Rroxscaffold_5G00341430

Phd finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0013146
Physical Location & Seq
Reverse (-)
9952644 .. 9956806
4163 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00341430.1

Sequence Viewer

Length: 414 bp
ATGTCCTTCCTCGAAGAATTTCATGCCAATCTGGAGTCTCTGCCTAATATTCTGCAGAGGCATTATGCAGTGTTACGTAATCTAGACAAGAGTTTACAAGATATCCAAAGACAGAATGAGCAACGTTGCGAACAAGAAATAGAGGATATAAAGCGTGAGATTAAGTCTGGAAATATTACACCTGATAGTTCACTTATTAGATTCTCAGATGAGGCACTTGATGAGCAAAAGCATAGCATTGGGATTGCTGATGAAAAGGTCATGCTGGCTGTTCGGGCATATGATTTGGTTGATACACACATACAACAGCTTGATCAATATTTGAAAAAAATTGGTGCAGAGCTCCGGCCTGGACATAATTATTTCAGCCTCAGATGGTGTTGCCGCAAGTGCCATGCCTGCTCCAAGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0035064 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0140030 GO:0140034
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ING

Protein Analysis

137

Amino Acids

16.01

Weight (kDa)

6.06

Isoelectric Point (pI)

73.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ING PF12998 3 - 111 5.4e-21 Inhibitor of growth proteins N-terminal histone-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013146)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24010
fragaria_vesca FvH4_4g05430 FvH4_4g05430 FvH4_4g05430 FvH4_4g05430
malus_domestica MD13G1230600.v1.1 MD13G1230700.v1.1
prunus_persica Prupe.1G056400_v2.0.a1
pyrus_communis pycom13g20300
rosa_chinensis RchiOBHm_Chr4g0396581
rosa_laevigata RLG00000009519
rosa_roxburghii Rroxscaffold_5G00341430
rosa_rugosa Rorug03G0348800 Rorug03G0348900
rosa_samantha Rh4AG070500 Rh4BG068400 Rh4DG065500
rosa_wichuraiana Rw4G005620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 385
AclI AACGTT 1 cut(s) 124
AcsI RAATTY 1 cut(s) 17
AgsI TTSAA 1 cut(s) 325
AjnI CCWGG 1 cut(s) 349
AluBI AGCT 2 cut(s) 310, 343
AluI AGCT 2 cut(s) 310, 343
Alw21I GWGCWC 1 cut(s) 345
Alw26I GTCTC 1 cut(s) 42
AoxI GGCC 1 cut(s) 347
ApoI RAATTY 1 cut(s) 17
Asp700I GAANNNNTTC 1 cut(s) 18
BanII GRGCYC 1 cut(s) 345
Bbv12I GWGCWC 1 cut(s) 345
BccI CCATC 1 cut(s) 369
BciT130I CCWGG 1 cut(s) 351
BclI TGATCA 1 cut(s) 313
BcoDI GTCTC 1 cut(s) 42
BfaI CTAG 1 cut(s) 83
BfmI CTRYAG 1 cut(s) 53
BisI GCNGC 1 cut(s) 385
BlsI GCNGC 1 cut(s) 386
Bme1390I CCNGG 1 cut(s) 351
BmrFI CCNGG 1 cut(s) 351
BpmI CTGGAG 1 cut(s) 53
BsaAI YACGTR 1 cut(s) 77
BseBI CCWGG 1 cut(s) 351
BseMII CTCAG 2 cut(s) 219, 385
BsgI GTGCAG 1 cut(s) 357
BshFI GGCC 1 cut(s) 349
BsiHKAI GWGCWC 1 cut(s) 345
BsiSI CCGG 1 cut(s) 346
BsmAI GTCTC 1 cut(s) 42
BsnI GGCC 1 cut(s) 349
Bsp1286I GDGCHC 1 cut(s) 345
Bsp143I GATC 1 cut(s) 313
BspACI CCGC 1 cut(s) 385
BspANI GGCC 1 cut(s) 349
BspCNI CTCAG 2 cut(s) 218, 384
BspMAI CTGCAG 1 cut(s) 57
BssMI GATC 1 cut(s) 313
Bst2UI CCWGG 1 cut(s) 351
BstBAI YACGTR 1 cut(s) 77
BstC8I GCNNGC 2 cut(s) 267, 400
BstDEI CTNAG 2 cut(s) 205, 371
BstKTI GATC 1 cut(s) 316
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 1 cut(s) 313
BstMWI GCNNNNNNNGC 3 cut(s) 275, 390, 399
BstNI CCWGG 1 cut(s) 351
BstSCI CCNGG 1 cut(s) 349
BstSFI CTRYAG 1 cut(s) 53
BstSNI TACGTA 1 cut(s) 77
BsuRI GGCC 1 cut(s) 349
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 75
Cac8I GCNNGC 2 cut(s) 267, 400
CviAII CATG 3 cut(s) 23, 262, 395
CviJI RGCY 5 cut(s) 269, 310, 343, 349, 369
CviKI_1 RGCY 5 cut(s) 269, 310, 343, 349, 369
DdeI CTNAG 2 cut(s) 205, 371
DpnI GATC 1 cut(s) 315
DpnII GATC 1 cut(s) 313
Ecl136II GAGCTC 1 cut(s) 343
Eco105I TACGTA 1 cut(s) 77
Eco24I GRGCYC 1 cut(s) 345
Eco32I GATATC 1 cut(s) 103
Eco53kI GAGCTC 1 cut(s) 343
EcoICRI GAGCTC 1 cut(s) 343
EcoRII CCWGG 1 cut(s) 349
EcoRV GATATC 1 cut(s) 103
EcoT38I GRGCYC 1 cut(s) 345
FaeI CATG 3 cut(s) 26, 265, 398
FatI CATG 3 cut(s) 22, 261, 394
FauNDI CATATG 1 cut(s) 280
FbaI TGATCA 1 cut(s) 313
Fnu4HI GCNGC 1 cut(s) 385
FriOI GRGCYC 1 cut(s) 345
Fsp4HI GCNGC 1 cut(s) 385
FspBI CTAG 1 cut(s) 83
GluI GCNGC 1 cut(s) 385
GsuI CTGGAG 1 cut(s) 53
HaeIII GGCC 1 cut(s) 349
HapII CCGG 1 cut(s) 346
Hin1II CATG 3 cut(s) 26, 265, 398
HinfI GANTC 2 cut(s) 35, 201
HpaII CCGG 1 cut(s) 346
Hpy166II GTNNAC 2 cut(s) 95, 191
Hpy188I TCNGA 2 cut(s) 208, 374
Hpy188III TCNNGA 4 cut(s) 32, 83, 168, 411
Hpy8I GTNNAC 2 cut(s) 95, 191
HpyAV CCTTC 1 cut(s) 16
HpyCH4IV ACGT 2 cut(s) 76, 124
HpyCH4V TGCA 3 cut(s) 55, 68, 338
HpyF10VI GCNNNNNNNGC 3 cut(s) 275, 390, 399
HpyF3I CTNAG 2 cut(s) 205, 371
HpySE526I ACGT 2 cut(s) 76, 124
Hsp92II CATG 3 cut(s) 26, 265, 398
Ksp22I TGATCA 1 cut(s) 313
Kzo9I GATC 1 cut(s) 313
LmnI GCTCC 2 cut(s) 348, 407
LpnPI CCDG 7 cut(s) 17, 153, 195, 251, 336, 359, 363
MaeI CTAG 1 cut(s) 83
MaeII ACGT 2 cut(s) 76, 124
MaeIII GTNAC 1 cut(s) 72
MalI GATC 1 cut(s) 315
MboI GATC 1 cut(s) 313
MboII GAAGA 1 cut(s) 26
MhlI GDGCHC 1 cut(s) 345
MluCI AATT 3 cut(s) 17, 330, 358
MlyI GAGTC 1 cut(s) 44
MnlI CCTC 5 cut(s) 20, 51, 136, 205, 380
MroXI GAANNNNTTC 1 cut(s) 18
MseI TTAA 1 cut(s) 162
MspI CCGG 1 cut(s) 346
MspR9I CCNGG 1 cut(s) 351
MvaI CCWGG 1 cut(s) 351
MwoI GCNNNNNNNGC 3 cut(s) 275, 390, 399
NdeI CATATG 1 cut(s) 280
NdeII GATC 1 cut(s) 313
NlaIII CATG 3 cut(s) 26, 265, 398
PdmI GAANNNNTTC 1 cut(s) 18
PfeI GAWTC 1 cut(s) 201
PkrI GCNGC 1 cut(s) 386
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
Ppu21I YACGTR 1 cut(s) 77
Psp124BI GAGCTC 1 cut(s) 345
Psp1406I AACGTT 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 349
PspGI CCWGG 1 cut(s) 349
PstI CTGCAG 1 cut(s) 57
SacI GAGCTC 1 cut(s) 345
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 1 cut(s) 385
Sau3AI GATC 1 cut(s) 313
SchI GAGTC 1 cut(s) 44
ScrFI CCNGG 1 cut(s) 351
SduI GDGCHC 1 cut(s) 345
SetI ASST 6 cut(s) 79, 127, 184, 261, 312, 345
SfcI CTRYAG 1 cut(s) 53
SnaBI TACGTA 1 cut(s) 77
Sse9I AATT 3 cut(s) 17, 330, 358
SsiI CCGC 1 cut(s) 385
SspI AATATT 3 cut(s) 49, 175, 320
SspMI CTAG 1 cut(s) 83
SstI GAGCTC 1 cut(s) 345
StyD4I CCNGG 1 cut(s) 349
TaiI ACGT 2 cut(s) 79, 127
TaqI TCGA 1 cut(s) 12
TasI AATT 3 cut(s) 17, 330, 358
TauI GCSGC 1 cut(s) 387
TfiI GAWTC 1 cut(s) 201
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 1 cut(s) 75
TspDTI ATGAA 2 cut(s) 11, 267
TspRI CASTG 1 cut(s) 75
XapI RAATTY 1 cut(s) 17
XbaI TCTAGA 1 cut(s) 82
XmnI GAANNNNTTC 1 cut(s) 18
XspI CTAG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.