Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013360

Physical Location & Seq

Genomic Coordinates Reverse (-)

8679819 .. 8680905

Gene Structure 1087 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G24030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGAATCAAAATCAGAACAAAACGAGTGGAGCTCCGGCGTGTGGGCTCACTTAACCGCCGTACGGCAACAATCGCCGCTTGTTCAGTGCATCACCAACTTCGTCTCGATGGATCTCGTTGCCAACACGCTTTTATCCGCCGGTGCATCTCCAGCGATGGTCCATTCCGTCGTTGAGATTCCTGATTTCACTCCTCATATTCACGCGCTCTGCGTCAACGTCGGAACACTTACACCTGACTGGCTTCCGTCAATGAAAGCTGCCGCTGAACTCGCTTCTCAGCTCCGAAAGCCTTGGGTTCTTGATCCCGCCGCCGTGAGTTGCTCCGGATTCCGATTAAAAGCGTGTTTGGAGCTCATCGAGCTAAAACCTACTGTAATCAAAGGAAACGGTTCTGAGATTATTGCTCTCTCCTCTGCTTCACGTGGACAAACTAAGGGTGCTGATAGCTCACATGAATCAACAGACGCTATAGAAGCTGCAAAGTCATTAGCGATGTCAAGTGGTGCTGTTGTTGCAGTGTCAGGAGCTGTTGATATTGTTACTGATGGGAAACAGGTTATTGGTGTTCACAACGGGACGAAGATGATGCAACAGATTACTGCAACTGGTTGTTCTCTAGCTGGTTTGATTGTAGCGTTTCTTGCTATTGATTCATCACGGGTACTGGAAGCTACGGTTTCCGCTATGGCTGTCTTTGGCATTGCAGGTGAGTTGGGTGAAGCGATGGCGAATGGTCCAGCGTCATTGAGAATGCATTTGATAGATTGTCTTTATGGGTTGGATGAAACCACAGTGCTTAAACGTGTGAATGTGACCAGGTTGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004417 GO:0006139 GO:0006725 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009110 GO:0009228 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019438 GO:0034641 GO:0034654 GO:0036172 GO:0042364 GO:0042723 GO:0042724 GO:0043094 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0046483 GO:0071704 GO:0072527 GO:0072528 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00730 ko01100 map00730 map01100

Pfam Domains

Protein Families

Protein Analysis

276

Amino Acids

28.79

Weight (kDa)

5.62

Isoelectric Point (pI)

36.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HK	PF02110	18 - 262	2.2e-70	Hydroxyethylthiazole kinase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24030
fragaria_vesca	FvH4_4g05510 FvH4_4g05510
malus_domestica	MD13G1229700.v1.1
prunus_persica	Prupe.1G056900_v2.0.a1
pyrus_communis	pycom13g20240
rosa_chinensis	RchiOBHm_Chr4g0396631
rosa_laevigata	RLG00000009514
rosa_multiflora	Rmu_sc0006586.1_g000020 Rmu_sc0010969.1_g000006
rosa_roxburghii	Rroxscaffold_2G00122890 Rroxscaffold_5G00341480
rosa_rugosa	Rorug03G0348300
rosa_samantha	Rh4AG070800 Rh4BG068800 Rh4CG076600 Rh4DG066000
rosa_wichuraiana	Rw4G005660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	698
Acc36I	ACCTGC	1 cut(s)	698
AccII	CGCG	1 cut(s)	206
AccIII	TCCGGA	1 cut(s)	326
AciI	CCGC	7 cut(s)	57, 77, 138, 264, 309, 312, 684
AclWI	GGATC	2 cut(s)	120, 299
AcvI	CACGTG	1 cut(s)	425
AfaI	GTAC	2 cut(s)	63, 666
AfiI	CCNNNNNNNGG	2 cut(s)	42, 63
AflIII	ACRYGT	1 cut(s)	805
AjnI	CCWGG	1 cut(s)	818
Alw21I	GWGCWC	2 cut(s)	35, 357
Alw26I	GTCTC	1 cut(s)	109
AlwI	GGATC	2 cut(s)	120, 299
AlwNI	CAGNNNCTG	1 cut(s)	530
Aor13HI	TCCGGA	1 cut(s)	326
ApeKI	GCWGC	2 cut(s)	260, 479
Asp700I	GAANNNNTTC	1 cut(s)	391
AspLEI	GCGC	1 cut(s)	208
AspS9I	GGNCC	2 cut(s)	160, 737
AsuHPI	GGTGA	3 cut(s)	85, 722, 731
AvaII	GGWCC	2 cut(s)	160, 737
BanII	GRGCYC	3 cut(s)	35, 49, 357
BbrPI	CACGTG	1 cut(s)	425
Bbv12I	GWGCWC	2 cut(s)	35, 357
BbvI	GCAGC	2 cut(s)	247, 466
BccI	CCATC	4 cut(s)	103, 151, 542, 721
BceAI	ACGGC	3 cut(s)	44, 80, 299
BcgI	CGANNNNNNTGC	2 cut(s)	571, 605
BciT130I	CCWGG	1 cut(s)	820
BcoDI	GTCTC	1 cut(s)	109
BfaI	CTAG	1 cut(s)	620
BfmI	CTRYAG	1 cut(s)	471
BfuAI	ACCTGC	1 cut(s)	698
BisI	GCNGC	5 cut(s)	77, 261, 264, 312, 480
BlsI	GCNGC	5 cut(s)	78, 262, 265, 313, 481
Bme1390I	CCNGG	1 cut(s)	820
Bme18I	GGWCC	2 cut(s)	160, 737
BmgT120I	GGNCC	2 cut(s)	160, 737
BmrFI	CCNGG	1 cut(s)	820
BmsI	GCATC	3 cut(s)	99, 155, 579
BplI	GAGNNNNNCTC	2 cut(s)	17, 49
BpmI	CTGGAG	1 cut(s)	135
BsaAI	YACGTR	1 cut(s)	425
BsaJI	CCNNGG	1 cut(s)	293
BsaWI	WCCGGW	1 cut(s)	326
Bsc4I	CCNNNNNNNGG	2 cut(s)	42, 63
Bse118I	RCCGGY	1 cut(s)	140
Bse1I	ACTGG	3 cut(s)	245, 613, 672
Bse3DI	GCAATG	1 cut(s)	702
BseAI	TCCGGA	1 cut(s)	326
BseBI	CCWGG	1 cut(s)	820
BseDI	CCNNGG	1 cut(s)	293
BseGI	GGATG	1 cut(s)	790
BseLI	CCNNNNNNNGG	2 cut(s)	42, 63
BseMI	GCAATG	1 cut(s)	702
BseMII	CTCAG	2 cut(s)	293, 387
BseNI	ACTGG	3 cut(s)	245, 613, 672
BseRI	GAGGAG	2 cut(s)	183, 403
BseXI	GCAGC	2 cut(s)	247, 466
Bsh1236I	CGCG	1 cut(s)	206
BsiHKAI	GWGCWC	2 cut(s)	35, 357
BsiSI	CCGG	3 cut(s)	36, 141, 327
BsiWI	CGTACG	1 cut(s)	61
BslFI	GGGAC	1 cut(s)	592
BslI	CCNNNNNNNGG	2 cut(s)	42, 63
BsmAI	GTCTC	1 cut(s)	109
BsmBI	CGTCTC	1 cut(s)	109
BsmFI	GGGAC	1 cut(s)	592
BsmI	GAATGC	1 cut(s)	759
Bsp1286I	GDGCHC	3 cut(s)	35, 49, 357
Bsp13I	TCCGGA	1 cut(s)	326
Bsp143I	GATC	2 cut(s)	112, 304
BspACI	CCGC	7 cut(s)	57, 77, 138, 264, 309, 312, 684
BspCNI	CTCAG	2 cut(s)	292, 388
BspEI	TCCGGA	1 cut(s)	326
BspFNI	CGCG	1 cut(s)	206
BspMI	ACCTGC	1 cut(s)	698
BspPI	GGATC	2 cut(s)	120, 299
BsrDI	GCAATG	1 cut(s)	702
BsrFI	RCCGGY	1 cut(s)	140
BsrI	ACTGG	3 cut(s)	245, 613, 672
BssAI	RCCGGY	1 cut(s)	140
BssECI	CCNNGG	1 cut(s)	293
BssMI	GATC	2 cut(s)	112, 304
BssT1I	CCWWGG	1 cut(s)	293
Bst2UI	CCWGG	1 cut(s)	820
Bst4CI	ACNGT	4 cut(s)	376, 392, 679, 796
BstBAI	YACGTR	1 cut(s)	425
BstDEI	CTNAG	3 cut(s)	279, 396, 435
BstF5I	GGATG	1 cut(s)	790
BstFNI	CGCG	1 cut(s)	206
BstHHI	GCGC	1 cut(s)	208
BstKTI	GATC	2 cut(s)	115, 307
BstMAI	GTCTC	1 cut(s)	109
BstMBI	GATC	2 cut(s)	112, 304
BstMWI	GCNNNNNNNGC	8 cut(s)	73, 152, 272, 289, 361, 476, 515, 644
BstNI	CCWGG	1 cut(s)	820
BstSCI	CCNGG	1 cut(s)	818
BstSFI	CTRYAG	1 cut(s)	471
BstUI	CGCG	1 cut(s)	206
BstV1I	GCAGC	2 cut(s)	247, 466
BstX2I	RGATCY	1 cut(s)	112
BstYI	RGATCY	1 cut(s)	112
BtgZI	GCGATG	3 cut(s)	170, 509, 740
BtsCI	GGATG	1 cut(s)	790
BtsI	GCAGTG	1 cut(s)	525
BtsIMutI	CAGTG	3 cut(s)	92, 525, 801
BveI	ACCTGC	1 cut(s)	698
CaiI	CAGNNNCTG	1 cut(s)	530
CfoI	GCGC	1 cut(s)	208
Cfr10I	RCCGGY	1 cut(s)	140
Cfr13I	GGNCC	2 cut(s)	160, 737
CseI	GACGC	3 cut(s)	202, 476, 732
CsiI	ACCWGGT	1 cut(s)	818
Csp6I	GTAC	2 cut(s)	62, 665
CspCI	CAANNNNNGTGG	2 cut(s)	8, 43
CviAII	CATG	1 cut(s)	455
CviQI	GTAC	2 cut(s)	62, 665
DdeI	CTNAG	3 cut(s)	279, 396, 435
DpnI	GATC	2 cut(s)	114, 306
DpnII	GATC	2 cut(s)	112, 304
EciI	GGCGGA	1 cut(s)	127
Ecl136II	GAGCTC	2 cut(s)	33, 355
Eco130I	CCWWGG	1 cut(s)	293
Eco24I	GRGCYC	3 cut(s)	35, 49, 357
Eco47I	GGWCC	2 cut(s)	160, 737
Eco53kI	GAGCTC	2 cut(s)	33, 355
Eco72I	CACGTG	1 cut(s)	425
EcoICRI	GAGCTC	2 cut(s)	33, 355
EcoRII	CCWGG	1 cut(s)	818
EcoT14I	CCWWGG	1 cut(s)	293
EcoT22I	ATGCAT	1 cut(s)	759
EcoT38I	GRGCYC	3 cut(s)	35, 49, 357
ErhI	CCWWGG	1 cut(s)	293
Esp3I	CGTCTC	1 cut(s)	109
FaeI	CATG	1 cut(s)	458
FaiI	YATR	5 cut(s)	198, 456, 473, 689, 777
FaqI	GGGAC	1 cut(s)	592
FatI	CATG	1 cut(s)	454
FauI	CCCGC	1 cut(s)	316
Fnu4HI	GCNGC	5 cut(s)	77, 261, 264, 312, 480
FokI	GGATG	1 cut(s)	797
FriOI	GRGCYC	3 cut(s)	35, 49, 357
Fsp4HI	GCNGC	5 cut(s)	77, 261, 264, 312, 480
FspBI	CTAG	1 cut(s)	620
GlaI	GCGC	1 cut(s)	207
GluI	GCNGC	5 cut(s)	77, 261, 264, 312, 480
GsuI	CTGGAG	1 cut(s)	135
HapII	CCGG	3 cut(s)	36, 141, 327
HgaI	GACGC	3 cut(s)	202, 476, 732
HhaI	GCGC	1 cut(s)	208
Hin1II	CATG	1 cut(s)	458
Hin6I	GCGC	1 cut(s)	206
HinP1I	GCGC	1 cut(s)	206
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HinfI	GANTC	5 cut(s)	5, 178, 330, 458, 653
HpaII	CCGG	3 cut(s)	36, 141, 327
HphI	GGTGA	3 cut(s)	85, 722, 731
Hpy166II	GTNNAC	3 cut(s)	217, 428, 571
Hpy188I	TCNGA	5 cut(s)	16, 224, 287, 335, 397
Hpy188III	TCNNGA	5 cut(s)	106, 182, 302, 327, 525
Hpy8I	GTNNAC	3 cut(s)	217, 428, 571
Hpy99I	CGWCG	2 cut(s)	173, 224
HpyCH4III	ACNGT	4 cut(s)	376, 392, 679, 796
HpyCH4IV	ACGT	3 cut(s)	219, 424, 805
HpyCH4V	TGCA	8 cut(s)	90, 146, 482, 518, 592, 605, 707, 757
HpyF10VI	GCNNNNNNNGC	8 cut(s)	73, 152, 272, 289, 361, 476, 515, 644
HpyF3I	CTNAG	3 cut(s)	279, 396, 435
HpySE526I	ACGT	3 cut(s)	219, 424, 805
Hsp92II	CATG	1 cut(s)	458
HspAI	GCGC	1 cut(s)	206
Kpn2I	TCCGGA	1 cut(s)	326
Kzo9I	GATC	2 cut(s)	112, 304
LmnI	GCTCC	6 cut(s)	30, 38, 288, 329, 352, 527
Lsp1109I	GCAGC	2 cut(s)	247, 466
LweI	GCATC	3 cut(s)	99, 155, 579
MabI	ACCWGGT	1 cut(s)	818
MaeI	CTAG	1 cut(s)	620
MaeII	ACGT	3 cut(s)	219, 424, 805
MaeIII	GTNAC	2 cut(s)	541, 814
MalI	GATC	2 cut(s)	114, 306
MboI	GATC	2 cut(s)	112, 304
MboII	GAAGA	1 cut(s)	595
MflI	RGATCY	1 cut(s)	112
MhlI	GDGCHC	3 cut(s)	35, 49, 357
MmeI	TCCRAC	2 cut(s)	202, 762
MnlI	CCTC	2 cut(s)	204, 424
Mph1103I	ATGCAT	1 cut(s)	759
MroI	TCCGGA	1 cut(s)	326
MroXI	GAANNNNTTC	1 cut(s)	391
MseI	TTAA	3 cut(s)	53, 338, 801
MspA1I	CMGCKG	1 cut(s)	266
MspI	CCGG	3 cut(s)	36, 141, 327
MspR9I	CCNGG	1 cut(s)	820
Mva1269I	GAATGC	1 cut(s)	759
MvaI	CCWGG	1 cut(s)	820
MvnI	CGCG	1 cut(s)	206
MwoI	GCNNNNNNNGC	8 cut(s)	73, 152, 272, 289, 361, 476, 515, 644
NdeII	GATC	2 cut(s)	112, 304
NlaIII	CATG	1 cut(s)	458
NmuCI	GTSAC	1 cut(s)	814
NsiI	ATGCAT	1 cut(s)	759
PaqCI	CACCTGC	1 cut(s)	698
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PctI	GAATGC	1 cut(s)	759
PdmI	GAANNNNTTC	1 cut(s)	391
PfeI	GAWTC	5 cut(s)	5, 178, 330, 458, 653
Pfl23II	CGTACG	1 cut(s)	61
PkrI	GCNGC	5 cut(s)	78, 262, 265, 313, 481
PmaCI	CACGTG	1 cut(s)	425
PmlI	CACGTG	1 cut(s)	425
Ppu21I	YACGTR	1 cut(s)	425
Psp124BI	GAGCTC	2 cut(s)	35, 357
Psp6I	CCWGG	1 cut(s)	818
PspCI	CACGTG	1 cut(s)	425
PspGI	CCWGG	1 cut(s)	818
PspLI	CGTACG	1 cut(s)	61
PspPI	GGNCC	2 cut(s)	160, 737
PstNI	CAGNNNCTG	1 cut(s)	530
PsuI	RGATCY	1 cut(s)	112
RsaI	GTAC	2 cut(s)	63, 666
RsaNI	GTAC	2 cut(s)	62, 665
SacI	GAGCTC	2 cut(s)	35, 357
SaqAI	TTAA	3 cut(s)	53, 338, 801
SatI	GCNGC	5 cut(s)	77, 261, 264, 312, 480
Sau3AI	GATC	2 cut(s)	112, 304
Sau96I	GGNCC	2 cut(s)	160, 737
ScrFI	CCNGG	1 cut(s)	820
SduI	GDGCHC	3 cut(s)	35, 49, 357
SexAI	ACCWGGT	1 cut(s)	818
SfaNI	GCATC	3 cut(s)	99, 155, 579
SfcI	CTRYAG	1 cut(s)	471
SgrAI	CRCCGGYG	1 cut(s)	140
SinI	GGWCC	2 cut(s)	160, 737
SsiI	CCGC	7 cut(s)	57, 77, 138, 264, 309, 312, 684
SspMI	CTAG	1 cut(s)	620
SstI	GAGCTC	2 cut(s)	35, 357
StyD4I	CCNGG	1 cut(s)	818
StyI	CCWWGG	1 cut(s)	293
TaaI	ACNGT	4 cut(s)	376, 392, 679, 796
TaiI	ACGT	3 cut(s)	222, 427, 808
TaqI	TCGA	2 cut(s)	107, 360
TauI	GCSGC	3 cut(s)	79, 266, 314
TfiI	GAWTC	5 cut(s)	5, 178, 330, 458, 653
Tru1I	TTAA	3 cut(s)	53, 338, 801
Tru9I	TTAA	3 cut(s)	53, 338, 801
TscAI	CASTG	3 cut(s)	92, 525, 801
TseFI	GTSAC	1 cut(s)	814
TseI	GCWGC	2 cut(s)	260, 479
Tsp45I	GTSAC	1 cut(s)	814
TspDTI	ATGAA	4 cut(s)	269, 471, 645, 801
TspGWI	ACGGA	2 cut(s)	157, 237
TspRI	CASTG	3 cut(s)	92, 525, 801
VpaK11BI	GGWCC	2 cut(s)	160, 737
XmnI	GAANNNNTTC	1 cut(s)	391
XspI	CTAG	1 cut(s)	620
Zsp2I	ATGCAT	1 cut(s)	759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.