Rh4AG070500

Phd finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0013146
Physical Location & Seq
Reverse (-)
14567082 .. 14571420
4339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG070500.1

Sequence Viewer

Length: 357 bp
ATGTCCTTCCTCGAAGAATTTCATGCCAATCTGGAGTCTCTGCCTAATATTCTGCAAAGGCATTATGCAGTGTTACGTAATCTAGACAAGAGTTTACAAGATATCCAAAGACAGAATGAGCAACGTTGCGAACAAGAAATAGAGGATATAAAGCGCGAGATTAAGTCTGGAAATATTACACCTGATAGTTCACTTATTAGATTCTCAGATGAGGCACTTGATGAGCAAAAGCATAGCATTGGGATTGCTGATGAAAAGGTCATGCTGGCAGTTCGGGCATATGATTTGGTATGTGGTGGATCTCCATCTTTGTCTATACATATAATTGCTGCACTTGTTGGTTTTGCAATTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0035064 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0140030 GO:0140034
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ING

Protein Analysis

118

Amino Acids

13.35

Weight (kDa)

4.98

Isoelectric Point (pI)

75.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ING PF12998 3 - 97 1.7e-16 Inhibitor of growth proteins N-terminal histone-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013146)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24010
fragaria_vesca FvH4_4g05430 FvH4_4g05430 FvH4_4g05430 FvH4_4g05430
malus_domestica MD13G1230600.v1.1 MD13G1230700.v1.1
prunus_persica Prupe.1G056400_v2.0.a1
pyrus_communis pycom13g20300
rosa_chinensis RchiOBHm_Chr4g0396581
rosa_laevigata RLG00000009519
rosa_roxburghii Rroxscaffold_5G00341430
rosa_rugosa Rorug03G0348800 Rorug03G0348900
rosa_samantha Rh4AG070500 Rh4BG068400 Rh4DG065500
rosa_wichuraiana Rw4G005620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 156
AclI AACGTT 1 cut(s) 124
AclWI GGATC 1 cut(s) 307
AcsI RAATTY 1 cut(s) 17
Alw26I GTCTC 1 cut(s) 42
AlwI GGATC 1 cut(s) 307
ApeKI GCWGC 1 cut(s) 329
ApoI RAATTY 1 cut(s) 17
Asp700I GAANNNNTTC 1 cut(s) 18
AspLEI GCGC 1 cut(s) 156
BbvI GCAGC 1 cut(s) 316
BccI CCATC 1 cut(s) 313
BcoDI GTCTC 1 cut(s) 42
BfaI CTAG 1 cut(s) 83
BisI GCNGC 1 cut(s) 330
BlsI GCNGC 1 cut(s) 331
BpmI CTGGAG 1 cut(s) 53
BsaAI YACGTR 1 cut(s) 77
BsaBI GATNNNNATC 1 cut(s) 304
Bse8I GATNNNNATC 1 cut(s) 304
BseJI GATNNNNATC 1 cut(s) 304
BseMII CTCAG 1 cut(s) 219
BseXI GCAGC 1 cut(s) 316
BsgI GTGCAG 1 cut(s) 315
Bsh1236I CGCG 1 cut(s) 156
BsmAI GTCTC 1 cut(s) 42
Bsp143I GATC 1 cut(s) 299
BspCNI CTCAG 1 cut(s) 218
BspFNI CGCG 1 cut(s) 156
BspPI GGATC 1 cut(s) 307
BssMI GATC 1 cut(s) 299
BstBAI YACGTR 1 cut(s) 77
BstC8I GCNNGC 1 cut(s) 267
BstDEI CTNAG 1 cut(s) 205
BstFNI CGCG 1 cut(s) 156
BstHHI GCGC 1 cut(s) 156
BstKTI GATC 1 cut(s) 302
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 1 cut(s) 299
BstMWI GCNNNNNNNGC 1 cut(s) 275
BstSNI TACGTA 1 cut(s) 77
BstUI CGCG 1 cut(s) 156
BstV1I GCAGC 1 cut(s) 316
BstX2I RGATCY 1 cut(s) 299
BstYI RGATCY 1 cut(s) 299
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 75
Cac8I GCNNGC 1 cut(s) 267
CfoI GCGC 1 cut(s) 156
CviAII CATG 2 cut(s) 23, 262
DdeI CTNAG 1 cut(s) 205
DpnI GATC 1 cut(s) 301
DpnII GATC 1 cut(s) 299
Eco105I TACGTA 1 cut(s) 77
Eco32I GATATC 1 cut(s) 103
EcoRV GATATC 1 cut(s) 103
FaeI CATG 2 cut(s) 26, 265
FatI CATG 2 cut(s) 22, 261
FauNDI CATATG 1 cut(s) 280
Fnu4HI GCNGC 1 cut(s) 330
Fsp4HI GCNGC 1 cut(s) 330
FspBI CTAG 1 cut(s) 83
GlaI GCGC 1 cut(s) 155
GluI GCNGC 1 cut(s) 330
GsuI CTGGAG 1 cut(s) 53
HhaI GCGC 1 cut(s) 156
Hin1II CATG 2 cut(s) 26, 265
Hin6I GCGC 1 cut(s) 154
HinP1I GCGC 1 cut(s) 154
HinfI GANTC 2 cut(s) 35, 201
Hpy166II GTNNAC 2 cut(s) 95, 191
Hpy188I TCNGA 1 cut(s) 208
Hpy188III TCNNGA 3 cut(s) 32, 83, 168
Hpy8I GTNNAC 2 cut(s) 95, 191
HpyAV CCTTC 1 cut(s) 16
HpyCH4IV ACGT 2 cut(s) 76, 124
HpyCH4V TGCA 4 cut(s) 55, 68, 332, 347
HpyF10VI GCNNNNNNNGC 1 cut(s) 275
HpyF3I CTNAG 1 cut(s) 205
HpySE526I ACGT 2 cut(s) 76, 124
Hsp92II CATG 2 cut(s) 26, 265
HspAI GCGC 1 cut(s) 154
Kzo9I GATC 1 cut(s) 299
LpnPI CCDG 4 cut(s) 17, 153, 195, 251
Lsp1109I GCAGC 1 cut(s) 316
MaeI CTAG 1 cut(s) 83
MaeII ACGT 2 cut(s) 76, 124
MaeIII GTNAC 1 cut(s) 72
MalI GATC 1 cut(s) 301
MboI GATC 1 cut(s) 299
MboII GAAGA 1 cut(s) 26
MflI RGATCY 1 cut(s) 299
MluCI AATT 3 cut(s) 17, 324, 348
MlyI GAGTC 1 cut(s) 44
MnlI CCTC 3 cut(s) 20, 136, 205
MroXI GAANNNNTTC 1 cut(s) 18
MseI TTAA 2 cut(s) 162, 355
MvnI CGCG 1 cut(s) 156
MwoI GCNNNNNNNGC 1 cut(s) 275
NdeI CATATG 1 cut(s) 280
NdeII GATC 1 cut(s) 299
NlaIII CATG 2 cut(s) 26, 265
PdmI GAANNNNTTC 1 cut(s) 18
PfeI GAWTC 1 cut(s) 201
PkrI GCNGC 1 cut(s) 331
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
Ppu21I YACGTR 1 cut(s) 77
Psp1406I AACGTT 1 cut(s) 124
PsuI RGATCY 1 cut(s) 299
SaqAI TTAA 2 cut(s) 162, 355
SatI GCNGC 1 cut(s) 330
Sau3AI GATC 1 cut(s) 299
SchI GAGTC 1 cut(s) 44
SetI ASST 4 cut(s) 79, 127, 184, 261
SnaBI TACGTA 1 cut(s) 77
Sse9I AATT 3 cut(s) 17, 324, 348
SspI AATATT 2 cut(s) 49, 175
SspMI CTAG 1 cut(s) 83
TaiI ACGT 2 cut(s) 79, 127
TaqI TCGA 1 cut(s) 12
TasI AATT 3 cut(s) 17, 324, 348
TfiI GAWTC 1 cut(s) 201
Tru1I TTAA 2 cut(s) 162, 355
Tru9I TTAA 2 cut(s) 162, 355
TscAI CASTG 1 cut(s) 75
TseI GCWGC 1 cut(s) 329
TspDTI ATGAA 2 cut(s) 11, 267
TspRI CASTG 1 cut(s) 75
XapI RAATTY 1 cut(s) 17
XbaI TCTAGA 1 cut(s) 82
XmnI GAANNNNTTC 1 cut(s) 18
XspI CTAG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.