MD13G1230600.v1.1

Phd finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0013146
Physical Location & Seq
Forward (+)
22643422 .. 22645616
2195 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1230600.v1.1.491

Sequence Viewer

Length: 492 bp
ATGTCTTTCCTTGAAGAATTTAACGCCAATTTGGAATCTCTGCCTAATATTTTGGCTAAGAATTATTCGGTGATGCGCACTCTGGATCAAAGTTTACAAGATATCCAGAGACAAAATGAACAACGCTGCGAACAAGAAATTGAGGACATAAAGCGCGAAATTAAGTCTGGGAATATTACACCTGATACTTCCCTTATTAGATTCTCAGATGAGGCTCTTGATGAGCAGAAGCACAGCATTGGGATTGCAGACGAAAAGGTTCTTTTGGCTGTACGGGCATATGATCTGGTGGATACGCACATACAACAACTTGATCAGTACTTGAAAACTTTTGAGGAAGAGCTGCGTGAAAGAGATAGCGCTGCTGCGAGTGCGTTGCCTGCTCCAAGTCCCGATAGTGGTGCAAAATCTGGAAAGAGTAGTGAAGGTGGTCGAGGAGGGCGTAAGAAGTATCTACCTATTCTTAATGTTTCATTTATTATATTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0035064 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0140030 GO:0140034
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ING

Protein Analysis

164

Amino Acids

18.39

Weight (kDa)

4.86

Isoelectric Point (pI)

61.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ING PF12998 3 - 111 7e-21 Inhibitor of growth proteins N-terminal histone-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013146)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24010
fragaria_vesca FvH4_4g05430 FvH4_4g05430 FvH4_4g05430 FvH4_4g05430
malus_domestica MD13G1230600.v1.1 MD13G1230700.v1.1
prunus_persica Prupe.1G056400_v2.0.a1
pyrus_communis pycom13g20300
rosa_chinensis RchiOBHm_Chr4g0396581
rosa_laevigata RLG00000009519
rosa_roxburghii Rroxscaffold_5G00341430
rosa_rugosa Rorug03G0348800 Rorug03G0348900
rosa_samantha Rh4AG070500 Rh4BG068400 Rh4DG065500
rosa_wichuraiana Rw4G005620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 77
AccII CGCG 1 cut(s) 156
AclWI GGATC 1 cut(s) 93
AcsI RAATTY 1 cut(s) 17
AfaI GTAC 2 cut(s) 273, 320
AfeI AGCGCT 1 cut(s) 361
AfiI CCNNNNNNNGG 1 cut(s) 398
AgsI TTSAA 2 cut(s) 14, 325
AluBI AGCT 1 cut(s) 343
AluI AGCT 1 cut(s) 343
Alw26I GTCTC 1 cut(s) 103
AlwI GGATC 1 cut(s) 93
Aor51HI AGCGCT 1 cut(s) 361
ApeKI GCWGC 4 cut(s) 126, 343, 362, 365
ApoI RAATTY 1 cut(s) 17
Asp700I GAANNNNTTC 1 cut(s) 258
AspLEI GCGC 3 cut(s) 78, 156, 362
AsuHPI GGTGA 1 cut(s) 82
BbvI GCAGC 4 cut(s) 113, 330, 349, 352
BcgI CGANNNNNNTGC 4 cut(s) 358, 383, 392, 417
BciVI GTATCC 1 cut(s) 286
BclI TGATCA 1 cut(s) 313
BcoDI GTCTC 1 cut(s) 103
BfoI RGCGCY 1 cut(s) 363
BfuI GTATCC 1 cut(s) 286
BisI GCNGC 4 cut(s) 127, 344, 363, 366
BlsI GCNGC 4 cut(s) 128, 345, 364, 367
BmcAI AGTACT 1 cut(s) 320
BmsI GCATC 1 cut(s) 63
Bsc4I CCNNNNNNNGG 1 cut(s) 398
BseLI CCNNNNNNNGG 1 cut(s) 398
BseMII CTCAG 1 cut(s) 219
BseRI GAGGAG 1 cut(s) 450
BseXI GCAGC 4 cut(s) 113, 330, 349, 352
Bsh1236I CGCG 1 cut(s) 156
BslFI GGGAC 1 cut(s) 375
BslI CCNNNNNNNGG 1 cut(s) 398
BsmAI GTCTC 1 cut(s) 103
BsmFI GGGAC 1 cut(s) 375
Bsp143I GATC 3 cut(s) 85, 283, 313
BspCNI CTCAG 1 cut(s) 218
BspFNI CGCG 1 cut(s) 156
BspPI GGATC 1 cut(s) 93
BspQI GCTCTTC 1 cut(s) 333
BssMI GATC 3 cut(s) 85, 283, 313
Bst6I CTCTTC 1 cut(s) 333
BstC8I GCNNGC 1 cut(s) 381
BstDEI CTNAG 2 cut(s) 57, 205
BstFNI CGCG 1 cut(s) 156
BstH2I RGCGCY 1 cut(s) 363
BstHHI GCGC 3 cut(s) 78, 156, 362
BstKTI GATC 3 cut(s) 88, 286, 316
BstMAI GTCTC 1 cut(s) 103
BstMBI GATC 3 cut(s) 85, 283, 313
BstMWI GCNNNNNNNGC 3 cut(s) 275, 371, 380
BstUI CGCG 1 cut(s) 156
BstV1I GCAGC 4 cut(s) 113, 330, 349, 352
BsuI GTATCC 1 cut(s) 286
Cac8I GCNNGC 1 cut(s) 381
CfoI GCGC 3 cut(s) 78, 156, 362
Csp6I GTAC 2 cut(s) 272, 319
CviJI RGCY 4 cut(s) 56, 215, 269, 343
CviKI_1 RGCY 4 cut(s) 56, 215, 269, 343
CviQI GTAC 2 cut(s) 272, 319
DdeI CTNAG 2 cut(s) 57, 205
DpnI GATC 3 cut(s) 87, 285, 315
DpnII GATC 3 cut(s) 85, 283, 313
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
Eco32I GATATC 1 cut(s) 103
Eco47III AGCGCT 1 cut(s) 361
EcoRV GATATC 1 cut(s) 103
FaiI YATR 5 cut(s) 149, 280, 282, 302, 482
FaqI GGGAC 1 cut(s) 375
FauNDI CATATG 1 cut(s) 280
FbaI TGATCA 1 cut(s) 313
Fnu4HI GCNGC 4 cut(s) 127, 344, 363, 366
Fsp4HI GCNGC 4 cut(s) 127, 344, 363, 366
FspAI RTGCGCAY 1 cut(s) 77
FspI TGCGCA 1 cut(s) 77
GlaI GCGC 3 cut(s) 77, 155, 361
GluI GCNGC 4 cut(s) 127, 344, 363, 366
HaeII RGCGCY 1 cut(s) 363
HhaI GCGC 3 cut(s) 78, 156, 362
Hin6I GCGC 3 cut(s) 76, 154, 360
HinP1I GCGC 3 cut(s) 76, 154, 360
HinfI GANTC 2 cut(s) 35, 201
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 1 cut(s) 95
Hpy188I TCNGA 1 cut(s) 208
Hpy188III TCNNGA 5 cut(s) 83, 106, 218, 392, 411
Hpy8I GTNNAC 1 cut(s) 95
HpyAV CCTTC 1 cut(s) 419
HpyCH4V TGCA 2 cut(s) 248, 404
HpyF10VI GCNNNNNNNGC 3 cut(s) 275, 371, 380
HpyF3I CTNAG 2 cut(s) 57, 205
HspAI GCGC 3 cut(s) 76, 154, 360
Ksp22I TGATCA 1 cut(s) 313
Kzo9I GATC 3 cut(s) 85, 283, 313
LguI GCTCTTC 1 cut(s) 333
LmnI GCTCC 1 cut(s) 388
LpnPI CCDG 7 cut(s) 68, 119, 153, 195, 272, 393, 396
Lsp1109I GCAGC 4 cut(s) 113, 330, 349, 352
LweI GCATC 1 cut(s) 63
MalI GATC 3 cut(s) 87, 285, 315
MboI GATC 3 cut(s) 85, 283, 313
MboII GAAGA 2 cut(s) 26, 350
MluCI AATT 5 cut(s) 17, 28, 61, 138, 159
MnlI CCTC 5 cut(s) 136, 205, 328, 428, 431
MroXI GAANNNNTTC 1 cut(s) 258
MseI TTAA 3 cut(s) 21, 162, 465
MvnI CGCG 1 cut(s) 156
MwoI GCNNNNNNNGC 3 cut(s) 275, 371, 380
NdeI CATATG 1 cut(s) 280
NdeII GATC 3 cut(s) 85, 283, 313
NsbI TGCGCA 1 cut(s) 77
PciSI GCTCTTC 1 cut(s) 333
PcsI WCGNNNNNNNCGW 1 cut(s) 439
PdmI GAANNNNTTC 1 cut(s) 258
PfeI GAWTC 2 cut(s) 35, 201
PkrI GCNGC 4 cut(s) 128, 345, 364, 367
RsaI GTAC 2 cut(s) 273, 320
RsaNI GTAC 2 cut(s) 272, 319
SapI GCTCTTC 1 cut(s) 333
SaqAI TTAA 3 cut(s) 21, 162, 465
SatI GCNGC 4 cut(s) 127, 344, 363, 366
Sau3AI GATC 3 cut(s) 85, 283, 313
ScaI AGTACT 1 cut(s) 320
SetI ASST 5 cut(s) 184, 261, 345, 430, 460
SfaNI GCATC 1 cut(s) 63
Sse9I AATT 5 cut(s) 17, 28, 61, 138, 159
SspI AATATT 2 cut(s) 49, 175
TaqI TCGA 1 cut(s) 433
TasI AATT 5 cut(s) 17, 28, 61, 138, 159
TatI WGTACW 1 cut(s) 318
TfiI GAWTC 2 cut(s) 35, 201
Tru1I TTAA 3 cut(s) 21, 162, 465
Tru9I TTAA 3 cut(s) 21, 162, 465
TseI GCWGC 4 cut(s) 126, 343, 362, 365
TspDTI ATGAA 2 cut(s) 132, 462
XapI RAATTY 1 cut(s) 17
XmnI GAANNNNTTC 1 cut(s) 258
ZrmI AGTACT 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.