Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013146

Physical Location & Seq

Genomic Coordinates Reverse (-)

8675905 .. 8678286

Gene Structure 2382 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G24010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGTCATTCGCCGAGGAATTTGAAGCTAATCTTGTTTCGCTGGCCCATGTTTTGCAGAAGAAATATGCTCTCCTGCGCGATTTGGATAAAAGTTTGCAAGAAAACCAACGACAAAATGAACAACGCTGTGAAAAAGAAATAGAGGATATAAGAAGGGGCAGAGCTGGAAATATCACACCTAATACCTCTCTTACAAAGTTCTCAGAGGAAGCACTTGATGAACAGAAACACAGTGTCCGGATTGCTGACGAGAAAGTCACACTGGCTATGCAGGCATATGATCTGGTGGATATGCATGTTCAGCAACTTGACCAGTATATGAAAAAATCCGACGAAGTGATCCGCAAAGAGAAAGAAGCTGCCGCTGCGACATTAGAACTGGAGAACAACGGGAAAGCCGGGAATGCTGGTGAAGGTGGAAGAGGAGGGCGAAAAAAGACAAGGCTAGCAACAGCAGCGTCAACAGCAGCAGCATCAACTGGGATGACTTCAAGTAATATGGATCTGGATCTGCCTGTGGATCCAAACGAACCAACTTACTGCATCTGCAACCAAGTTAGCTTTGGCGAGATGGTTGCGTGTGACAACAATGCGTGCAAGATTGAGTGGTTCCATTTCGGTTGCGTCGGTCTGAAAGAACAACCCAAGGGGAAATGGTACTGCCCGGAGTGTGCTACAGTAAAGAAGAGCAGGAAAGGTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0035064 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0140030 GO:0140034

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ING

Protein Analysis

234

Amino Acids

26.1

Weight (kDa)

6.16

Isoelectric Point (pI)

41.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ING	PF12998	5 - 109	2.1e-20	Inhibitor of growth proteins N-terminal histone-binding
PHD-1st_NSD	PF23011	187 - 225	2.1e-06	Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24010
fragaria_vesca	FvH4_4g05430 FvH4_4g05430 FvH4_4g05430 FvH4_4g05430
malus_domestica	MD13G1230600.v1.1 MD13G1230700.v1.1
prunus_persica	Prupe.1G056400_v2.0.a1
pyrus_communis	pycom13g20300
rosa_chinensis	RchiOBHm_Chr4g0396581
rosa_laevigata	RLG00000009519
rosa_roxburghii	Rroxscaffold_5G00341430
rosa_rugosa	Rorug03G0348800 Rorug03G0348900
rosa_samantha	Rh4AG070500 Rh4BG068400 Rh4DG065500
rosa_wichuraiana	Rw4G005620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	254
AccII	CGCG	1 cut(s)	78
AccIII	TCCGGA	1 cut(s)	237
AciI	CCGC	2 cut(s)	343, 363
AclWI	GGATC	5 cut(s)	334, 510, 515, 516, 528
AcsI	RAATTY	1 cut(s)	17
AfaI	GTAC	1 cut(s)	659
AgsI	TTSAA	2 cut(s)	23, 492
AluBI	AGCT	4 cut(s)	26, 164, 359, 561
AluI	AGCT	4 cut(s)	26, 164, 359, 561
AlwI	GGATC	5 cut(s)	334, 510, 515, 516, 528
Aor13HI	TCCGGA	1 cut(s)	237
AoxI	GGCC	1 cut(s)	42
ApeKI	GCWGC	5 cut(s)	359, 365, 455, 467, 470
ApoI	RAATTY	1 cut(s)	17
AspLEI	GCGC	1 cut(s)	78
AspS9I	GGNCC	1 cut(s)	43
AsuC2I	CCSGG	2 cut(s)	400, 665
AsuHPI	GGTGA	1 cut(s)	422
AsuNHI	GCTAGC	1 cut(s)	445
BamHI	GGATCC	1 cut(s)	520
BbvI	GCAGC	5 cut(s)	346, 352, 467, 479, 482
BccI	CCATC	1 cut(s)	565
BcgI	CGANNNNNNTGC	2 cut(s)	557, 591
BcnI	CCSGG	2 cut(s)	400, 665
BfaI	CTAG	1 cut(s)	446
BfmI	CTRYAG	1 cut(s)	675
BisI	GCNGC	6 cut(s)	360, 363, 366, 456, 468, 471
BlsI	GCNGC	6 cut(s)	361, 364, 367, 457, 469, 472
Bme1390I	CCNGG	2 cut(s)	400, 665
BmgT120I	GGNCC	1 cut(s)	43
BmiI	GGNNCC	2 cut(s)	522, 611
BmrFI	CCNGG	2 cut(s)	400, 665
BmrI	ACTGGG	1 cut(s)	489
BmsI	GCATC	2 cut(s)	482, 552
BmtI	GCTAGC	1 cut(s)	449
BmuI	ACTGGG	1 cut(s)	489
BpmI	CTGGAG	1 cut(s)	401
BpuMI	CCSGG	2 cut(s)	400, 665
BsaBI	GATNNNNATC	1 cut(s)	507
BsaJI	CCNNGG	2 cut(s)	12, 645
BsaWI	WCCGGW	1 cut(s)	237
Bse1I	ACTGG	4 cut(s)	267, 313, 384, 484
Bse8I	GATNNNNATC	1 cut(s)	507
BseAI	TCCGGA	1 cut(s)	237
BseDI	CCNNGG	2 cut(s)	12, 645
BseGI	GGATG	1 cut(s)	489
BseJI	GATNNNNATC	1 cut(s)	507
BseMII	CTCAG	1 cut(s)	216
BseNI	ACTGG	4 cut(s)	267, 313, 384, 484
BseRI	GAGGAG	1 cut(s)	438
BseXI	GCAGC	5 cut(s)	346, 352, 467, 479, 482
Bsh1236I	CGCG	1 cut(s)	78
BshFI	GGCC	1 cut(s)	44
BsiSI	CCGG	3 cut(s)	238, 399, 665
BsmI	GAATGC	1 cut(s)	409
BsnI	GGCC	1 cut(s)	44
Bsp13I	TCCGGA	1 cut(s)	237
Bsp143I	GATC	5 cut(s)	280, 339, 502, 508, 520
BspACI	CCGC	2 cut(s)	343, 363
BspANI	GGCC	1 cut(s)	44
BspCNI	CTCAG	1 cut(s)	215
BspEI	TCCGGA	1 cut(s)	237
BspFNI	CGCG	1 cut(s)	78
BspLI	GGNNCC	2 cut(s)	522, 611
BspOI	GCTAGC	1 cut(s)	449
BspPI	GGATC	5 cut(s)	334, 510, 515, 516, 528
BspQI	GCTCTTC	1 cut(s)	680
BsrI	ACTGG	4 cut(s)	267, 313, 384, 484
BssECI	CCNNGG	2 cut(s)	12, 645
BssMI	GATC	5 cut(s)	280, 339, 502, 508, 520
BssT1I	CCWWGG	1 cut(s)	645
Bst4CI	ACNGT	2 cut(s)	233, 679
Bst6I	CTCTTC	2 cut(s)	415, 680
BstC8I	GCNNGC	4 cut(s)	42, 273, 447, 595
BstDEI	CTNAG	1 cut(s)	202
BstF5I	GGATG	1 cut(s)	489
BstFNI	CGCG	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	78
BstKTI	GATC	5 cut(s)	283, 342, 505, 511, 523
BstMBI	GATC	5 cut(s)	280, 339, 502, 508, 520
BstMWI	GCNNNNNNNGC	6 cut(s)	272, 301, 365, 404, 455, 464
BstNSI	RCATGY	1 cut(s)	299
BstSCI	CCNGG	2 cut(s)	398, 663
BstSFI	CTRYAG	1 cut(s)	675
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	5 cut(s)	346, 352, 467, 479, 482
BstX2I	RGATCY	3 cut(s)	502, 508, 520
BstYI	RGATCY	3 cut(s)	502, 508, 520
BsuRI	GGCC	1 cut(s)	44
BtsCI	GGATG	1 cut(s)	489
BtsIMutI	CAGTG	2 cut(s)	238, 260
Cac8I	GCNNGC	4 cut(s)	42, 273, 447, 595
CfoI	GCGC	1 cut(s)	78
Cfr13I	GGNCC	1 cut(s)	43
CseI	GACGC	2 cut(s)	447, 613
Csp6I	GTAC	1 cut(s)	658
CviAII	CATG	2 cut(s)	47, 296
CviJI	RGCY	8 cut(s)	26, 44, 164, 266, 359, 398, 445, 561
CviKI_1	RGCY	8 cut(s)	26, 44, 164, 266, 359, 398, 445, 561
CviQI	GTAC	1 cut(s)	658
DdeI	CTNAG	1 cut(s)	202
DpnI	GATC	5 cut(s)	282, 341, 504, 510, 522
DpnII	GATC	5 cut(s)	280, 339, 502, 508, 520
DrdI	GACNNNNNNGTC	1 cut(s)	254
DseDI	GACNNNNNNGTC	1 cut(s)	254
Eam1104I	CTCTTC	2 cut(s)	415, 680
EarI	CTCTTC	2 cut(s)	415, 680
Eco130I	CCWWGG	1 cut(s)	645
EcoT14I	CCWWGG	1 cut(s)	645
EcoT22I	ATGCAT	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	645
FaeI	CATG	2 cut(s)	50, 299
FalI	AAGNNNNNCTT	2 cut(s)	15, 47
FatI	CATG	2 cut(s)	46, 295
FauNDI	CATATG	1 cut(s)	277
Fnu4HI	GCNGC	6 cut(s)	360, 363, 366, 456, 468, 471
FokI	GGATG	1 cut(s)	496
Fsp4HI	GCNGC	6 cut(s)	360, 363, 366, 456, 468, 471
FspBI	CTAG	1 cut(s)	446
GlaI	GCGC	1 cut(s)	77
GluI	GCNGC	6 cut(s)	360, 363, 366, 456, 468, 471
GsuI	CTGGAG	1 cut(s)	401
HaeIII	GGCC	1 cut(s)	44
HapII	CCGG	3 cut(s)	238, 399, 665
HgaI	GACGC	2 cut(s)	447, 613
HhaI	GCGC	1 cut(s)	78
Hin1II	CATG	2 cut(s)	50, 299
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HincII	GTYRAC	1 cut(s)	462
HindII	GTYRAC	1 cut(s)	462
HpaII	CCGG	3 cut(s)	238, 399, 665
HphI	GGTGA	1 cut(s)	422
Hpy166II	GTNNAC	1 cut(s)	462
Hpy188I	TCNGA	3 cut(s)	205, 331, 633
Hpy188III	TCNNGA	2 cut(s)	238, 506
Hpy8I	GTNNAC	1 cut(s)	462
Hpy99I	CGWCG	2 cut(s)	335, 629
HpyAV	CCTTC	2 cut(s)	147, 407
HpyCH4III	ACNGT	2 cut(s)	233, 679
HpyCH4V	TGCA	7 cut(s)	55, 97, 271, 295, 543, 549, 597
HpyF10VI	GCNNNNNNNGC	6 cut(s)	272, 301, 365, 404, 455, 464
HpyF3I	CTNAG	1 cut(s)	202
Hsp92II	CATG	2 cut(s)	50, 299
HspAI	GCGC	1 cut(s)	76
Kpn2I	TCCGGA	1 cut(s)	237
Kzo9I	GATC	5 cut(s)	280, 339, 502, 508, 520
LguI	GCTCTTC	1 cut(s)	680
Lsp1109I	GCAGC	5 cut(s)	346, 352, 467, 479, 482
LweI	GCATC	2 cut(s)	482, 552
MaeI	CTAG	1 cut(s)	446
MaeIII	GTNAC	2 cut(s)	256, 581
MalI	GATC	5 cut(s)	282, 341, 504, 510, 522
MboI	GATC	5 cut(s)	280, 339, 502, 508, 520
MboII	GAAGA	3 cut(s)	70, 432, 697
MflI	RGATCY	3 cut(s)	502, 508, 520
MluCI	AATT	1 cut(s)	17
MmeI	TCCRAC	1 cut(s)	354
MnlI	CCTC	6 cut(s)	7, 136, 196, 199, 416, 419
Mph1103I	ATGCAT	1 cut(s)	297
MroI	TCCGGA	1 cut(s)	237
MspA1I	CMGCKG	1 cut(s)	365
MspI	CCGG	3 cut(s)	238, 399, 665
MspR9I	CCNGG	2 cut(s)	400, 665
Mva1269I	GAATGC	1 cut(s)	409
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	6 cut(s)	272, 301, 365, 404, 455, 464
NciI	CCSGG	2 cut(s)	400, 665
NdeI	CATATG	1 cut(s)	277
NdeII	GATC	5 cut(s)	280, 339, 502, 508, 520
NheI	GCTAGC	1 cut(s)	445
NlaIII	CATG	2 cut(s)	50, 299
NlaIV	GGNNCC	2 cut(s)	522, 611
NmeAIII	GCCGAG	1 cut(s)	37
NmuCI	GTSAC	2 cut(s)	256, 581
NsiI	ATGCAT	1 cut(s)	297
NspI	RCATGY	1 cut(s)	299
PciSI	GCTCTTC	1 cut(s)	680
PctI	GAATGC	1 cut(s)	409
PkrI	GCNGC	6 cut(s)	361, 364, 367, 457, 469, 472
PspN4I	GGNNCC	2 cut(s)	522, 611
PspPI	GGNCC	1 cut(s)	43
PsuI	RGATCY	3 cut(s)	502, 508, 520
RsaI	GTAC	1 cut(s)	659
RsaNI	GTAC	1 cut(s)	658
SapI	GCTCTTC	1 cut(s)	680
SatI	GCNGC	6 cut(s)	360, 363, 366, 456, 468, 471
Sau3AI	GATC	5 cut(s)	280, 339, 502, 508, 520
Sau96I	GGNCC	1 cut(s)	43
ScrFI	CCNGG	2 cut(s)	400, 665
SetI	ASST	8 cut(s)	28, 166, 181, 188, 361, 418, 563, 700
SfaNI	GCATC	2 cut(s)	482, 552
SfcI	CTRYAG	1 cut(s)	675
Sse9I	AATT	1 cut(s)	17
SsiI	CCGC	2 cut(s)	343, 363
SspMI	CTAG	1 cut(s)	446
StyD4I	CCNGG	2 cut(s)	398, 663
StyI	CCWWGG	1 cut(s)	645
TaaI	ACNGT	2 cut(s)	233, 679
TaqI	TCGA	1 cut(s)	700
TaqII	GACCGA	1 cut(s)	617
TasI	AATT	1 cut(s)	17
TauI	GCSGC	1 cut(s)	365
TscAI	CASTG	2 cut(s)	238, 267
TseFI	GTSAC	2 cut(s)	256, 581
TseI	GCWGC	5 cut(s)	359, 365, 455, 467, 470
Tsp45I	GTSAC	2 cut(s)	256, 581
TspDTI	ATGAA	3 cut(s)	132, 234, 335
TspRI	CASTG	2 cut(s)	238, 267
XapI	RAATTY	1 cut(s)	17
XceI	RCATGY	1 cut(s)	299
XcmI	CCANNNNNNNNNTGG	1 cut(s)	560
XspI	CTAG	1 cut(s)	446
Zsp2I	ATGCAT	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.