Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0013360

Physical Location & Seq

Genomic Coordinates Forward (+)

56302825 .. 56305272

Gene Structure 2448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00122890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGAGGTTTTGATTCACCTGGGATTTTTGGAATTCATTATAGAATCGTACTTATTTATCGAATTGTTGTTTACGGAATATAATTGTGTACAGGACGAGGTACCGACCTATCACTCGACAAGGATCCTTACGCTTGGATACCACGTTAGCCGTACACCGTGTCTAACTCGGCATCACGATCTTGGACAACATGGCGGAGACGGCGTCCTCGCCCGAAGAAGAGGAAAGAAGCTCCGGTCGGAGCTAACTCACAGAGTTGAACTCAATCTCGATGCAGAACCGGAAGTCATTGGCCTTACTCTCCGCCGTCCGATCCCGCCGTCACCGATCCAATGCATCACAAACTTCGTGTCAATGGATCCGATGGCCAACACTTTCTTATTCGTGAGTGTATCACCAGCCATGCTCCACACCCTCAAAGAAATCCCGAAATTCACTCCTCGTGCCCACGCGCTCCGCCTCAACATGGGCACACTCTCCGCCGACTGGTTTTCGGCCATGAATCTCGCCGCCCAACTAGCACCCAAGTCCGTAAGCCTTGGATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004417 GO:0006139 GO:0006725 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009110 GO:0009228 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019438 GO:0034641 GO:0034654 GO:0036172 GO:0042364 GO:0042723 GO:0042724 GO:0043094 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0046483 GO:0071704 GO:0072527 GO:0072528 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00730 ko01100 map00730 map01100

Pfam Domains

Protein Families

Protein Analysis

182

Amino Acids

20.46

Weight (kDa)

7.13

Isoelectric Point (pI)

47.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HK	PF02110	110 - 174	6.2e-10	Hydroxyethylthiazole kinase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24030
fragaria_vesca	FvH4_4g05510 FvH4_4g05510
malus_domestica	MD13G1229700.v1.1
prunus_persica	Prupe.1G056900_v2.0.a1
pyrus_communis	pycom13g20240
rosa_chinensis	RchiOBHm_Chr4g0396631
rosa_laevigata	RLG00000009514
rosa_multiflora	Rmu_sc0006586.1_g000020 Rmu_sc0010969.1_g000006
rosa_roxburghii	Rroxscaffold_2G00122890 Rroxscaffold_5G00341480
rosa_rugosa	Rorug03G0348300
rosa_samantha	Rh4AG070800 Rh4BG068800 Rh4CG076600 Rh4DG066000
rosa_wichuraiana	Rw4G005660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	100
AccB1I	GGYRCC	1 cut(s)	100
AccII	CGCG	1 cut(s)	452
AciI	CCGC	6 cut(s)	195, 304, 317, 457, 480, 510
AclWI	GGATC	6 cut(s)	118, 131, 307, 322, 353, 366
AcoI	YGGCCR	2 cut(s)	366, 495
AcsI	RAATTY	2 cut(s)	32, 431
AcyI	GRCGYC	1 cut(s)	204
AfaI	GTAC	4 cut(s)	50, 90, 102, 154
AfiI	CCNNNNNNNGG	2 cut(s)	466, 486
AgsI	TTSAA	1 cut(s)	260
AjnI	CCWGG	1 cut(s)	18
AluBI	AGCT	2 cut(s)	232, 244
AluI	AGCT	2 cut(s)	232, 244
Alw26I	GTCTC	1 cut(s)	192
AlwI	GGATC	6 cut(s)	118, 131, 307, 322, 353, 366
AoxI	GGCC	3 cut(s)	292, 366, 495
ApoI	RAATTY	2 cut(s)	32, 431
ArsI	GACNNNNNNTTYG	2 cut(s)	335, 367
Asp718I	GGTACC	1 cut(s)	100
AspLEI	GCGC	1 cut(s)	454
AsuHPI	GGTGA	3 cut(s)	8, 315, 387
BaeGI	GKGCMC	2 cut(s)	448, 473
BalI	TGGCCA	1 cut(s)	368
BamHI	GGATCC	2 cut(s)	123, 358
BanI	GGYRCC	1 cut(s)	100
BauI	CACGAG	1 cut(s)	441
BccI	CCATC	1 cut(s)	358
BceAI	ACGGC	4 cut(s)	135, 217, 291, 304
BciT130I	CCWGG	1 cut(s)	20
BciVI	GTATCC	1 cut(s)	131
BcoDI	GTCTC	1 cut(s)	192
BfaI	CTAG	1 cut(s)	518
BfuI	GTATCC	1 cut(s)	131
BisI	GCNGC	1 cut(s)	510
BlsI	GCNGC	1 cut(s)	511
Bme1390I	CCNGG	1 cut(s)	20
BmiI	GGNNCC	3 cut(s)	102, 125, 360
BmrFI	CCNGG	1 cut(s)	20
BmsI	GCATC	3 cut(s)	181, 262, 345
BplI	GAGNNNNNCTC	2 cut(s)	246, 278
BsaHI	GRCGYC	1 cut(s)	204
BsaJI	CCNNGG	2 cut(s)	19, 538
BsaWI	WCCGGW	2 cut(s)	234, 280
BsaXI	ACNNNNNCTCC	2 cut(s)	189, 219
Bsc4I	CCNNNNNNNGG	2 cut(s)	466, 486
Bse1I	ACTGG	1 cut(s)	491
BseBI	CCWGG	1 cut(s)	20
BseDI	CCNNGG	2 cut(s)	19, 538
BseLI	CCNNNNNNNGG	2 cut(s)	466, 486
BseNI	ACTGG	1 cut(s)	491
BseRI	GAGGAG	1 cut(s)	429
BseSI	GKGCMC	2 cut(s)	448, 473
Bsh1236I	CGCG	1 cut(s)	452
Bsh1285I	CGRYCG	1 cut(s)	239
BshFI	GGCC	3 cut(s)	294, 368, 497
BshNI	GGYRCC	1 cut(s)	100
BsiEI	CGRYCG	1 cut(s)	239
BsiSI	CCGG	2 cut(s)	235, 281
BslI	CCNNNNNNNGG	2 cut(s)	466, 486
BsmAI	GTCTC	1 cut(s)	192
BsmBI	CGTCTC	1 cut(s)	192
BsnI	GGCC	3 cut(s)	294, 368, 497
Bsp1286I	GDGCHC	2 cut(s)	448, 473
Bsp1407I	TGTACA	1 cut(s)	88
Bsp143I	GATC	6 cut(s)	123, 178, 312, 327, 358, 542
BspACI	CCGC	6 cut(s)	195, 304, 317, 457, 480, 510
BspANI	GGCC	3 cut(s)	294, 368, 497
BspFNI	CGCG	1 cut(s)	452
BspLI	GGNNCC	3 cut(s)	102, 125, 360
BspPI	GGATC	6 cut(s)	118, 131, 307, 322, 353, 366
BspT107I	GGYRCC	1 cut(s)	100
BsrGI	TGTACA	1 cut(s)	88
BsrI	ACTGG	1 cut(s)	491
BssECI	CCNNGG	2 cut(s)	19, 538
BssMI	GATC	6 cut(s)	123, 178, 312, 327, 358, 542
BssNI	GRCGYC	1 cut(s)	204
BssSI	CACGAG	1 cut(s)	441
BssT1I	CCWWGG	1 cut(s)	538
Bst2BI	CACGAG	1 cut(s)	441
Bst2UI	CCWGG	1 cut(s)	20
Bst4CI	ACNGT	1 cut(s)	159
Bst6I	CTCTTC	1 cut(s)	214
BstACI	GRCGYC	1 cut(s)	204
BstAUI	TGTACA	1 cut(s)	88
BstFNI	CGCG	1 cut(s)	452
BstHHI	GCGC	1 cut(s)	454
BstKTI	GATC	6 cut(s)	126, 181, 315, 330, 361, 545
BstMAI	GTCTC	1 cut(s)	192
BstMBI	GATC	6 cut(s)	123, 178, 312, 327, 358, 542
BstMCI	CGRYCG	1 cut(s)	239
BstMWI	GCNNNNNNNGC	2 cut(s)	201, 518
BstNI	CCWGG	1 cut(s)	20
BstSCI	CCNGG	1 cut(s)	18
BstSLI	GKGCMC	2 cut(s)	448, 473
BstUI	CGCG	1 cut(s)	452
BstX2I	RGATCY	3 cut(s)	123, 358, 542
BstYI	RGATCY	3 cut(s)	123, 358, 542
BsuI	GTATCC	1 cut(s)	131
BsuRI	GGCC	3 cut(s)	294, 368, 497
CfoI	GCGC	1 cut(s)	454
CseI	GACGC	1 cut(s)	193
Csp6I	GTAC	4 cut(s)	49, 89, 101, 153
CviAII	CATG	4 cut(s)	191, 403, 466, 499
CviJI	RGCY	8 cut(s)	150, 232, 244, 294, 368, 401, 497, 537
CviKI_1	RGCY	8 cut(s)	150, 232, 244, 294, 368, 401, 497, 537
CviQI	GTAC	4 cut(s)	49, 89, 101, 153
DpnI	GATC	6 cut(s)	125, 180, 314, 329, 360, 544
DpnII	GATC	6 cut(s)	123, 178, 312, 327, 358, 542
EaeI	YGGCCR	2 cut(s)	366, 495
Eam1104I	CTCTTC	1 cut(s)	214
EarI	CTCTTC	1 cut(s)	214
EciI	GGCGGA	4 cut(s)	210, 293, 446, 469
Eco130I	CCWWGG	1 cut(s)	538
EcoRI	GAATTC	1 cut(s)	32
EcoRII	CCWGG	1 cut(s)	18
EcoT14I	CCWWGG	1 cut(s)	538
EcoT22I	ATGCAT	1 cut(s)	338
ErhI	CCWWGG	1 cut(s)	538
Esp3I	CGTCTC	1 cut(s)	192
FaeI	CATG	4 cut(s)	194, 406, 469, 502
FaiI	YATR	6 cut(s)	41, 81, 192, 404, 467, 500
FatI	CATG	4 cut(s)	190, 402, 465, 498
FauI	CCCGC	1 cut(s)	324
Fnu4HI	GCNGC	1 cut(s)	510
Fsp4HI	GCNGC	1 cut(s)	510
FspBI	CTAG	1 cut(s)	518
GlaI	GCGC	1 cut(s)	453
GluI	GCNGC	1 cut(s)	510
HaeIII	GGCC	3 cut(s)	294, 368, 497
HapII	CCGG	2 cut(s)	235, 281
HgaI	GACGC	1 cut(s)	193
HhaI	GCGC	1 cut(s)	454
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	4 cut(s)	194, 406, 469, 502
Hin6I	GCGC	1 cut(s)	452
HinP1I	GCGC	1 cut(s)	452
HinfI	GANTC	3 cut(s)	13, 44, 502
HpaII	CCGG	2 cut(s)	235, 281
HphI	GGTGA	3 cut(s)	8, 315, 387
Hpy166II	GTNNAC	3 cut(s)	72, 89, 155
Hpy188I	TCNGA	3 cut(s)	241, 312, 363
Hpy188III	TCNNGA	5 cut(s)	176, 269, 385, 427, 546
Hpy8I	GTNNAC	3 cut(s)	72, 89, 155
HpyCH4III	ACNGT	1 cut(s)	159
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	2 cut(s)	275, 336
HpyF10VI	GCNNNNNNNGC	2 cut(s)	201, 518
HpySE526I	ACGT	1 cut(s)	144
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	4 cut(s)	194, 406, 469, 502
HspAI	GCGC	1 cut(s)	452
KpnI	GGTACC	1 cut(s)	104
Kzo9I	GATC	6 cut(s)	123, 178, 312, 327, 358, 542
LmnI	GCTCC	4 cut(s)	237, 241, 411, 459
LpnPI	CCDG	7 cut(s)	5, 32, 77, 248, 294, 411, 472
LweI	GCATC	3 cut(s)	181, 262, 345
MaeI	CTAG	1 cut(s)	518
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	1 cut(s)	321
MalI	GATC	6 cut(s)	125, 180, 314, 329, 360, 544
MboI	GATC	6 cut(s)	123, 178, 312, 327, 358, 542
MboII	GAAGA	2 cut(s)	228, 231
MflI	RGATCY	3 cut(s)	123, 358, 542
MhlI	GDGCHC	2 cut(s)	448, 473
MlsI	TGGCCA	1 cut(s)	368
MluCI	AATT	4 cut(s)	32, 62, 82, 431
MluNI	TGGCCA	1 cut(s)	368
MmeI	TCCRAC	1 cut(s)	219
MnlI	CCTC	6 cut(s)	91, 215, 218, 425, 450, 470
Mox20I	TGGCCA	1 cut(s)	368
Mph1103I	ATGCAT	1 cut(s)	338
MscI	TGGCCA	1 cut(s)	368
Msp20I	TGGCCA	1 cut(s)	368
MspI	CCGG	2 cut(s)	235, 281
MspR9I	CCNGG	1 cut(s)	20
MvaI	CCWGG	1 cut(s)	20
MvnI	CGCG	1 cut(s)	452
MwoI	GCNNNNNNNGC	2 cut(s)	201, 518
NdeII	GATC	6 cut(s)	123, 178, 312, 327, 358, 542
NlaIII	CATG	4 cut(s)	194, 406, 469, 502
NlaIV	GGNNCC	3 cut(s)	102, 125, 360
NmeAIII	GCCGAG	1 cut(s)	148
NmuCI	GTSAC	1 cut(s)	321
NsiI	ATGCAT	1 cut(s)	338
PfeI	GAWTC	3 cut(s)	13, 44, 502
PflFI	GACNNNGTC	1 cut(s)	203
PkrI	GCNGC	1 cut(s)	511
Psp6I	CCWGG	1 cut(s)	18
PspGI	CCWGG	1 cut(s)	18
PspN4I	GGNNCC	3 cut(s)	102, 125, 360
PsuI	RGATCY	3 cut(s)	123, 358, 542
PsyI	GACNNNGTC	1 cut(s)	203
RsaI	GTAC	4 cut(s)	50, 90, 102, 154
RsaNI	GTAC	4 cut(s)	49, 89, 101, 153
SatI	GCNGC	1 cut(s)	510
Sau3AI	GATC	6 cut(s)	123, 178, 312, 327, 358, 542
ScrFI	CCNGG	1 cut(s)	20
SduI	GDGCHC	2 cut(s)	448, 473
SetI	ASST	7 cut(s)	9, 21, 102, 110, 147, 234, 246
SfaNI	GCATC	3 cut(s)	181, 262, 345
Sse9I	AATT	4 cut(s)	32, 62, 82, 431
SsiI	CCGC	6 cut(s)	195, 304, 317, 457, 480, 510
SspMI	CTAG	1 cut(s)	518
StyD4I	CCNGG	1 cut(s)	18
StyI	CCWWGG	1 cut(s)	538
TaaI	ACNGT	1 cut(s)	159
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	3 cut(s)	60, 116, 270
TasI	AATT	4 cut(s)	32, 62, 82, 431
TatI	WGTACW	1 cut(s)	88
TauI	GCSGC	1 cut(s)	512
TfiI	GAWTC	3 cut(s)	13, 44, 502
TseFI	GTSAC	1 cut(s)	321
Tsp45I	GTSAC	1 cut(s)	321
TspDTI	ATGAA	2 cut(s)	25, 515
TspGWI	ACGGA	2 cut(s)	89, 520
Tth111I	GACNNNGTC	1 cut(s)	203
XapI	RAATTY	2 cut(s)	32, 431
XspI	CTAG	1 cut(s)	518
Zsp2I	ATGCAT	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.