Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0013360

Physical Location & Seq

Genomic Coordinates Reverse (-)

10003327 .. 10007701

Gene Structure 4375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00341480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGAAAGCAACAAGGAAGAAGCAGAGGCAATCCTCTGGGCCAGGAAGTCGTGGGCCCTACTCTCCGCCGTCCGATCCCAGTCGCCGCTGATCCAATGCATCACAAACTTCGTGTCAATGGATCTCATGGCCAACACCCTCTTATCCGCCGGTGCATCACCGGCCATGCTCCACGCCCTCGAAGAAATCCCGGACTTCACGCCTCAGGTCCACGCGCTCTGCCTCAACGTCGGCACCCTCTCCGCCGACTGGTTGCCGGCCATGAAGCTCGCCGCCCAACTGGCACGCAAGTCCGGTAAGCCCTGGGTTCTCGACCCTGTCGCCGCCGGCGCTTCCGGTTTCCGGTTGAAGGCTTGTTTGGAGCTTGTGGAGCTTAAGCCGACTGTTATACGAGGAAATGCGTCCGAGATTATCGCCCTCGCCAACGCTTCTGTGGGACCCACTAAGGGTGTAGACAGTTCCCACAAGTCCACAGATGCAGTGGAATCGGCAAAGTCATTGGCTCGAGCCAGCGGTGCCGTAGTTGCAGTTTCCGGAGCTGTGGACATTGTCACAGATGGGGAGAGGGTTGTTGGTGCTCATAATGGGGTTGCCATGATGACAAAGATTACAGCAACAGGGTGTTCAGTCACTGCTCTCATTGCTGCTTTTATTGCTGTTGATCAAACACATGTACTGGAAGCTACAGCTGCGGCGTTATCCTTATTTGGGATTGCGGGAGAGATGGGAATGGAAATGGCAAATGGTCCGGCAACCTTGCGGATTCACTTGATAGATTCACTCCACGGACTGGATGAAGCGTGTGTGCTTTCTCGTGTTAAAATCACCAGCTTGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004417 GO:0006139 GO:0006725 GO:0006766 GO:0006767 GO:0006772 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009110 GO:0009228 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019438 GO:0034641 GO:0034654 GO:0036172 GO:0042364 GO:0042723 GO:0042724 GO:0043094 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0046483 GO:0071704 GO:0072527 GO:0072528 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00730 ko01100 map00730 map01100

Pfam Domains

Protein Families

Protein Analysis

279

Amino Acids

28.89

Weight (kDa)

5.8

Isoelectric Point (pI)

24.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HK	PF02110	21 - 265	6.6e-73	Hydroxyethylthiazole kinase family
Phos_pyr_kin	PF08543	90 - 232	3.4e-06	Phosphomethylpyrimidine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24030
fragaria_vesca	FvH4_4g05510 FvH4_4g05510
malus_domestica	MD13G1229700.v1.1
prunus_persica	Prupe.1G056900_v2.0.a1
pyrus_communis	pycom13g20240
rosa_chinensis	RchiOBHm_Chr4g0396631
rosa_laevigata	RLG00000009514
rosa_multiflora	Rmu_sc0006586.1_g000020 Rmu_sc0010969.1_g000006
rosa_roxburghii	Rroxscaffold_2G00122890 Rroxscaffold_5G00341480
rosa_rugosa	Rorug03G0348300
rosa_samantha	Rh4AG070800 Rh4BG068800 Rh4CG076600 Rh4DG066000
rosa_wichuraiana	Rw4G005660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	233, 515
AccB7I	CCANNNNNTGG	1 cut(s)	790
AccI	GTMKAC	1 cut(s)	453
AccII	CGCG	1 cut(s)	215
AccIII	TCCGGA	1 cut(s)	533
AclWI	GGATC	3 cut(s)	69, 85, 129
AcoI	YGGCCR	3 cut(s)	129, 162, 258
AfaI	GTAC	1 cut(s)	675
AfiI	CCNNNNNNNGG	6 cut(s)	249, 342, 349, 446, 708, 790
AflII	CTTAAG	1 cut(s)	374
AflIII	ACRYGT	1 cut(s)	670
AgsI	TTSAA	1 cut(s)	349
AjnI	CCWGG	2 cut(s)	41, 302
AjuI	GAANNNNNNNTTGG	2 cut(s)	341, 373
AluBI	AGCT	7 cut(s)	268, 364, 373, 539, 683, 689, 831
AluI	AGCT	7 cut(s)	268, 364, 373, 539, 683, 689, 831
Alw21I	GWGCWC	1 cut(s)	580
AlwI	GGATC	3 cut(s)	69, 85, 129
AlwNI	CAGNNNCTG	1 cut(s)	632
Ama87I	CYCGRG	1 cut(s)	504
Aor13HI	TCCGGA	1 cut(s)	533
AoxI	GGCC	5 cut(s)	39, 54, 129, 162, 258
ApaI	GGGCCC	1 cut(s)	58
ApeKI	GCWGC	2 cut(s)	644, 689
ArsI	GACNNNNNNTTYG	2 cut(s)	98, 130
AspLEI	GCGC	2 cut(s)	217, 332
AspS9I	GGNCC	6 cut(s)	39, 54, 55, 208, 437, 746
AsuC2I	CCSGG	1 cut(s)	191
AsuHPI	GGTGA	2 cut(s)	150, 817
AvaI	CYCGRG	1 cut(s)	504
AvaII	GGWCC	3 cut(s)	208, 437, 746
AxyI	CCTNAGG	1 cut(s)	204
BaeGI	GKGCMC	1 cut(s)	58
BalI	TGGCCA	1 cut(s)	131
BanI	GGYRCC	2 cut(s)	233, 515
BanII	GRGCYC	1 cut(s)	58
BauI	CACGAG	1 cut(s)	813
Bbv12I	GWGCWC	1 cut(s)	580
BbvI	GCAGC	2 cut(s)	631, 676
BccI	CCATC	2 cut(s)	551, 718
BceAI	ACGGC	2 cut(s)	53, 503
BcgI	CGANNNNNNTGC	2 cut(s)	468, 502
BciT130I	CCWGG	2 cut(s)	43, 304
BclI	TGATCA	1 cut(s)	661
BcnI	CCSGG	1 cut(s)	191
BfmI	CTRYAG	1 cut(s)	684
BfoI	RGCGCY	1 cut(s)	333
BfrI	CTTAAG	1 cut(s)	374
BglI	GCCNNNNNGGC	1 cut(s)	281
BisI	GCNGC	6 cut(s)	86, 273, 324, 645, 690, 693
BlsI	GCNGC	6 cut(s)	87, 274, 325, 646, 691, 694
Bme1390I	CCNGG	3 cut(s)	43, 191, 304
Bme18I	GGWCC	3 cut(s)	208, 437, 746
BmeT110I	CYCGRG	1 cut(s)	504
BmgT120I	GGNCC	6 cut(s)	39, 54, 55, 208, 437, 746
BmiI	GGNNCC	5 cut(s)	56, 235, 438, 439, 517
BmrFI	CCNGG	3 cut(s)	43, 191, 304
BmrI	ACTGGG	1 cut(s)	73
BmsI	GCATC	3 cut(s)	108, 164, 466
BmuI	ACTGGG	1 cut(s)	73
BpuMI	CCSGG	1 cut(s)	191
BsaJI	CCNNGG	3 cut(s)	302, 303, 784
BsaWI	WCCGGW	4 cut(s)	293, 335, 342, 533
Bsc4I	CCNNNNNNNGG	6 cut(s)	249, 342, 349, 446, 708, 790
Bse118I	RCCGGY	4 cut(s)	149, 160, 256, 326
Bse1I	ACTGG	5 cut(s)	79, 254, 285, 681, 795
Bse21I	CCTNAGG	1 cut(s)	204
Bse3DI	GCAATG	1 cut(s)	639
BseAI	TCCGGA	1 cut(s)	533
BseBI	CCWGG	2 cut(s)	43, 304
BseDI	CCNNGG	3 cut(s)	302, 303, 784
BseGI	GGATG	1 cut(s)	799
BseLI	CCNNNNNNNGG	6 cut(s)	249, 342, 349, 446, 708, 790
BseMI	GCAATG	1 cut(s)	639
BseMII	CTCAG	1 cut(s)	218
BseNI	ACTGG	5 cut(s)	79, 254, 285, 681, 795
BseSI	GKGCMC	1 cut(s)	58
BseXI	GCAGC	2 cut(s)	631, 676
Bsh1236I	CGCG	1 cut(s)	215
BshFI	GGCC	5 cut(s)	41, 56, 131, 164, 260
BshNI	GGYRCC	2 cut(s)	233, 515
BsiHKAI	GWGCWC	1 cut(s)	580
BsiHKCI	CYCGRG	1 cut(s)	504
BslFI	GGGAC	1 cut(s)	450
BslI	CCNNNNNNNGG	6 cut(s)	249, 342, 349, 446, 708, 790
BsmFI	GGGAC	1 cut(s)	450
BsnI	GGCC	5 cut(s)	41, 56, 131, 164, 260
BsoBI	CYCGRG	1 cut(s)	504
Bsp120I	GGGCCC	1 cut(s)	54
Bsp1286I	GDGCHC	2 cut(s)	58, 580
Bsp13I	TCCGGA	1 cut(s)	533
Bsp143I	GATC	4 cut(s)	74, 90, 121, 661
BspANI	GGCC	5 cut(s)	41, 56, 131, 164, 260
BspCNI	CTCAG	1 cut(s)	217
BspEI	TCCGGA	1 cut(s)	533
BspFNI	CGCG	1 cut(s)	215
BspHI	TCATGA	1 cut(s)	836
BspLI	GGNNCC	5 cut(s)	56, 235, 438, 439, 517
BspPI	GGATC	3 cut(s)	69, 85, 129
BspT107I	GGYRCC	2 cut(s)	233, 515
BspTI	CTTAAG	1 cut(s)	374
BsrDI	GCAATG	1 cut(s)	639
BsrFI	RCCGGY	4 cut(s)	149, 160, 256, 326
BsrI	ACTGG	5 cut(s)	79, 254, 285, 681, 795
BssAI	RCCGGY	4 cut(s)	149, 160, 256, 326
BssECI	CCNNGG	3 cut(s)	302, 303, 784
BssMI	GATC	4 cut(s)	74, 90, 121, 661
BssSI	CACGAG	1 cut(s)	813
Bst2BI	CACGAG	1 cut(s)	813
Bst2UI	CCWGG	2 cut(s)	43, 304
Bst4CI	ACNGT	2 cut(s)	385, 458
BstAFI	CTTAAG	1 cut(s)	374
BstC8I	GCNNGC	5 cut(s)	258, 270, 286, 328, 511
BstDEI	CTNAG	2 cut(s)	204, 444
BstDSI	CCRYGG	1 cut(s)	784
BstF5I	GGATG	1 cut(s)	799
BstFNI	CGCG	1 cut(s)	215
BstH2I	RGCGCY	1 cut(s)	333
BstHHI	GCGC	2 cut(s)	217, 332
BstKTI	GATC	4 cut(s)	77, 93, 124, 664
BstMBI	GATC	4 cut(s)	74, 90, 121, 661
BstMWI	GCNNNNNNNGC	9 cut(s)	161, 281, 329, 370, 515, 524, 641, 653, 689
BstNI	CCWGG	2 cut(s)	43, 304
BstNSI	RCATGY	1 cut(s)	674
BstSCI	CCNGG	3 cut(s)	41, 189, 302
BstSFI	CTRYAG	1 cut(s)	684
BstSLI	GKGCMC	1 cut(s)	58
BstUI	CGCG	1 cut(s)	215
BstV1I	GCAGC	2 cut(s)	631, 676
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
Bsu36I	CCTNAGG	1 cut(s)	204
BsuRI	GGCC	5 cut(s)	41, 56, 131, 164, 260
BtgI	CCRYGG	1 cut(s)	784
BtsCI	GGATG	1 cut(s)	799
BtsI	GCAGTG	2 cut(s)	486, 630
BtsIMutI	CAGTG	2 cut(s)	486, 630
Cac8I	GCNNGC	5 cut(s)	258, 270, 286, 328, 511
CaiI	CAGNNNCTG	1 cut(s)	632
CciI	TCATGA	1 cut(s)	836
CfoI	GCGC	2 cut(s)	217, 332
Cfr10I	RCCGGY	4 cut(s)	149, 160, 256, 326
Cfr13I	GGNCC	6 cut(s)	39, 54, 55, 208, 437, 746
CseI	GACGC	1 cut(s)	390
Csp6I	GTAC	1 cut(s)	674
CviAII	CATG	6 cut(s)	127, 166, 262, 595, 671, 837
CviQI	GTAC	1 cut(s)	674
DdeI	CTNAG	2 cut(s)	204, 444
DpnI	GATC	4 cut(s)	76, 92, 123, 663
DpnII	GATC	4 cut(s)	74, 90, 121, 661
EaeI	YGGCCR	3 cut(s)	129, 162, 258
EciI	GGCGGA	3 cut(s)	55, 136, 232
Eco24I	GRGCYC	1 cut(s)	58
Eco47I	GGWCC	3 cut(s)	208, 437, 746
Eco81I	CCTNAGG	1 cut(s)	204
Eco88I	CYCGRG	1 cut(s)	504
EcoO109I	RGGNCCY	2 cut(s)	55, 437
EcoRII	CCWGG	2 cut(s)	41, 302
EcoT22I	ATGCAT	1 cut(s)	101
EcoT38I	GRGCYC	1 cut(s)	58
FaeI	CATG	6 cut(s)	130, 169, 265, 598, 674, 840
FaiI	YATR	8 cut(s)	128, 167, 263, 389, 582, 596, 672, 838
FaqI	GGGAC	1 cut(s)	450
FatI	CATG	6 cut(s)	126, 165, 261, 594, 670, 836
FauI	CCCGC	1 cut(s)	709
FbaI	TGATCA	1 cut(s)	661
FblI	GTMKAC	1 cut(s)	453
Fnu4HI	GCNGC	6 cut(s)	86, 273, 324, 645, 690, 693
FokI	GGATG	1 cut(s)	806
FriOI	GRGCYC	1 cut(s)	58
Fsp4HI	GCNGC	6 cut(s)	86, 273, 324, 645, 690, 693
GlaI	GCGC	2 cut(s)	216, 331
GluI	GCNGC	6 cut(s)	86, 273, 324, 645, 690, 693
HaeII	RGCGCY	1 cut(s)	333
HaeIII	GGCC	5 cut(s)	41, 56, 131, 164, 260
HgaI	GACGC	1 cut(s)	390
HhaI	GCGC	2 cut(s)	217, 332
Hin1II	CATG	6 cut(s)	130, 169, 265, 598, 674, 840
Hin6I	GCGC	2 cut(s)	215, 330
HinP1I	GCGC	2 cut(s)	215, 330
HinfI	GANTC	3 cut(s)	485, 763, 776
HphI	GGTGA	2 cut(s)	150, 817
Hpy166II	GTNNAC	4 cut(s)	211, 454, 471, 544
Hpy188I	TCNGA	2 cut(s)	74, 406
Hpy188III	TCNNGA	3 cut(s)	311, 534, 837
Hpy8I	GTNNAC	4 cut(s)	211, 454, 471, 544
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	1 cut(s)	343
HpyCH4III	ACNGT	2 cut(s)	385, 458
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	4 cut(s)	99, 155, 479, 527
HpyF10VI	GCNNNNNNNGC	9 cut(s)	161, 281, 329, 370, 515, 524, 641, 653, 689
HpyF3I	CTNAG	2 cut(s)	204, 444
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	6 cut(s)	130, 169, 265, 598, 674, 840
HspAI	GCGC	2 cut(s)	215, 330
KflI	GGGWCCC	1 cut(s)	437
Kpn2I	TCCGGA	1 cut(s)	533
KroI	GCCGGC	2 cut(s)	256, 326
KroNI	GCCGGC	2 cut(s)	258, 328
Ksp22I	TGATCA	1 cut(s)	661
Kzo9I	GATC	4 cut(s)	74, 90, 121, 661
LmnI	GCTCC	4 cut(s)	174, 361, 370, 536
Lsp1109I	GCAGC	2 cut(s)	631, 676
LweI	GCATC	3 cut(s)	108, 164, 466
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	2 cut(s)	550, 628
MalI	GATC	4 cut(s)	76, 92, 123, 663
MboI	GATC	4 cut(s)	74, 90, 121, 661
MboII	GAAGA	2 cut(s)	29, 194
MflI	RGATCY	1 cut(s)	121
MhlI	GDGCHC	2 cut(s)	58, 580
MlsI	TGGCCA	1 cut(s)	131
MluNI	TGGCCA	1 cut(s)	131
Mox20I	TGGCCA	1 cut(s)	131
Mph1103I	ATGCAT	1 cut(s)	101
MreI	CGCCGGCG	1 cut(s)	326
MroI	TCCGGA	1 cut(s)	533
MroNI	GCCGGC	2 cut(s)	256, 326
MscI	TGGCCA	1 cut(s)	131
MseI	TTAA	2 cut(s)	375, 819
Msp20I	TGGCCA	1 cut(s)	131
MspA1I	CMGCKG	3 cut(s)	88, 513, 689
MspCI	CTTAAG	1 cut(s)	374
MspR9I	CCNGG	3 cut(s)	43, 191, 304
MvaI	CCWGG	2 cut(s)	43, 304
MvnI	CGCG	1 cut(s)	215
MwoI	GCNNNNNNNGC	9 cut(s)	161, 281, 329, 370, 515, 524, 641, 653, 689
NaeI	GCCGGC	2 cut(s)	258, 328
NciI	CCSGG	1 cut(s)	191
NdeII	GATC	4 cut(s)	74, 90, 121, 661
NgoMIV	GCCGGC	2 cut(s)	256, 326
NlaIII	CATG	6 cut(s)	130, 169, 265, 598, 674, 840
NlaIV	GGNNCC	5 cut(s)	56, 235, 438, 439, 517
NmuCI	GTSAC	2 cut(s)	550, 628
NsiI	ATGCAT	1 cut(s)	101
NspI	RCATGY	1 cut(s)	674
PaeR7I	CTCGAG	1 cut(s)	504
PagI	TCATGA	1 cut(s)	836
PasI	CCCWGGG	1 cut(s)	303
PciI	ACATGT	1 cut(s)	670
PdiI	GCCGGC	2 cut(s)	258, 328
PfeI	GAWTC	3 cut(s)	485, 763, 776
PflFI	GACNNNGTC	2 cut(s)	317, 548
PflMI	CCANNNNNTGG	1 cut(s)	790
PfoI	TCCNGGA	1 cut(s)	189
PkrI	GCNGC	6 cut(s)	87, 274, 325, 646, 691, 694
PpuMI	RGGWCCY	1 cut(s)	437
PscI	ACATGT	1 cut(s)	670
Psp5II	RGGWCCY	1 cut(s)	437
Psp6I	CCWGG	2 cut(s)	41, 302
PspGI	CCWGG	2 cut(s)	41, 302
PspN4I	GGNNCC	5 cut(s)	56, 235, 438, 439, 517
PspOMI	GGGCCC	1 cut(s)	54
PspPI	GGNCC	6 cut(s)	39, 54, 55, 208, 437, 746
PspPPI	RGGWCCY	1 cut(s)	437
PspXI	VCTCGAGB	1 cut(s)	504
PstNI	CAGNNNCTG	1 cut(s)	632
PsuI	RGATCY	1 cut(s)	121
PsyI	GACNNNGTC	2 cut(s)	317, 548
PvuII	CAGCTG	1 cut(s)	689
RsaI	GTAC	1 cut(s)	675
RsaNI	GTAC	1 cut(s)	674
SaqAI	TTAA	2 cut(s)	375, 819
SatI	GCNGC	6 cut(s)	86, 273, 324, 645, 690, 693
Sau3AI	GATC	4 cut(s)	74, 90, 121, 661
Sau96I	GGNCC	6 cut(s)	39, 54, 55, 208, 437, 746
ScrFI	CCNGG	3 cut(s)	43, 191, 304
SduI	GDGCHC	2 cut(s)	58, 580
SfaNI	GCATC	3 cut(s)	108, 164, 466
SfcI	CTRYAG	1 cut(s)	684
Sfr274I	CTCGAG	1 cut(s)	504
SgrAI	CRCCGGYG	2 cut(s)	149, 326
SinI	GGWCC	3 cut(s)	208, 437, 746
SlaI	CTCGAG	1 cut(s)	504
SmlI	CTYRAG	2 cut(s)	374, 504
SmoI	CTYRAG	2 cut(s)	374, 504
StyD4I	CCNGG	3 cut(s)	41, 189, 302
TaaI	ACNGT	2 cut(s)	385, 458
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	3 cut(s)	180, 312, 505
TatI	WGTACW	1 cut(s)	673
TauI	GCSGC	4 cut(s)	88, 275, 326, 695
TfiI	GAWTC	3 cut(s)	485, 763, 776
Tru1I	TTAA	2 cut(s)	375, 819
Tru9I	TTAA	2 cut(s)	375, 819
TscAI	CASTG	2 cut(s)	486, 637
TseFI	GTSAC	2 cut(s)	550, 628
TseI	GCWGC	2 cut(s)	644, 689
Tsp45I	GTSAC	2 cut(s)	550, 628
TspDTI	ATGAA	2 cut(s)	278, 810
TspGWI	ACGGA	1 cut(s)	801
TspRI	CASTG	2 cut(s)	486, 637
Tth111I	GACNNNGTC	2 cut(s)	317, 548
Van91I	CCANNNNNTGG	1 cut(s)	790
Vha464I	CTTAAG	1 cut(s)	374
VpaK11BI	GGWCC	3 cut(s)	208, 437, 746
XceI	RCATGY	1 cut(s)	674
XcmI	CCANNNNNNNNNTGG	2 cut(s)	430, 478
XhoI	CTCGAG	1 cut(s)	504
XmiI	GTMKAC	1 cut(s)	453
Zsp2I	ATGCAT	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.