MD13G1230700.v1.1

Phd finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0013146
Physical Location & Seq
Forward (+)
22645618 .. 22646336
719 bp
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UTR
Exon/CDS
Intron
MD13G1230700.v1.1.491

Sequence Viewer

Length: 207 bp
ATGGATTTAGATATACCAGTGGATCCAAATGAACCCACGTACTGTTTATGCAACCAAGTTAGCTATGGGGAGATGGTTGCATGCGAGAACCCCAATTGCAAGATAGAGTGGTTCCATTTTGGGTGTGTTGGTCTGAAGGACAAACCAAGAGGAAAGTGGTATTGTACAGATTGTGCTGCATTGAAACCTCGCCGGAAAGGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0035064 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0140030 GO:0140034
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ING

Protein Analysis

69

Amino Acids

7.78

Weight (kDa)

7.53

Isoelectric Point (pI)

15.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD-1st_NSD PF23011 21 - 59 5.2e-08 Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013146)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24010
fragaria_vesca FvH4_4g05430 FvH4_4g05430 FvH4_4g05430 FvH4_4g05430
malus_domestica MD13G1230600.v1.1 MD13G1230700.v1.1
prunus_persica Prupe.1G056400_v2.0.a1
pyrus_communis pycom13g20300
rosa_chinensis RchiOBHm_Chr4g0396581
rosa_laevigata RLG00000009519
rosa_roxburghii Rroxscaffold_5G00341430
rosa_rugosa Rorug03G0348800 Rorug03G0348900
rosa_samantha Rh4AG070500 Rh4BG068400 Rh4DG065500
rosa_wichuraiana Rw4G005620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 17, 30
AcuI CTGAAG 1 cut(s) 155
AfaI GTAC 2 cut(s) 41, 166
AgsI TTSAA 1 cut(s) 184
AluBI AGCT 1 cut(s) 63
AluI AGCT 1 cut(s) 63
AlwI GGATC 2 cut(s) 17, 30
ApeKI GCWGC 1 cut(s) 176
BamHI GGATCC 1 cut(s) 22
BbvI GCAGC 1 cut(s) 163
BccI CCATC 1 cut(s) 67
BglI GCCNNNNNGGC 1 cut(s) 198
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
BmiI GGNNCC 2 cut(s) 24, 113
BsaAI YACGTR 1 cut(s) 39
Bse1I ACTGG 1 cut(s) 17
BseNI ACTGG 1 cut(s) 17
BseXI GCAGC 1 cut(s) 163
BsiSI CCGG 1 cut(s) 193
Bsp1407I TGTACA 1 cut(s) 164
Bsp143I GATC 1 cut(s) 22
BspLI GGNNCC 2 cut(s) 24, 113
BspPI GGATC 2 cut(s) 17, 30
BsrGI TGTACA 1 cut(s) 164
BsrI ACTGG 1 cut(s) 17
BssMI GATC 1 cut(s) 22
Bst4CI ACNGT 1 cut(s) 44
BstAUI TGTACA 1 cut(s) 164
BstBAI YACGTR 1 cut(s) 39
BstC8I GCNNGC 1 cut(s) 82
BstKTI GATC 1 cut(s) 25
BstMBI GATC 1 cut(s) 22
BstMWI GCNNNNNNNGC 1 cut(s) 198
BstNSI RCATGY 1 cut(s) 84
BstV1I GCAGC 1 cut(s) 163
BstX2I RGATCY 1 cut(s) 22
BstYI RGATCY 1 cut(s) 22
BtsIMutI CAGTG 1 cut(s) 24
Cac8I GCNNGC 1 cut(s) 82
Csp6I GTAC 2 cut(s) 40, 165
CviAII CATG 1 cut(s) 81
CviJI RGCY 1 cut(s) 63
CviKI_1 RGCY 1 cut(s) 63
CviQI GTAC 2 cut(s) 40, 165
DpnI GATC 1 cut(s) 24
DpnII GATC 1 cut(s) 22
Eco57I CTGAAG 1 cut(s) 155
FaeI CATG 1 cut(s) 84
FaiI YATR 4 cut(s) 14, 49, 66, 82
FatI CATG 1 cut(s) 80
Fnu4HI GCNGC 1 cut(s) 177
Fsp4HI GCNGC 1 cut(s) 177
GluI GCNGC 1 cut(s) 177
HapII CCGG 1 cut(s) 193
Hin1II CATG 1 cut(s) 84
HpaII CCGG 1 cut(s) 193
Hpy188I TCNGA 1 cut(s) 135
HpyAV CCTTC 1 cut(s) 130
HpyCH4III ACNGT 1 cut(s) 44
HpyCH4IV ACGT 1 cut(s) 38
HpyCH4V TGCA 4 cut(s) 51, 80, 99, 179
HpyF10VI GCNNNNNNNGC 1 cut(s) 198
HpySE526I ACGT 1 cut(s) 38
Hsp92II CATG 1 cut(s) 84
Kzo9I GATC 1 cut(s) 22
LpnPI CCDG 1 cut(s) 30
Lsp1109I GCAGC 1 cut(s) 163
MaeII ACGT 1 cut(s) 38
MalI GATC 1 cut(s) 24
MboI GATC 1 cut(s) 22
MfeI CAATTG 1 cut(s) 94
MflI RGATCY 1 cut(s) 22
MluCI AATT 1 cut(s) 94
MnlI CCTC 2 cut(s) 143, 198
MspI CCGG 1 cut(s) 193
MunI CAATTG 1 cut(s) 94
MwoI GCNNNNNNNGC 1 cut(s) 198
NdeII GATC 1 cut(s) 22
NlaIII CATG 1 cut(s) 84
NlaIV GGNNCC 2 cut(s) 24, 113
NspI RCATGY 1 cut(s) 84
PaeI GCATGC 1 cut(s) 84
PkrI GCNGC 1 cut(s) 178
Ppu21I YACGTR 1 cut(s) 39
PspN4I GGNNCC 2 cut(s) 24, 113
PsuI RGATCY 1 cut(s) 22
RsaI GTAC 2 cut(s) 41, 166
RsaNI GTAC 2 cut(s) 40, 165
SatI GCNGC 1 cut(s) 177
Sau3AI GATC 1 cut(s) 22
SetI ASST 3 cut(s) 41, 65, 190
SgeI CNNG 8 cut(s) 29, 49, 68, 93, 97, 112, 159, 201
SphI GCATGC 1 cut(s) 84
Sse9I AATT 1 cut(s) 94
TaaI ACNGT 1 cut(s) 44
TaiI ACGT 1 cut(s) 41
TasI AATT 1 cut(s) 94
TatI WGTACW 1 cut(s) 164
TscAI CASTG 1 cut(s) 24
TseI GCWGC 1 cut(s) 176
TspDTI ATGAA 1 cut(s) 45
TspRI CASTG 1 cut(s) 24
XceI RCATGY 1 cut(s) 84
XcmI CCANNNNNNNNNTGG 2 cut(s) 62, 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.