Prupe.1G056900_v2.0.a1

Hydroxyethylthiazole

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0013360
Physical Location & Seq
Reverse (-)
4061962 .. 4063154
1193 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G056900.1

Sequence Viewer

Length: 852 bp
ATGGAAATCAAGTCCAACTACAAGGAAGAAGCACCAGAGGCAATCATGTGGTCCCAGAAAGCATGGGCCCTACTATCCACAGTTCGATCCCAATCACCGCTCATCCAATGCATCACAAACTTCGTGTCAATGGATCTGATGGCCAACACTCTCTTGTCCGCGGGTGCATCACCCGCCATGCTCCACACCTTGGAAGAGCTCCCGGAATTCACGCCTCAGGTCCACGCGCTCTGCGTCAACGTGGGCACACTTTCCGCCGGCTGGCTACCGGCCATGAAGCTAGCCGCTGAACTGGCACATAAGTCCGGTAAGCCTTGGGTTCTCGACCCAGTTGCGGCCGGTGCCTCCGGTTTCCGGTTAAAGGCTTGCTTGGAGCTTGTGGAGCTTAAGCCTACTGTTATCAGGGGAAATGGGTCCGAGATAATCGCCCTCGCCAAGGCTTCTGTGGAACCCACCAAGGGTGTAGACAGTTCCCATGAGTCAACAGATGCAATAGAGTCAGCAAAGTCACTGGCTCAAGCCAGTGGTGCCATAGTGGCAGTTTCTGGAGCTGTTGATATTGTTACAGATGGGAAGAGAATTGTTGGTGCTCACAATGGGGTTGCCATGATGACAAAGATAACAGCAACAGGGTGTTCAGTCACTGCCCTCATTGCTGCCTTTGTTTCGGTTGATCAATCACATGTATTGGAAGCTACAGCTTCGGCGTTATCGGTATTTGGGATTGCTGGTGAGATGGGAATGAAAATGGCAAATGGTCCAGCGTCATTGCGGATGCATTTGATAGATTCACTTTATGGGATCGATGAAGCGTGTGTGCTTTCTCATGCTAAAATCACCAGCTTGTCGTGA

Protein Analysis

284

Amino Acids

29.42

Weight (kDa)

5.75

Isoelectric Point (pI)

31.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013360)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24030
fragaria_vesca FvH4_4g05510 FvH4_4g05510
malus_domestica MD13G1229700.v1.1
prunus_persica Prupe.1G056900_v2.0.a1
pyrus_communis pycom13g20240
rosa_chinensis RchiOBHm_Chr4g0396631
rosa_laevigata RLG00000009514
rosa_multiflora Rmu_sc0006586.1_g000020 Rmu_sc0010969.1_g000006
rosa_roxburghii Rroxscaffold_2G00122890 Rroxscaffold_5G00341480
rosa_rugosa Rorug03G0348300
rosa_samantha Rh4AG070800 Rh4BG068800 Rh4CG076600 Rh4DG066000
rosa_wichuraiana Rw4G005660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 341, 527
AccB7I CCANNNNNTGG 1 cut(s) 190
AccBSI CCGCTC 1 cut(s) 100
AccI GTMKAC 1 cut(s) 465
AccII CGCG 2 cut(s) 161, 227
AciI CCGC 8 cut(s) 98, 159, 161, 174, 255, 285, 335, 772
AclWI GGATC 3 cut(s) 81, 141, 809
AcoI YGGCCR 3 cut(s) 141, 270, 336
AcsI RAATTY 1 cut(s) 206
AfiI CCNNNNNNNGG 7 cut(s) 190, 261, 334, 354, 361, 436, 458
AflII CTTAAG 1 cut(s) 386
AflIII ACRYGT 1 cut(s) 682
AluBI AGCT 8 cut(s) 199, 280, 376, 385, 551, 695, 701, 843
AluI AGCT 8 cut(s) 199, 280, 376, 385, 551, 695, 701, 843
Alw21I GWGCWC 2 cut(s) 201, 592
AlwI GGATC 3 cut(s) 81, 141, 809
AlwNI CAGNNNCTG 2 cut(s) 545, 644
AoxI GGCC 4 cut(s) 66, 141, 270, 336
ApaI GGGCCC 1 cut(s) 70
ApeKI GCWGC 1 cut(s) 656
ApoI RAATTY 1 cut(s) 206
ArsI GACNNNNNNTTYG 2 cut(s) 110, 142
AspLEI GCGC 1 cut(s) 229
AspS9I GGNCC 6 cut(s) 51, 66, 67, 220, 414, 758
AsuC2I CCSGG 1 cut(s) 203
AsuHPI GGTGA 4 cut(s) 87, 162, 743, 829
AsuNHI GCTAGC 1 cut(s) 280
AvaII GGWCC 4 cut(s) 51, 220, 414, 758
AxyI CCTNAGG 1 cut(s) 216
BaeGI GKGCMC 2 cut(s) 70, 248
BalI TGGCCA 1 cut(s) 143
BanI GGYRCC 2 cut(s) 341, 527
BanII GRGCYC 2 cut(s) 70, 201
Bbv12I GWGCWC 2 cut(s) 201, 592
BbvI GCAGC 1 cut(s) 643
BccI CCATC 3 cut(s) 133, 563, 730
BcgI CGANNNNNNTGC 2 cut(s) 314, 348
BclI TGATCA 1 cut(s) 673
BcnI CCSGG 1 cut(s) 203
BfaI CTAG 1 cut(s) 281
BfmI CTRYAG 1 cut(s) 696
BfrI CTTAAG 1 cut(s) 386
BglI GCCNNNNNGGC 1 cut(s) 536
BisI GCNGC 3 cut(s) 285, 336, 657
BlsI GCNGC 3 cut(s) 286, 337, 658
Bme1390I CCNGG 1 cut(s) 203
Bme18I GGWCC 4 cut(s) 51, 220, 414, 758
BmgT120I GGNCC 6 cut(s) 51, 66, 67, 220, 414, 758
BmiI GGNNCC 6 cut(s) 53, 68, 343, 415, 450, 529
BmrFI CCNGG 1 cut(s) 203
BmrI ACTGGG 1 cut(s) 323
BmsI GCATC 4 cut(s) 120, 176, 478, 765
BmtI GCTAGC 1 cut(s) 284
BmuI ACTGGG 1 cut(s) 323
BpmI CTGGAG 1 cut(s) 567
BpuEI CTTGAG 1 cut(s) 501
BpuMI CCSGG 1 cut(s) 203
Bsa29I ATCGAT 1 cut(s) 804
BsaBI GATNNNNATC 1 cut(s) 91
BsaJI CCNNGG 5 cut(s) 159, 189, 314, 435, 456
BsaWI WCCGGW 3 cut(s) 305, 347, 354
Bsc4I CCNNNNNNNGG 7 cut(s) 190, 261, 334, 354, 361, 436, 458
Bse118I RCCGGY 3 cut(s) 257, 268, 338
Bse1I ACTGG 4 cut(s) 297, 329, 516, 522
Bse21I CCTNAGG 1 cut(s) 216
Bse3DI GCAATG 2 cut(s) 651, 767
Bse8I GATNNNNATC 1 cut(s) 91
BseCI ATCGAT 1 cut(s) 804
BseDI CCNNGG 5 cut(s) 159, 189, 314, 435, 456
BseGI GGATG 2 cut(s) 102, 780
BseJI GATNNNNATC 1 cut(s) 91
BseLI CCNNNNNNNGG 7 cut(s) 190, 261, 334, 354, 361, 436, 458
BseMI GCAATG 2 cut(s) 651, 767
BseMII CTCAG 1 cut(s) 230
BseNI ACTGG 4 cut(s) 297, 329, 516, 522
BseSI GKGCMC 2 cut(s) 70, 248
BseX3I CGGCCG 1 cut(s) 336
BseXI GCAGC 1 cut(s) 643
Bsh1236I CGCG 2 cut(s) 161, 227
Bsh1285I CGRYCG 1 cut(s) 339
BshFI GGCC 4 cut(s) 68, 143, 272, 338
BshNI GGYRCC 2 cut(s) 341, 527
BshVI ATCGAT 1 cut(s) 804
BsiEI CGRYCG 1 cut(s) 339
BsiHKAI GWGCWC 2 cut(s) 201, 592
BsiSI CCGG 7 cut(s) 203, 258, 269, 306, 339, 348, 355
BslFI GGGAC 1 cut(s) 37
BslI CCNNNNNNNGG 7 cut(s) 190, 261, 334, 354, 361, 436, 458
BsmFI GGGAC 1 cut(s) 37
BsnI GGCC 4 cut(s) 68, 143, 272, 338
Bsp120I GGGCCC 1 cut(s) 66
Bsp1286I GDGCHC 4 cut(s) 70, 201, 248, 592
Bsp143I GATC 4 cut(s) 86, 133, 673, 801
BspACI CCGC 8 cut(s) 98, 159, 161, 174, 255, 285, 335, 772
BspANI GGCC 4 cut(s) 68, 143, 272, 338
BspCNI CTCAG 1 cut(s) 229
BspDI ATCGAT 1 cut(s) 804
BspFNI CGCG 2 cut(s) 161, 227
BspLI GGNNCC 6 cut(s) 53, 68, 343, 415, 450, 529
BspOI GCTAGC 1 cut(s) 284
BspPI GGATC 3 cut(s) 81, 141, 809
BspQI GCTCTTC 1 cut(s) 189
BspT107I GGYRCC 2 cut(s) 341, 527
BspTI CTTAAG 1 cut(s) 386
BsrBI CCGCTC 1 cut(s) 100
BsrDI GCAATG 2 cut(s) 651, 767
BsrFI RCCGGY 3 cut(s) 257, 268, 338
BsrI ACTGG 4 cut(s) 297, 329, 516, 522
BssAI RCCGGY 3 cut(s) 257, 268, 338
BssECI CCNNGG 5 cut(s) 159, 189, 314, 435, 456
BssMI GATC 4 cut(s) 86, 133, 673, 801
BssT1I CCWWGG 4 cut(s) 189, 314, 435, 456
Bst4CI ACNGT 3 cut(s) 82, 397, 470
Bst6I CTCTTC 2 cut(s) 189, 569
BstAFI CTTAAG 1 cut(s) 386
BstC8I GCNNGC 4 cut(s) 259, 263, 282, 367
BstDEI CTNAG 1 cut(s) 216
BstDSI CCRYGG 1 cut(s) 159
BstENI CCTNNNNNAGG 1 cut(s) 434
BstF5I GGATG 2 cut(s) 102, 780
BstFNI CGCG 2 cut(s) 161, 227
BstHHI GCGC 1 cut(s) 229
BstKTI GATC 4 cut(s) 89, 136, 676, 804
BstMBI GATC 4 cut(s) 86, 133, 673, 801
BstMCI CGRYCG 1 cut(s) 339
BstMWI GCNNNNNNNGC 8 cut(s) 38, 173, 293, 341, 382, 527, 536, 653
BstNSI RCATGY 1 cut(s) 686
BstSCI CCNGG 1 cut(s) 201
BstSFI CTRYAG 1 cut(s) 696
BstSLI GKGCMC 2 cut(s) 70, 248
BstUI CGCG 2 cut(s) 161, 227
BstV1I GCAGC 1 cut(s) 643
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BstZI CGGCCG 1 cut(s) 336
Bsu15I ATCGAT 1 cut(s) 804
Bsu36I CCTNAGG 1 cut(s) 216
BsuRI GGCC 4 cut(s) 68, 143, 272, 338
BsuTUI ATCGAT 1 cut(s) 804
BtgI CCRYGG 1 cut(s) 159
BtsCI GGATG 2 cut(s) 102, 780
BtsI GCAGTG 1 cut(s) 642
BtsIMutI CAGTG 3 cut(s) 509, 529, 642
Cac8I GCNNGC 4 cut(s) 259, 263, 282, 367
CaiI CAGNNNCTG 2 cut(s) 545, 644
CfoI GCGC 1 cut(s) 229
Cfr10I RCCGGY 3 cut(s) 257, 268, 338
Cfr13I GGNCC 6 cut(s) 51, 66, 67, 220, 414, 758
Cfr42I CCGCGG 1 cut(s) 162
ClaI ATCGAT 1 cut(s) 804
CseI GACGC 2 cut(s) 223, 753
CviAII CATG 8 cut(s) 46, 63, 178, 274, 476, 607, 683, 827
DdeI CTNAG 1 cut(s) 216
DpnI GATC 4 cut(s) 88, 135, 675, 803
DpnII GATC 4 cut(s) 86, 133, 673, 801
EaeI YGGCCR 3 cut(s) 141, 270, 336
EagI CGGCCG 1 cut(s) 336
Eam1104I CTCTTC 2 cut(s) 189, 569
EarI CTCTTC 2 cut(s) 189, 569
EciI GGCGGA 1 cut(s) 244
Ecl136II GAGCTC 1 cut(s) 199
EclXI CGGCCG 1 cut(s) 336
Eco130I CCWWGG 4 cut(s) 189, 314, 435, 456
Eco24I GRGCYC 2 cut(s) 70, 201
Eco47I GGWCC 4 cut(s) 51, 220, 414, 758
Eco52I CGGCCG 1 cut(s) 336
Eco53kI GAGCTC 1 cut(s) 199
Eco81I CCTNAGG 1 cut(s) 216
EcoICRI GAGCTC 1 cut(s) 199
EcoNI CCTNNNNNAGG 1 cut(s) 434
EcoO109I RGGNCCY 1 cut(s) 67
EcoRI GAATTC 1 cut(s) 206
EcoT14I CCWWGG 4 cut(s) 189, 314, 435, 456
EcoT22I ATGCAT 2 cut(s) 113, 780
EcoT38I GRGCYC 2 cut(s) 70, 201
ErhI CCWWGG 4 cut(s) 189, 314, 435, 456
FaeI CATG 8 cut(s) 49, 66, 181, 277, 479, 610, 686, 830
FalI AAGNNNNNCTT 2 cut(s) 353, 385
FaqI GGGAC 1 cut(s) 37
FatI CATG 8 cut(s) 45, 62, 177, 273, 475, 606, 682, 826
FauI CCCGC 2 cut(s) 154, 181
FbaI TGATCA 1 cut(s) 673
FblI GTMKAC 1 cut(s) 465
Fnu4HI GCNGC 3 cut(s) 285, 336, 657
FokI GGATG 2 cut(s) 89, 787
FriOI GRGCYC 2 cut(s) 70, 201
Fsp4HI GCNGC 3 cut(s) 285, 336, 657
FspBI CTAG 1 cut(s) 281
GlaI GCGC 1 cut(s) 228
GluI GCNGC 3 cut(s) 285, 336, 657
GsuI CTGGAG 1 cut(s) 567
HaeIII GGCC 4 cut(s) 68, 143, 272, 338
HapII CCGG 7 cut(s) 203, 258, 269, 306, 339, 348, 355
HgaI GACGC 2 cut(s) 223, 753
HhaI GCGC 1 cut(s) 229
Hin1II CATG 8 cut(s) 49, 66, 181, 277, 479, 610, 686, 830
Hin6I GCGC 1 cut(s) 227
HinP1I GCGC 1 cut(s) 227
HincII GTYRAC 2 cut(s) 238, 483
HindII GTYRAC 2 cut(s) 238, 483
HinfI GANTC 3 cut(s) 479, 497, 788
HpaII CCGG 7 cut(s) 203, 258, 269, 306, 339, 348, 355
HphI GGTGA 4 cut(s) 87, 162, 743, 829
Hpy166II GTNNAC 4 cut(s) 223, 238, 466, 483
Hpy188I TCNGA 2 cut(s) 138, 418
Hpy188III TCNNGA 3 cut(s) 323, 546, 849
Hpy8I GTNNAC 4 cut(s) 223, 238, 466, 483
HpyCH4III ACNGT 3 cut(s) 82, 397, 470
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 4 cut(s) 111, 167, 491, 778
HpyF10VI GCNNNNNNNGC 8 cut(s) 38, 173, 293, 341, 382, 527, 536, 653
HpyF3I CTNAG 1 cut(s) 216
HpySE526I ACGT 1 cut(s) 240
Hsp92II CATG 8 cut(s) 49, 66, 181, 277, 479, 610, 686, 830
HspAI GCGC 1 cut(s) 227
KroI GCCGGC 1 cut(s) 257
KroNI GCCGGC 1 cut(s) 259
Ksp22I TGATCA 1 cut(s) 673
KspI CCGCGG 1 cut(s) 162
Kzo9I GATC 4 cut(s) 86, 133, 673, 801
LguI GCTCTTC 1 cut(s) 189
LmnI GCTCC 5 cut(s) 186, 204, 373, 382, 548
Lsp1109I GCAGC 1 cut(s) 643
LweI GCATC 4 cut(s) 120, 176, 478, 765
MaeI CTAG 1 cut(s) 281
MaeII ACGT 1 cut(s) 240
MaeIII GTNAC 3 cut(s) 507, 562, 640
MalI GATC 4 cut(s) 88, 135, 675, 803
MbiI CCGCTC 1 cut(s) 100
MboI GATC 4 cut(s) 86, 133, 673, 801
MboII GAAGA 3 cut(s) 38, 206, 586
MflI RGATCY 1 cut(s) 133
MhlI GDGCHC 4 cut(s) 70, 201, 248, 592
MlsI TGGCCA 1 cut(s) 143
MluCI AATT 2 cut(s) 206, 579
MluNI TGGCCA 1 cut(s) 143
MlyI GAGTC 2 cut(s) 488, 506
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 5 cut(s) 31, 225, 355, 440, 659
Mox20I TGGCCA 1 cut(s) 143
Mph1103I ATGCAT 2 cut(s) 113, 780
MroNI GCCGGC 1 cut(s) 257
MscI TGGCCA 1 cut(s) 143
MseI TTAA 2 cut(s) 359, 387
Msp20I TGGCCA 1 cut(s) 143
MspA1I CMGCKG 2 cut(s) 161, 287
MspCI CTTAAG 1 cut(s) 386
MspI CCGG 7 cut(s) 203, 258, 269, 306, 339, 348, 355
MspR9I CCNGG 1 cut(s) 203
MvnI CGCG 2 cut(s) 161, 227
MwoI GCNNNNNNNGC 8 cut(s) 38, 173, 293, 341, 382, 527, 536, 653
NaeI GCCGGC 1 cut(s) 259
NciI CCSGG 1 cut(s) 203
NdeII GATC 4 cut(s) 86, 133, 673, 801
NgoMIV GCCGGC 1 cut(s) 257
NheI GCTAGC 1 cut(s) 280
NlaIII CATG 8 cut(s) 49, 66, 181, 277, 479, 610, 686, 830
NlaIV GGNNCC 6 cut(s) 53, 68, 343, 415, 450, 529
NmuCI GTSAC 2 cut(s) 507, 640
NsiI ATGCAT 2 cut(s) 113, 780
NspI RCATGY 1 cut(s) 686
PciI ACATGT 1 cut(s) 682
PciSI GCTCTTC 1 cut(s) 189
PcsI WCGNNNNNNNCGW 1 cut(s) 231
PdiI GCCGGC 1 cut(s) 259
PfeI GAWTC 1 cut(s) 788
PflMI CCANNNNNTGG 1 cut(s) 190
PfoI TCCNGGA 1 cut(s) 201
PkrI GCNGC 3 cut(s) 286, 337, 658
PleI GAGTC 2 cut(s) 487, 505
PpsI GAGTC 2 cut(s) 487, 505
PscI ACATGT 1 cut(s) 682
Psp124BI GAGCTC 1 cut(s) 201
PspN4I GGNNCC 6 cut(s) 53, 68, 343, 415, 450, 529
PspOMI GGGCCC 1 cut(s) 66
PspPI GGNCC 6 cut(s) 51, 66, 67, 220, 414, 758
PstNI CAGNNNCTG 2 cut(s) 545, 644
PsuI RGATCY 1 cut(s) 133
SacI GAGCTC 1 cut(s) 201
SacII CCGCGG 1 cut(s) 162
SapI GCTCTTC 1 cut(s) 189
SaqAI TTAA 2 cut(s) 359, 387
SatI GCNGC 3 cut(s) 285, 336, 657
Sau3AI GATC 4 cut(s) 86, 133, 673, 801
Sau96I GGNCC 6 cut(s) 51, 66, 67, 220, 414, 758
SchI GAGTC 2 cut(s) 488, 506
ScrFI CCNGG 1 cut(s) 203
SduI GDGCHC 4 cut(s) 70, 201, 248, 592
SfaNI GCATC 4 cut(s) 120, 176, 478, 765
SfcI CTRYAG 1 cut(s) 696
Sfr303I CCGCGG 1 cut(s) 162
SgrBI CCGCGG 1 cut(s) 162
SinI GGWCC 4 cut(s) 51, 220, 414, 758
SmlI CTYRAG 2 cut(s) 386, 516
SmoI CTYRAG 2 cut(s) 386, 516
Sse9I AATT 2 cut(s) 206, 579
SsiI CCGC 8 cut(s) 98, 159, 161, 174, 255, 285, 335, 772
SspMI CTAG 1 cut(s) 281
SstI GAGCTC 1 cut(s) 201
StyD4I CCNGG 1 cut(s) 201
StyI CCWWGG 4 cut(s) 189, 314, 435, 456
TaaI ACNGT 3 cut(s) 82, 397, 470
TaiI ACGT 1 cut(s) 243
TaqI TCGA 3 cut(s) 85, 324, 804
TasI AATT 2 cut(s) 206, 579
TauI GCSGC 2 cut(s) 287, 338
TfiI GAWTC 1 cut(s) 788
Tru1I TTAA 2 cut(s) 359, 387
Tru9I TTAA 2 cut(s) 359, 387
TscAI CASTG 3 cut(s) 516, 529, 649
TseFI GTSAC 2 cut(s) 507, 640
TseI GCWGC 1 cut(s) 656
Tsp45I GTSAC 2 cut(s) 507, 640
TspDTI ATGAA 3 cut(s) 290, 758, 822
TspRI CASTG 3 cut(s) 516, 529, 649
Van91I CCANNNNNTGG 1 cut(s) 190
Vha464I CTTAAG 1 cut(s) 386
VpaK11BI GGWCC 4 cut(s) 51, 220, 414, 758
XagI CCTNNNNNAGG 1 cut(s) 434
XapI RAATTY 1 cut(s) 206
XceI RCATGY 1 cut(s) 686
XcmI CCANNNNNNNNNTGG 1 cut(s) 442
XmiI GTMKAC 1 cut(s) 465
XspI CTAG 1 cut(s) 281
Zsp2I ATGCAT 2 cut(s) 113, 780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.