Phd finger protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G24010 |
| fragaria_vesca | FvH4_4g05430 FvH4_4g05430 FvH4_4g05430 FvH4_4g05430 |
| malus_domestica | MD13G1230600.v1.1 MD13G1230700.v1.1 |
| prunus_persica | Prupe.1G056400_v2.0.a1 |
| pyrus_communis | pycom13g20300 |
| rosa_chinensis | RchiOBHm_Chr4g0396581 |
| rosa_laevigata | RLG00000009519 |
| rosa_roxburghii | Rroxscaffold_5G00341430 |
| rosa_rugosa | Rorug03G0348800 Rorug03G0348900 |
| rosa_samantha | Rh4AG070500 Rh4BG068400 Rh4DG065500 |
| rosa_wichuraiana | Rw4G005620 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 502, 514 |
| Acc36I | ACCTGC | 2 cut(s) | 502, 514 |
| AccII | CGCG | 1 cut(s) | 156 |
| AciI | CCGC | 2 cut(s) | 369, 699 |
| AclI | AACGTT | 1 cut(s) | 124 |
| AclWI | GGATC | 2 cut(s) | 539, 552 |
| AcsI | RAATTY | 1 cut(s) | 17 |
| AgsI | TTSAA | 3 cut(s) | 325, 629, 658 |
| AluBI | AGCT | 4 cut(s) | 310, 343, 488, 585 |
| AluI | AGCT | 4 cut(s) | 310, 343, 488, 585 |
| Alw21I | GWGCWC | 1 cut(s) | 345 |
| Alw26I | GTCTC | 1 cut(s) | 42 |
| AlwI | GGATC | 2 cut(s) | 539, 552 |
| AoxI | GGCC | 1 cut(s) | 347 |
| ApeKI | GCWGC | 3 cut(s) | 423, 470, 645 |
| ApoI | RAATTY | 1 cut(s) | 17 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 18 |
| AspLEI | GCGC | 1 cut(s) | 156 |
| BamHI | GGATCC | 1 cut(s) | 544 |
| BanII | GRGCYC | 1 cut(s) | 345 |
| Bbv12I | GWGCWC | 1 cut(s) | 345 |
| BbvI | GCAGC | 3 cut(s) | 435, 482, 632 |
| BccI | CCATC | 2 cut(s) | 353, 392 |
| BclI | TGATCA | 1 cut(s) | 313 |
| BcoDI | GTCTC | 1 cut(s) | 42 |
| BfaI | CTAG | 1 cut(s) | 83 |
| BfuAI | ACCTGC | 2 cut(s) | 502, 514 |
| BisI | GCNGC | 4 cut(s) | 369, 424, 471, 646 |
| BlsI | GCNGC | 4 cut(s) | 370, 425, 472, 647 |
| BmiI | GGNNCC | 2 cut(s) | 546, 635 |
| BpmI | CTGGAG | 1 cut(s) | 53 |
| BsaAI | YACGTR | 1 cut(s) | 77 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 582, 612 |
| Bse1I | ACTGG | 2 cut(s) | 523, 539 |
| BseMII | CTCAG | 2 cut(s) | 219, 369 |
| BseNI | ACTGG | 2 cut(s) | 523, 539 |
| BseRI | GAGGAG | 1 cut(s) | 453 |
| BseXI | GCAGC | 3 cut(s) | 435, 482, 632 |
| BsgI | GTGCAG | 2 cut(s) | 357, 486 |
| Bsh1236I | CGCG | 1 cut(s) | 156 |
| BshFI | GGCC | 1 cut(s) | 349 |
| BsiHKAI | GWGCWC | 1 cut(s) | 345 |
| BsiSI | CCGG | 1 cut(s) | 346 |
| BsmAI | GTCTC | 1 cut(s) | 42 |
| BsnI | GGCC | 1 cut(s) | 349 |
| Bsp1286I | GDGCHC | 1 cut(s) | 345 |
| Bsp143I | GATC | 3 cut(s) | 313, 544, 661 |
| BspACI | CCGC | 2 cut(s) | 369, 699 |
| BspANI | GGCC | 1 cut(s) | 349 |
| BspCNI | CTCAG | 2 cut(s) | 218, 368 |
| BspFNI | CGCG | 1 cut(s) | 156 |
| BspLI | GGNNCC | 2 cut(s) | 546, 635 |
| BspMI | ACCTGC | 2 cut(s) | 502, 514 |
| BspPI | GGATC | 2 cut(s) | 539, 552 |
| BsrI | ACTGG | 2 cut(s) | 523, 539 |
| BssMI | GATC | 3 cut(s) | 313, 544, 661 |
| Bst4CI | ACNGT | 2 cut(s) | 466, 566 |
| BstBAI | YACGTR | 1 cut(s) | 77 |
| BstC8I | GCNNGC | 4 cut(s) | 267, 351, 384, 604 |
| BstDEI | CTNAG | 2 cut(s) | 205, 355 |
| BstFNI | CGCG | 1 cut(s) | 156 |
| BstHHI | GCGC | 1 cut(s) | 156 |
| BstKTI | GATC | 3 cut(s) | 316, 547, 664 |
| BstMAI | GTCTC | 1 cut(s) | 42 |
| BstMBI | GATC | 3 cut(s) | 313, 544, 661 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 275, 374, 383, 467, 476, 485, 494 |
| BstNSI | RCATGY | 1 cut(s) | 606 |
| BstSNI | TACGTA | 1 cut(s) | 77 |
| BstUI | CGCG | 1 cut(s) | 156 |
| BstV1I | GCAGC | 3 cut(s) | 435, 482, 632 |
| BstX2I | RGATCY | 1 cut(s) | 544 |
| BstYI | RGATCY | 1 cut(s) | 544 |
| BsuRI | GGCC | 1 cut(s) | 349 |
| BtsI | GCAGTG | 1 cut(s) | 75 |
| BtsIMutI | CAGTG | 2 cut(s) | 75, 546 |
| BveI | ACCTGC | 2 cut(s) | 502, 514 |
| Cac8I | GCNNGC | 4 cut(s) | 267, 351, 384, 604 |
| CfoI | GCGC | 1 cut(s) | 156 |
| CviAII | CATG | 4 cut(s) | 23, 262, 379, 603 |
| CviJI | RGCY | 9 cut(s) | 269, 310, 343, 349, 488, 556, 585, 645, 667 |
| CviKI_1 | RGCY | 9 cut(s) | 269, 310, 343, 349, 488, 556, 585, 645, 667 |
| DdeI | CTNAG | 2 cut(s) | 205, 355 |
| DpnI | GATC | 3 cut(s) | 315, 546, 663 |
| DpnII | GATC | 3 cut(s) | 313, 544, 661 |
| Ecl136II | GAGCTC | 1 cut(s) | 343 |
| Eco105I | TACGTA | 1 cut(s) | 77 |
| Eco24I | GRGCYC | 1 cut(s) | 345 |
| Eco32I | GATATC | 1 cut(s) | 103 |
| Eco53kI | GAGCTC | 1 cut(s) | 343 |
| EcoICRI | GAGCTC | 1 cut(s) | 343 |
| EcoRV | GATATC | 1 cut(s) | 103 |
| EcoT38I | GRGCYC | 1 cut(s) | 345 |
| FaeI | CATG | 4 cut(s) | 26, 265, 382, 606 |
| FatI | CATG | 4 cut(s) | 22, 261, 378, 602 |
| FauNDI | CATATG | 1 cut(s) | 280 |
| FbaI | TGATCA | 1 cut(s) | 313 |
| Fnu4HI | GCNGC | 4 cut(s) | 369, 424, 471, 646 |
| FriOI | GRGCYC | 1 cut(s) | 345 |
| Fsp4HI | GCNGC | 4 cut(s) | 369, 424, 471, 646 |
| FspBI | CTAG | 1 cut(s) | 83 |
| GlaI | GCGC | 1 cut(s) | 155 |
| GluI | GCNGC | 4 cut(s) | 369, 424, 471, 646 |
| GsuI | CTGGAG | 1 cut(s) | 53 |
| HaeIII | GGCC | 1 cut(s) | 349 |
| HapII | CCGG | 1 cut(s) | 346 |
| HhaI | GCGC | 1 cut(s) | 156 |
| Hin1II | CATG | 4 cut(s) | 26, 265, 382, 606 |
| Hin6I | GCGC | 1 cut(s) | 154 |
| HinP1I | GCGC | 1 cut(s) | 154 |
| HinfI | GANTC | 2 cut(s) | 35, 201 |
| HpaII | CCGG | 1 cut(s) | 346 |
| Hpy166II | GTNNAC | 2 cut(s) | 95, 191 |
| Hpy188I | TCNGA | 2 cut(s) | 208, 358 |
| Hpy188III | TCNNGA | 6 cut(s) | 32, 83, 168, 395, 414, 689 |
| Hpy8I | GTNNAC | 2 cut(s) | 95, 191 |
| Hpy99I | CGWCG | 1 cut(s) | 717 |
| HpyAV | CCTTC | 3 cut(s) | 16, 411, 422 |
| HpyCH4III | ACNGT | 2 cut(s) | 466, 566 |
| HpyCH4IV | ACGT | 2 cut(s) | 76, 124 |
| HpyCH4V | TGCA | 8 cut(s) | 55, 68, 338, 407, 503, 509, 602, 621 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 275, 374, 383, 467, 476, 485, 494 |
| HpyF3I | CTNAG | 2 cut(s) | 205, 355 |
| HpySE526I | ACGT | 2 cut(s) | 76, 124 |
| Hsp92II | CATG | 4 cut(s) | 26, 265, 382, 606 |
| HspAI | GCGC | 1 cut(s) | 154 |
| Ksp22I | TGATCA | 1 cut(s) | 313 |
| Kzo9I | GATC | 3 cut(s) | 313, 544, 661 |
| LmnI | GCTCC | 3 cut(s) | 348, 391, 420 |
| Lsp1109I | GCAGC | 3 cut(s) | 435, 482, 632 |
| MaeI | CTAG | 1 cut(s) | 83 |
| MaeII | ACGT | 2 cut(s) | 76, 124 |
| MaeIII | GTNAC | 2 cut(s) | 72, 572 |
| MalI | GATC | 3 cut(s) | 315, 546, 663 |
| MboI | GATC | 3 cut(s) | 313, 544, 661 |
| MboII | GAAGA | 1 cut(s) | 26 |
| MfeI | CAATTG | 1 cut(s) | 616 |
| MflI | RGATCY | 1 cut(s) | 544 |
| MhlI | GDGCHC | 1 cut(s) | 345 |
| MluCI | AATT | 3 cut(s) | 17, 330, 616 |
| MlyI | GAGTC | 1 cut(s) | 44 |
| MnlI | CCTC | 6 cut(s) | 20, 136, 205, 364, 431, 434 |
| MroXI | GAANNNNTTC | 1 cut(s) | 18 |
| MseI | TTAA | 1 cut(s) | 162 |
| MspI | CCGG | 1 cut(s) | 346 |
| MunI | CAATTG | 1 cut(s) | 616 |
| MvnI | CGCG | 1 cut(s) | 156 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 275, 374, 383, 467, 476, 485, 494 |
| NdeI | CATATG | 1 cut(s) | 280 |
| NdeII | GATC | 3 cut(s) | 313, 544, 661 |
| NlaIII | CATG | 4 cut(s) | 26, 265, 382, 606 |
| NlaIV | GGNNCC | 2 cut(s) | 546, 635 |
| NspI | RCATGY | 1 cut(s) | 606 |
| PaeI | GCATGC | 1 cut(s) | 606 |
| PaqCI | CACCTGC | 2 cut(s) | 502, 514 |
| PdmI | GAANNNNTTC | 1 cut(s) | 18 |
| PfeI | GAWTC | 1 cut(s) | 201 |
| PkrI | GCNGC | 4 cut(s) | 370, 425, 472, 647 |
| PleI | GAGTC | 1 cut(s) | 43 |
| PpsI | GAGTC | 1 cut(s) | 43 |
| Ppu21I | YACGTR | 1 cut(s) | 77 |
| Psp124BI | GAGCTC | 1 cut(s) | 345 |
| Psp1406I | AACGTT | 1 cut(s) | 124 |
| PspN4I | GGNNCC | 2 cut(s) | 546, 635 |
| PsuI | RGATCY | 1 cut(s) | 544 |
| SacI | GAGCTC | 1 cut(s) | 345 |
| SaqAI | TTAA | 1 cut(s) | 162 |
| SatI | GCNGC | 4 cut(s) | 369, 424, 471, 646 |
| Sau3AI | GATC | 3 cut(s) | 313, 544, 661 |
| SchI | GAGTC | 1 cut(s) | 44 |
| SduI | GDGCHC | 1 cut(s) | 345 |
| SnaBI | TACGTA | 1 cut(s) | 77 |
| SphI | GCATGC | 1 cut(s) | 606 |
| Sse9I | AATT | 3 cut(s) | 17, 330, 616 |
| SsiI | CCGC | 2 cut(s) | 369, 699 |
| SspI | AATATT | 3 cut(s) | 49, 175, 320 |
| SspMI | CTAG | 1 cut(s) | 83 |
| SstI | GAGCTC | 1 cut(s) | 345 |
| TaaI | ACNGT | 2 cut(s) | 466, 566 |
| TaiI | ACGT | 2 cut(s) | 79, 127 |
| TaqI | TCGA | 2 cut(s) | 12, 712 |
| TasI | AATT | 3 cut(s) | 17, 330, 616 |
| TauI | GCSGC | 1 cut(s) | 371 |
| TfiI | GAWTC | 1 cut(s) | 201 |
| Tru1I | TTAA | 1 cut(s) | 162 |
| Tru9I | TTAA | 1 cut(s) | 162 |
| TscAI | CASTG | 2 cut(s) | 75, 546 |
| TseI | GCWGC | 3 cut(s) | 423, 470, 645 |
| TspDTI | ATGAA | 2 cut(s) | 11, 267 |
| TspRI | CASTG | 2 cut(s) | 75, 546 |
| XapI | RAATTY | 1 cut(s) | 17 |
| XbaI | TCTAGA | 1 cut(s) | 82 |
| XceI | RCATGY | 1 cut(s) | 606 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 584, 675 |
| XmnI | GAANNNNTTC | 1 cut(s) | 18 |
| XspI | CTAG | 1 cut(s) | 83 |