Rh4BG068400

Phd finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0013146
Physical Location & Seq
Reverse (-)
12214438 .. 12218776
4339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG068400.1

Sequence Viewer

Length: 537 bp
ATGTCCTTCCTCGAAGAATTTCATGCCAATCTGGAGTCTCTGCCTAATATTCTGCAAAGGCATTATGCAGTGTTACGTAATCTAGACAAGAGTTTACAAGATATCCAAAGACAGAATGAGCAACGTTGCGAACAAGAAATAGAGGATATAAAGCGCGAGATTAAGTCTGGAAATATTACACCTGATAGTTCACTTATTAGATTCTCAGATGAGGCACTTGATGAGCAAAAGCATAGCATTGGGATTGCTGATGAAAAGGTCATGCTGGCAGTTCGGGCATATGATTTGGTTGATACACACATACAACAGCTTGATCAATATTTGAAAAAAATTGGTGCAGAGCTCCGGCCTGCCTCAGATAGTGTTGCCGCAAGTGCCATGCCTGCTCCAAGTCTTGATGGTGGTGCAAAATCTGGAAGGAGCAGCGAAGGTGGTAGAGGAGGGCGTAGGAAGTATTTCCCTTTCCTTGATCTTTTATTTGAATTTTCTGATTCCATGCATCTACCAGATTTTCCTTTTTTAACATTTCTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0035064 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0140030 GO:0140034
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ING

Protein Analysis

178

Amino Acids

20.17

Weight (kDa)

5.07

Isoelectric Point (pI)

75.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ING PF12998 3 - 111 1.2e-20 Inhibitor of growth proteins N-terminal histone-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013146)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24010
fragaria_vesca FvH4_4g05430 FvH4_4g05430 FvH4_4g05430 FvH4_4g05430
malus_domestica MD13G1230600.v1.1 MD13G1230700.v1.1
prunus_persica Prupe.1G056400_v2.0.a1
pyrus_communis pycom13g20300
rosa_chinensis RchiOBHm_Chr4g0396581
rosa_laevigata RLG00000009519
rosa_roxburghii Rroxscaffold_5G00341430
rosa_rugosa Rorug03G0348800 Rorug03G0348900
rosa_samantha Rh4AG070500 Rh4BG068400 Rh4DG065500
rosa_wichuraiana Rw4G005620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 156
AciI CCGC 1 cut(s) 369
AclI AACGTT 1 cut(s) 124
AcsI RAATTY 2 cut(s) 17, 482
AgsI TTSAA 3 cut(s) 325, 482, 533
AluBI AGCT 2 cut(s) 310, 343
AluI AGCT 2 cut(s) 310, 343
Alw21I GWGCWC 1 cut(s) 345
Alw26I GTCTC 1 cut(s) 42
AoxI GGCC 1 cut(s) 347
ApeKI GCWGC 1 cut(s) 423
ApoI RAATTY 2 cut(s) 17, 482
Asp700I GAANNNNTTC 2 cut(s) 18, 455
AspLEI GCGC 1 cut(s) 156
BanII GRGCYC 1 cut(s) 345
Bbv12I GWGCWC 1 cut(s) 345
BbvI GCAGC 1 cut(s) 435
BccI CCATC 1 cut(s) 392
BclI TGATCA 1 cut(s) 313
BcoDI GTCTC 1 cut(s) 42
BfaI CTAG 1 cut(s) 83
BisI GCNGC 2 cut(s) 369, 424
BlsI GCNGC 2 cut(s) 370, 425
BmsI GCATC 1 cut(s) 508
BpmI CTGGAG 1 cut(s) 53
BsaAI YACGTR 1 cut(s) 77
BseMII CTCAG 2 cut(s) 219, 369
BseRI GAGGAG 1 cut(s) 453
BseXI GCAGC 1 cut(s) 435
BsgI GTGCAG 1 cut(s) 357
Bsh1236I CGCG 1 cut(s) 156
BshFI GGCC 1 cut(s) 349
BsiHKAI GWGCWC 1 cut(s) 345
BsiSI CCGG 1 cut(s) 346
BsmAI GTCTC 1 cut(s) 42
BsnI GGCC 1 cut(s) 349
Bsp1286I GDGCHC 1 cut(s) 345
Bsp143I GATC 2 cut(s) 313, 469
BspACI CCGC 1 cut(s) 369
BspANI GGCC 1 cut(s) 349
BspCNI CTCAG 2 cut(s) 218, 368
BspFNI CGCG 1 cut(s) 156
BssMI GATC 2 cut(s) 313, 469
BstBAI YACGTR 1 cut(s) 77
BstC8I GCNNGC 3 cut(s) 267, 351, 384
BstDEI CTNAG 2 cut(s) 205, 355
BstFNI CGCG 1 cut(s) 156
BstHHI GCGC 1 cut(s) 156
BstKTI GATC 2 cut(s) 316, 472
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 2 cut(s) 313, 469
BstMWI GCNNNNNNNGC 3 cut(s) 275, 374, 383
BstSNI TACGTA 1 cut(s) 77
BstUI CGCG 1 cut(s) 156
BstV1I GCAGC 1 cut(s) 435
BsuRI GGCC 1 cut(s) 349
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 75
Cac8I GCNNGC 3 cut(s) 267, 351, 384
CfoI GCGC 1 cut(s) 156
CviAII CATG 4 cut(s) 23, 262, 379, 496
CviJI RGCY 3 cut(s) 310, 343, 349
CviKI_1 RGCY 3 cut(s) 310, 343, 349
DdeI CTNAG 2 cut(s) 205, 355
DpnI GATC 2 cut(s) 315, 471
DpnII GATC 2 cut(s) 313, 469
Ecl136II GAGCTC 1 cut(s) 343
Eco105I TACGTA 1 cut(s) 77
Eco24I GRGCYC 1 cut(s) 345
Eco32I GATATC 1 cut(s) 103
Eco53kI GAGCTC 1 cut(s) 343
EcoICRI GAGCTC 1 cut(s) 343
EcoRV GATATC 1 cut(s) 103
EcoT22I ATGCAT 1 cut(s) 501
EcoT38I GRGCYC 1 cut(s) 345
FaeI CATG 4 cut(s) 26, 265, 382, 499
FatI CATG 4 cut(s) 22, 261, 378, 495
FauNDI CATATG 1 cut(s) 280
FbaI TGATCA 1 cut(s) 313
Fnu4HI GCNGC 2 cut(s) 369, 424
FriOI GRGCYC 1 cut(s) 345
Fsp4HI GCNGC 2 cut(s) 369, 424
FspBI CTAG 1 cut(s) 83
GlaI GCGC 1 cut(s) 155
GluI GCNGC 2 cut(s) 369, 424
GsuI CTGGAG 1 cut(s) 53
HaeIII GGCC 1 cut(s) 349
HapII CCGG 1 cut(s) 346
HhaI GCGC 1 cut(s) 156
Hin1II CATG 4 cut(s) 26, 265, 382, 499
Hin6I GCGC 1 cut(s) 154
HinP1I GCGC 1 cut(s) 154
HinfI GANTC 3 cut(s) 35, 201, 491
HpaII CCGG 1 cut(s) 346
Hpy166II GTNNAC 2 cut(s) 95, 191
Hpy188I TCNGA 3 cut(s) 208, 358, 490
Hpy188III TCNNGA 6 cut(s) 32, 83, 168, 395, 414, 530
Hpy8I GTNNAC 2 cut(s) 95, 191
HpyAV CCTTC 3 cut(s) 16, 411, 422
HpyCH4IV ACGT 2 cut(s) 76, 124
HpyCH4V TGCA 5 cut(s) 55, 68, 338, 407, 499
HpyF10VI GCNNNNNNNGC 3 cut(s) 275, 374, 383
HpyF3I CTNAG 2 cut(s) 205, 355
HpySE526I ACGT 2 cut(s) 76, 124
Hsp92II CATG 4 cut(s) 26, 265, 382, 499
HspAI GCGC 1 cut(s) 154
Ksp22I TGATCA 1 cut(s) 313
Kzo9I GATC 2 cut(s) 313, 469
LmnI GCTCC 3 cut(s) 348, 391, 420
LpnPI CCDG 9 cut(s) 17, 153, 195, 251, 359, 363, 396, 399, 519
Lsp1109I GCAGC 1 cut(s) 435
LweI GCATC 1 cut(s) 508
MaeI CTAG 1 cut(s) 83
MaeII ACGT 2 cut(s) 76, 124
MaeIII GTNAC 1 cut(s) 72
MalI GATC 2 cut(s) 315, 471
MboI GATC 2 cut(s) 313, 469
MboII GAAGA 1 cut(s) 26
MhlI GDGCHC 1 cut(s) 345
MluCI AATT 3 cut(s) 17, 330, 482
MlyI GAGTC 1 cut(s) 44
MnlI CCTC 6 cut(s) 20, 136, 205, 364, 431, 434
Mph1103I ATGCAT 1 cut(s) 501
MroXI GAANNNNTTC 2 cut(s) 18, 455
MseI TTAA 2 cut(s) 162, 521
MspI CCGG 1 cut(s) 346
MvnI CGCG 1 cut(s) 156
MwoI GCNNNNNNNGC 3 cut(s) 275, 374, 383
NdeI CATATG 1 cut(s) 280
NdeII GATC 2 cut(s) 313, 469
NlaIII CATG 4 cut(s) 26, 265, 382, 499
NsiI ATGCAT 1 cut(s) 501
PdmI GAANNNNTTC 2 cut(s) 18, 455
PfeI GAWTC 2 cut(s) 201, 491
PkrI GCNGC 2 cut(s) 370, 425
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
Ppu21I YACGTR 1 cut(s) 77
Psp124BI GAGCTC 1 cut(s) 345
Psp1406I AACGTT 1 cut(s) 124
SacI GAGCTC 1 cut(s) 345
SaqAI TTAA 2 cut(s) 162, 521
SatI GCNGC 2 cut(s) 369, 424
Sau3AI GATC 2 cut(s) 313, 469
SchI GAGTC 1 cut(s) 44
SduI GDGCHC 1 cut(s) 345
SetI ASST 7 cut(s) 79, 127, 184, 261, 312, 345, 433
SfaNI GCATC 1 cut(s) 508
SnaBI TACGTA 1 cut(s) 77
Sse9I AATT 3 cut(s) 17, 330, 482
SsiI CCGC 1 cut(s) 369
SspI AATATT 3 cut(s) 49, 175, 320
SspMI CTAG 1 cut(s) 83
SstI GAGCTC 1 cut(s) 345
TaiI ACGT 2 cut(s) 79, 127
TaqI TCGA 1 cut(s) 12
TasI AATT 3 cut(s) 17, 330, 482
TauI GCSGC 1 cut(s) 371
TfiI GAWTC 2 cut(s) 201, 491
Tru1I TTAA 2 cut(s) 162, 521
Tru9I TTAA 2 cut(s) 162, 521
TscAI CASTG 1 cut(s) 75
TseI GCWGC 1 cut(s) 423
TspDTI ATGAA 2 cut(s) 11, 267
TspRI CASTG 1 cut(s) 75
XapI RAATTY 2 cut(s) 17, 482
XbaI TCTAGA 1 cut(s) 82
XmnI GAANNNNTTC 2 cut(s) 18, 455
XspI CTAG 1 cut(s) 83
Zsp2I ATGCAT 1 cut(s) 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.