, 734, 814, 990, 1023, 1157
AfiI CCNNNNNNNGG 6 cut(s) 456, 641, 839, 979, 1018, 1049
AgsI TTSAA 3 cut(s) 620, 700, 793
AjiI CACGTC 1 cut(s) 613
AjnI CCWGG 3 cut(s) 832, 1066, 1126
AjuI GAANNNNNNNTTGG 2 cut(s) 701, 733
AluBI AGCT 3 cut(s) 292, 489, 904
AluI AGCT 3 cut(s) 292, 489, 904
Alw26I GTCTC 2 cut(s) 352, 932
AlwI GGATC 2 cut(s) 448, 648
Aor13HI TCCGGA 1 cut(s) 329
AoxI GGCC 4 cut(s) 534, 947, 1064, 1124
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 3 cut(s) 312, 1015, 1254
Asp718I GGTACC 2 cut(s) 459, 593
AspLEI GCGC 1 cut(s) 261
AspS9I GGNCC 7 cut(s) 249, 358, 499, 705, 750, 865, 1124
AsuC2I CCSGG 3 cut(s) 308, 533, 978
AvaII GGWCC 6 cut(s) 249, 358, 499, 705, 750, 865
BalI TGGCCA 1 cut(s) 949
BanI GGYRCC 3 cut(s) 130, 459, 593
BanII GRGCYC 1 cut(s) 63
BbvCI CCTCAGC 1 cut(s) 485
BbvI GCAGC 1 cut(s) 92
BccI CCATC 5 cut(s) 165, 260, 359, 643, 1157
BciT130I CCWGG 3 cut(s) 834, 1068, 1128
BcnI CCSGG 3 cut(s) 308, 533, 978
BcoDI GTCTC 2 cut(s) 352, 932
BfaI CTAG 3 cut(s) 53, 527, 776
BfmI CTRYAG 2 cut(s) 78, 117
BfuAI ACCTGC 1 cut(s) 208
BisI GCNGC 2 cut(s) 81, 999
BlsI GCNGC 2 cut(s) 82, 1000
BmcAI AGTACT 1 cut(s) 814
Bme1390I CCNGG 6 cut(s) 308, 533, 834, 978, 1068, 1128
Bme18I GGWCC 6 cut(s) 249, 358, 499, 705, 750, 865
BmgBI CACGTC 1 cut(s) 613
BmgT120I GGNCC 7 cut(s) 249, 358, 499, 705, 750, 865, 1124
BmiI GGNNCC 6 cut(s) 132, 334, 360, 461, 595, 681
BmrFI CCNGG 6 cut(s) 308, 533, 834, 978, 1068, 1128
BmrI ACTGGG 2 cut(s) 951, 1153
BmsI GCATC 2 cut(s) 270, 289
BmuI ACTGGG 2 cut(s) 951, 1153
BpmI CTGGAG 1 cut(s) 940
Bpu10I CCTNAGC 1 cut(s) 485
BpuMI CCSGG 3 cut(s) 308, 533, 978
BsaBI GATNNNNATC 1 cut(s) 1110
BsaJI CCNNGG 5 cut(s) 163, 684, 746, 832, 977
BsaWI WCCGGW 4 cut(s) 329, 456, 702, 1171
BsaXI ACNNNNNCTCC 2 cut(s) 929, 959
Bsc4I CCNNNNNNNGG 6 cut(s) 456, 641, 839, 979, 1018, 1049
Bse118I RCCGGY 1 cut(s) 246
Bse1I ACTGG 3 cut(s) 382, 946, 1148
Bse3DI GCAATG 4 cut(s) 381, 481, 612, 1223
Bse8I GATNNNNATC 1 cut(s) 1110
BseAI TCCGGA 1 cut(s) 329
BseBI CCWGG 3 cut(s) 834, 1068, 1128
BseDI CCNNGG 5 cut(s) 163, 684, 746, 832, 977
BseGI GGATG 1 cut(s) 918
BseJI GATNNNNATC 1 cut(s) 1110
BseLI CCNNNNNNNGG 6 cut(s) 456, 641, 839, 979, 1018, 1049
BseMI GCAATG 4 cut(s) 381, 481, 612, 1223
BseMII CTCAG 4 cut(s) 174, 357, 402, 499
BseNI ACTGG 3 cut(s) 382, 946, 1148
BseRI GAGGAG 1 cut(s) 455
BseXI GCAGC 1 cut(s) 92
Bsh1285I CGRYCG 1 cut(s) 1205
BshFI GGCC 4 cut(s) 536, 949, 1066, 1126
BshNI GGYRCC 3 cut(s) 130, 459, 593
BsiEI CGRYCG 1 cut(s) 1205
BslFI GGGAC 3 cut(s) 344, 515, 1066
BslI CCNNNNNNNGG 6 cut(s) 456, 641, 839, 979, 1018, 1049
BsmAI GTCTC 2 cut(s) 352, 932
BsmFI GGGAC 3 cut(s) 344, 515, 1066
BsmI GAATGC 1 cut(s) 15
BsnI GGCC 4 cut(s) 536, 949, 1066, 1126
Bsp1286I GDGCHC 1 cut(s) 63
Bsp13I TCCGGA 1 cut(s) 329
Bsp1407I TGTACA 1 cut(s) 988
Bsp143I GATC 8 cut(s) 105, 121, 453, 505, 523, 653, 885, 1202
Bsp19I CCATGG 1 cut(s) 746
BspACI CCGC 2 cut(s) 935, 999
BspANI GGCC 4 cut(s) 536, 949, 1066, 1126
BspCNI CTCAG 4 cut(s) 175, 356, 401, 498
BspEI TCCGGA 1 cut(s) 329
BspLI GGNNCC 6 cut(s) 132, 334, 360, 461, 595, 681
BspMAI CTGCAG 1 cut(s) 82
BspMI ACCTGC 1 cut(s) 208
BspPI GGATC 2 cut(s) 448, 648
BspT107I GGYRCC 3 cut(s) 130, 459, 593
BsrDI GCAATG 4 cut(s) 381, 481, 612, 1223
BsrFI RCCGGY 1 cut(s) 246
BsrGI TGTACA 1 cut(s) 988
BsrI ACTGG 3 cut(s) 382, 946, 1148
BssAI RCCGGY 1 cut(s) 246
BssECI CCNNGG 5 cut(s) 163, 684, 746, 832, 977
BssMI GATC 8 cut(s) 105, 121, 453, 505, 523, 653, 885, 1202
BssNAI GTATAC 1 cut(s) 825
BssT1I CCWWGG 3 cut(s) 163, 684, 746
Bst1107I GTATAC 1 cut(s) 825
Bst2UI CCWGG 3 cut(s) 834, 1068, 1128
Bst4CI ACNGT 4 cut(s) 46, 673, 812, 822
Bst6I CTCTTC 1 cut(s) 1229
BstAUI TGTACA 1 cut(s) 988
BstDEI CTNAG 5 cut(s) 183, 343, 388, 485, 1038
BstDSI CCRYGG 1 cut(s) 746
BstF5I GGATG 1 cut(s) 918
BstHHI GCGC 1 cut(s) 261
BstKTI GATC 8 cut(s) 108, 124, 456, 508, 526, 656, 888, 1205
BstMAI GTCTC 2 cut(s) 352, 932
BstMBI GATC 8 cut(s) 105, 121, 453, 505, 523, 653, 885, 1202
BstMCI CGRYCG 1 cut(s) 1205
BstMWI GCNNNNNNNGC 3 cut(s) 137, 201, 289
BstNI CCWGG 3 cut(s) 834, 1068, 1128
BstSCI CCNGG 6 cut(s) 306, 531, 832, 976, 1066, 1126
BstSFI CTRYAG 2 cut(s) 78, 117
BstV1I GCAGC 1 cut(s) 92
BstXI CCANNNNNNTGG 2 cut(s) 164, 862
BstZ17I GTATAC 1 cut(s) 825
BsuRI GGCC 4 cut(s) 536, 949, 1066, 1126
BtgI CCRYGG 1 cut(s) 746
BtrI CACGTC 1 cut(s) 613
BtsCI GGATG 1 cut(s) 918
BtsI GCAGTG 1 cut(s) 967
BtsIMutI CAGTG 3 cut(s) 375, 967, 1141
BveI ACCTGC 1 cut(s) 208
CfoI GCGC 1 cut(s) 261
Cfr10I RCCGGY 1 cut(s) 246
Cfr13I GGNCC 7 cut(s) 249, 358, 499, 705, 750, 865, 1124
Csp6I GTAC 7 cut(s) 460, 594, 733, 813, 989, 1022, 1156
CspCI CAANNNNNGTGG 2 cut(s) 594, 629
CviAII CATG 7 cut(s) 271, 355, 451, 538, 676, 747, 895
CviQI GTAC 7 cut(s) 460, 594, 733, 813, 989, 1022, 1156
DdeI CTNAG 5 cut(s) 183, 343, 388, 485, 1038
DpnI GATC 8 cut(s) 107, 123, 455, 507, 525, 655, 887, 1204
DpnII GATC 8 cut(s) 105, 121, 453, 505, 523, 653, 885, 1202
EaeI YGGCCR 2 cut(s) 534, 947
Eam1104I CTCTTC 1 cut(s) 1229
EarI CTCTTC 1 cut(s) 1229
Eco130I CCWWGG 3 cut(s) 163, 684, 746
Eco147I AGGCCT 1 cut(s) 1066
Eco24I GRGCYC 1 cut(s) 63
Eco32I GATATC 1 cut(s) 661
Eco47I GGWCC 6 cut(s) 249, 358, 499, 705, 750, 865
EcoRI GAATTC 1 cut(s) 1254
EcoRII CCWGG 3 cut(s) 832, 1066, 1126
EcoRV GATATC 1 cut(s) 661
EcoT14I CCWWGG 3 cut(s) 163, 684, 746
EcoT22I ATGCAT 1 cut(s) 787
EcoT38I GRGCYC 1 cut(s) 63
ErhI CCWWGG 3 cut(s) 163, 684, 746
FaeI CATG 7 cut(s) 274, 358, 454, 541, 679, 750, 898
FalI AAGNNNNNCTT 4 cut(s) 631, 663, 1226, 1258
FaqI GGGAC 3 cut(s) 344, 515, 1066
FatI CATG 7 cut(s) 270, 354, 450, 537, 675, 746, 894
FblI GTMKAC 1 cut(s) 824
Fnu4HI GCNGC 2 cut(s) 81, 999
FokI GGATG 1 cut(s) 905
FriOI GRGCYC 1 cut(s) 63
Fsp4HI GCNGC 2 cut(s) 81, 999
FspBI CTAG 3 cut(s) 53, 527, 776
GlaI GCGC 1 cut(s) 260
GluI GCNGC 2 cut(s) 81, 999
GsuI CTGGAG 1 cut(s) 940
HaeIII GGCC 4 cut(s) 536, 949, 1066, 1126
HhaI GCGC 1 cut(s) 261
Hin1II CATG 7 cut(s) 274, 358, 454, 541, 679, 750, 898
Hin6I GCGC 1 cut(s) 259
HinP1I GCGC 1 cut(s) 259
HinfI GANTC 3 cut(s) 321, 693, 878
Hpy166II GTNNAC 4 cut(s) 42, 733, 825, 991
Hpy188I TCNGA 8 cut(s) 391, 419, 499, 653, 658, 667, 692, 1116
Hpy188III TCNNGA 4 cut(s) 53, 330, 697, 863
Hpy8I GTNNAC 4 cut(s) 42, 733, 825, 991
Hpy99I CGWCG 1 cut(s) 1268
HpyAV CCTTC 4 cut(s) 155, 246, 1096, 1111
HpyCH4III ACNGT 4 cut(s) 46, 673, 812, 822
HpyCH4IV ACGT 1 cut(s) 612
HpyCH4V TGCA 6 cut(s) 4, 15, 80, 100, 785, 1097
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 201, 289
HpyF3I CTNAG 5 cut(s) 183, 343, 388, 485, 1038
HpySE526I ACGT 1 cut(s) 612
Hsp92II CATG 7 cut(s) 274, 358, 454, 541, 679, 750, 898
HspAI GCGC 1 cut(s) 259
Kpn2I TCCGGA 1 cut(s) 329
KpnI GGTACC 2 cut(s) 463, 597
Kzo9I GATC 8 cut(s) 105, 121, 453, 505, 523, 653, 885, 1202
Lsp1109I GCAGC 1 cut(s) 92
LweI GCATC 2 cut(s) 270, 289
MaeI CTAG 3 cut(s) 53, 527, 776
MaeII ACGT 1 cut(s) 612
MaeIII GTNAC 2 cut(s) 803, 1033
MalI GATC 8 cut(s) 107, 123, 455, 507, 525, 655, 887, 1204
MboI GATC 8 cut(s) 105, 121, 453, 505, 523, 653, 885, 1202
MboII GAAGA 5 cut(s) 24, 712, 851, 880, 1246
MfeI CAATTG 1 cut(s) 1047
MhlI GDGCHC 1 cut(s) 63
MlsI TGGCCA 1 cut(s) 949
MluCI AATT 7 cut(s) 198, 229, 312, 1015, 1029, 1047, 1254
MluNI TGGCCA 1 cut(s) 949
MlyI GAGTC 2 cut(s) 315, 872
MnlI CCTC 9 cut(s) 397, 440, 473, 476, 494, 763, 1056, 1131, 1230
Mox20I TGGCCA 1 cut(s) 949
Mph1103I ATGCAT 1 cut(s) 787
MroI TCCGGA 1 cut(s) 329
MscI TGGCCA 1 cut(s) 949
MseI TTAA 2 cut(s) 26, 317
MslI CAYNNNNRTG 1 cut(s) 728
Msp20I TGGCCA 1 cut(s) 949
MspR9I CCNGG 6 cut(s) 308, 533, 834, 978, 1068, 1128
MunI CAATTG 1 cut(s) 1047
Mva1269I GAATGC 1 cut(s) 15
MvaI CCWGG 3 cut(s) 834, 1068, 1128
MwoI GCNNNNNNNGC 3 cut(s) 137, 201, 289
NciI CCSGG 3 cut(s) 308, 533, 978
NcoI CCATGG 1 cut(s) 746
NdeII GATC 8 cut(s) 105, 121, 453, 505, 523, 653, 885, 1202
NlaIII CATG 7 cut(s) 274, 358, 454, 541, 679, 750, 898
NlaIV GGNNCC 6 cut(s) 132, 334, 360, 461, 595, 681
NmeAIII GCCGAG 1 cut(s) 885
NsiI ATGCAT 1 cut(s) 787
PceI AGGCCT 1 cut(s) 1066
PctI GAATGC 1 cut(s) 15
PfeI GAWTC 1 cut(s) 693
PflFI GACNNNGTC 1 cut(s) 709
PflMI CCANNNNNTGG 3 cut(s) 641, 839, 1049
PkrI GCNGC 2 cut(s) 82, 1000
Ple19I CGATCG 1 cut(s) 1205
PleI GAGTC 2 cut(s) 315, 872
PpsI GAGTC 2 cut(s) 315, 872
Psp6I CCWGG 3 cut(s) 832, 1066, 1126
PspGI CCWGG 3 cut(s) 832, 1066, 1126
PspN4I GGNNCC 6 cut(s) 132, 334, 360, 461, 595, 681
PspPI GGNCC 7 cut(s) 249, 358, 499, 705, 750, 865, 1124
PstI CTGCAG 1 cut(s) 82
PsyI GACNNNGTC 1 cut(s) 709
PvuI CGATCG 1 cut(s) 1205
RsaI GTAC 7 cut(s) 461, 595, 734, 814, 990, 1023, 1157
RsaNI GTAC 7 cut(s) 460, 594, 733, 813, 989, 1022, 1156
RseI CAYNNNNRTG 1 cut(s) 728
SaqAI TTAA 2 cut(s) 26, 317
SatI GCNGC 2 cut(s) 81, 999
Sau3AI GATC 8 cut(s) 105, 121, 453, 505, 523, 653, 885, 1202
Sau96I GGNCC 7 cut(s) 249, 358, 499, 705, 750, 865, 1124
ScaI AGTACT 1 cut(s) 814
SchI GAGTC 2 cut(s) 315, 872
ScrFI CCNGG 6 cut(s) 308, 533, 834, 978, 1068, 1128
SduI GDGCHC 1 cut(s) 63
SfaNI GCATC 2 cut(s) 270, 289
SfcI CTRYAG 2 cut(s) 78, 117
SinI GGWCC 6 cut(s) 249, 358, 499, 705, 750, 865
SmiMI CAYNNNNRTG 1 cut(s) 728
Sse9I AATT 7 cut(s) 198, 229, 312, 1015, 1029, 1047, 1254
SseBI AGGCCT 1 cut(s) 1066
SsiI CCGC 2 cut(s) 935, 999
SspI AATATT 1 cut(s) 24
SspMI CTAG 3 cut(s) 53, 527, 776
StuI AGGCCT 1 cut(s) 1066
StyD4I CCNGG 6 cut(s) 306, 531, 832, 976, 1066, 1126
StyI CCWWGG 3 cut(s) 163, 684, 746
TaaI ACNGT 4 cut(s) 46, 673, 812, 822
TaiI ACGT 1 cut(s) 615
TaqI TCGA 2 cut(s) 191, 255
TasI AATT 7 cut(s) 198, 229, 312, 1015, 1029, 1047, 1254
TatI WGTACW 2 cut(s) 812, 988
TauI GCSGC 1 cut(s) 1001
TfiI GAWTC 1 cut(s) 693
Tru1I TTAA 2 cut(s) 26, 317
Tru9I TTAA 2 cut(s) 26, 317
TscAI CASTG 3 cut(s) 382, 967, 1148
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 9 cut(s) 287, 384, 423, 492, 712, 1078, 1122, 1234, 1247
TspRI CASTG 3 cut(s) 382, 967, 1148
Tth111I GACNNNGTC 1 cut(s) 709
Van91I CCANNNNNTGG 3 cut(s) 641, 839, 1049
VpaK11BI GGWCC 6 cut(s) 249, 358, 499, 705, 750, 865
XapI RAATTY 3 cut(s) 312, 1015, 1254
XbaI TCTAGA 1 cut(s) 52
XmiI GTMKAC 1 cut(s) 824
XspI CTAG 3 cut(s) 53, 527, 776
ZrmI AGTACT 1 cut(s) 814
Zsp2I ATGCAT 1 cut(s) 787
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.