AT3G24140

transcription factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
8715118 .. 8718211
3094 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G24140.1

Sequence Viewer

Length: 1245 bp
ATGGATAAAGATTACTCGGCACCAAACTTCTTAGGTGAATCCTCAGGCGGTAACGATGATAACAGCTCTGGTATGATAGACTATATGTTCAATAGAAACCTTCAACAACAACAAAAGCAATCGATGCCACAACAGCAGCAACATCAACTCTCTCCTTCCGGATTTGGAGCAACACCTTTTGATAAAATGAACTTCTCTGATGTGATGCAGTTTGCGGACTTCGGTTCGAAACTTGCGTTGAACCAGACCAGAAACCAAGACGATCAAGAAACCGGGATTGACCCCGTTTATTTCTTGAAGTTCCCTGTCTTGAACGACAAAATAGAGGACCATAACCAAACCCAACATCTCATGCCTTCTCATCAGACGTCTCAAGAAGGAGGTGAGTGTGGAGGAAACATAGGCAATGTGTTTCTTGAAGAAAAAGAAGATCAAGACGATGACAACGACAACAACTCCGTGCAACTACGTTTTATTGGAGGAGAAGAAGAAGATAGGGAGAACAAGAATGTTACGAAAAAGGAGGTGAAGAGCAAGAGGAAGAGAGCTAGAACGAGCAAGACCAGCGAAGAAGTGGAAAGCCAACGGATGACTCATATCGCGGTCGAAAGAAACCGTAGGAAGCAAATGAATGAGCATCTTCGTGTCCTTAGATCTCTCATGCCTGGCTCCTACGTTCAAAGGGGAGACCAAGCGTCAATCATAGGAGGAGCAATAGAGTTTGTGAGAGAGCTCGAGCAACTCCTACAATGTCTTGAATCACAGAAGCGTCGAAGAATCTTAGGAGAAACCGGTAGGGACATGACAACGACAACGACTTCTTCTTCTTCTCCCATAACTACGGTAGCGAACCAAGCACAACCGCTCATTATTACGGGAAATGTAACCGAGCTAGAGGGCGGAGGAGGGCTTCGGGAGGAGACTGCGGAGAACAAGTCGTGCTTGGCTGACGTGGAGGTGAAGCTGCTAGGGTTTGACGCCATGATCAAGATACTTTCAAGAAGAAGGCCGGGACAGCTGATTAAGACTATAGCTGCTTTGGAGGATCTTCATCTCTCTATTCTTCACACTAACATCACTACCATGGAACAAACCGTCCTCTACTCCTTTAATGTCAAGATAACAAGTGAAACGAGGTTTACGGCAGAAGACATAGCAAGTTCCATCCAACAGATATTTAGTTTCATTCATGCAAATACCAACATATCTGGAAGCTCTAACCTGGGAAATATTGTGTTTACTTGA

Protein Analysis

414

Amino Acids

46.41

Weight (kDa)

5.29

Isoelectric Point (pI)

64.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 195 - 246 1.7e-11 Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant PF22754 317 - 393 1.6e-06 Plant bHLH transcription factor, ACT-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0011314)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 371
AccB1I GGYRCC 1 cut(s) 19
AccBSI CCGCTC 1 cut(s) 865
AccII CGCG 1 cut(s) 602
AccIII TCCGGA 1 cut(s) 158
AciI CCGC 6 cut(s) 48, 215, 602, 863, 900, 926
AclWI GGATC 1 cut(s) 1053
AcyI GRCGYC 2 cut(s) 368, 978
AgeI ACCGGT 1 cut(s) 791
AgsI TTSAA 9 cut(s) 91, 104, 241, 298, 313, 419, 680, 758, 999
AhdI GACNNNNNGTC 1 cut(s) 694
AjiI CACGTC 1 cut(s) 952
AjnI CCWGG 2 cut(s) 664, 1221
AloI GAACNNNNNNTCC 2 cut(s) 1080, 1112
AluBI AGCT 8 cut(s) 66, 548, 733, 892, 964, 1018, 1034, 1215
AluI AGCT 8 cut(s) 66, 548, 733, 892, 964, 1018, 1034, 1215
Alw21I GWGCWC 1 cut(s) 735
Alw26I GTCTC 3 cut(s) 375, 681, 914
AlwI GGATC 1 cut(s) 1053
Ama87I CYCGRG 1 cut(s) 734
Aor13HI TCCGGA 1 cut(s) 158
AoxI GGCC 1 cut(s) 1007
ApeKI GCWGC 3 cut(s) 136, 964, 1034
AsiGI ACCGGT 1 cut(s) 791
AspS9I GGNCC 1 cut(s) 328
AsuC2I CCSGG 2 cut(s) 274, 1011
AsuHPI GGTGA 4 cut(s) 47, 395, 538, 970
AsuII TTCGAA 1 cut(s) 227
AvaI CYCGRG 1 cut(s) 734
AvaII GGWCC 1 cut(s) 328
AxyI CCTNAGG 1 cut(s) 43
BanI GGYRCC 1 cut(s) 19
BanII GRGCYC 1 cut(s) 735
BbsI GAAGAC 1 cut(s) 1155
Bbv12I GWGCWC 1 cut(s) 735
BbvI GCAGC 3 cut(s) 148, 951, 1021
BccI CCATC 1 cut(s) 1172
BceAI ACGGC 1 cut(s) 1158
BciT130I CCWGG 2 cut(s) 666, 1223
BclI TGATCA 1 cut(s) 984
BcnI CCSGG 2 cut(s) 274, 1011
BcoDI GTCTC 3 cut(s) 375, 681, 914
BfaI CTAG 3 cut(s) 549, 893, 968
BfmI CTRYAG 1 cut(s) 1029
BglII AGATCT 1 cut(s) 653
BisI GCNGC 3 cut(s) 137, 965, 1035
BlsI GCNGC 3 cut(s) 138, 966, 1036
Bme1390I CCNGG 4 cut(s) 274, 666, 1011, 1223
Bme18I GGWCC 1 cut(s) 328
BmeRI GACNNNNNGTC 1 cut(s) 694
BmeT110I CYCGRG 1 cut(s) 734
BmgBI CACGTC 1 cut(s) 952
BmgT120I GGNCC 1 cut(s) 328
BmiI GGNNCC 2 cut(s) 21, 670
BmrFI CCNGG 4 cut(s) 274, 666, 1011, 1223
BmsI GCATC 3 cut(s) 114, 195, 646
BpiI GAAGAC 1 cut(s) 1155
Bpu14I TTCGAA 1 cut(s) 227
BpuEI CTTGAG 1 cut(s) 357
BpuMI CCSGG 2 cut(s) 274, 1011
Bsa29I ATCGAT 1 cut(s) 122
BsaBI GATNNNNATC 1 cut(s) 1050
BsaHI GRCGYC 2 cut(s) 368, 978
BsaI GGTCTC 1 cut(s) 681
BsaJI CCNNGG 2 cut(s) 1083, 1222
BsaWI WCCGGW 2 cut(s) 158, 791
BsaXI ACNNNNNCTCC 4 cut(s) 440, 470, 920, 950
Bse118I RCCGGY 1 cut(s) 791
Bse21I CCTNAGG 1 cut(s) 43
Bse3DI GCAATG 1 cut(s) 412
Bse8I GATNNNNATC 1 cut(s) 1050
BseAI TCCGGA 1 cut(s) 158
BseBI CCWGG 2 cut(s) 666, 1223
BseCI ATCGAT 1 cut(s) 122
BseDI CCNNGG 2 cut(s) 1083, 1222
BseGI GGATG 2 cut(s) 594, 1164
BseJI GATNNNNATC 1 cut(s) 1050
BseMI GCAATG 1 cut(s) 412
BseMII CTCAG 1 cut(s) 57
BseRI GAGGAG 4 cut(s) 495, 723, 918, 932
BseXI GCAGC 3 cut(s) 148, 951, 1021
Bsh1236I CGCG 1 cut(s) 602
Bsh1285I CGRYCG 1 cut(s) 606
BshFI GGCC 1 cut(s) 1009
BshNI GGYRCC 1 cut(s) 19
BshTI ACCGGT 1 cut(s) 791
BshVI ATCGAT 1 cut(s) 122
BsiEI CGRYCG 1 cut(s) 606
BsiHKAI GWGCWC 1 cut(s) 735
BsiHKCI CYCGRG 1 cut(s) 734
BsiSI CCGG 4 cut(s) 159, 273, 792, 1010
BslFI GGGAC 2 cut(s) 812, 1026
BsmAI GTCTC 3 cut(s) 375, 681, 914
BsmBI CGTCTC 1 cut(s) 375
BsmFI GGGAC 2 cut(s) 812, 1026
BsnI GGCC 1 cut(s) 1009
Bso31I GGTCTC 1 cut(s) 681
BsoBI CYCGRG 1 cut(s) 734
Bsp119I TTCGAA 1 cut(s) 227
Bsp1286I GDGCHC 1 cut(s) 735
Bsp13I TCCGGA 1 cut(s) 158
Bsp143I GATC 5 cut(s) 262, 430, 653, 984, 1045
Bsp19I CCATGG 1 cut(s) 1083
BspACI CCGC 6 cut(s) 48, 215, 602, 863, 900, 926
BspANI GGCC 1 cut(s) 1009
BspCNI CTCAG 1 cut(s) 56
BspDI ATCGAT 1 cut(s) 122
BspEI TCCGGA 1 cut(s) 158
BspFNI CGCG 1 cut(s) 602
BspLI GGNNCC 2 cut(s) 21, 670
BspPI GGATC 1 cut(s) 1053
BspQI GCTCTTC 1 cut(s) 524
BspT104I TTCGAA 1 cut(s) 227
BspT107I GGYRCC 1 cut(s) 19
BspTNI GGTCTC 1 cut(s) 681
BsrBI CCGCTC 1 cut(s) 865
BsrDI GCAATG 1 cut(s) 412
BsrFI RCCGGY 1 cut(s) 791
BssAI RCCGGY 1 cut(s) 791
BssECI CCNNGG 2 cut(s) 1083, 1222
BssMI GATC 5 cut(s) 262, 430, 653, 984, 1045
BssNI GRCGYC 2 cut(s) 368, 978
BssT1I CCWWGG 1 cut(s) 1083
Bst2UI CCWGG 2 cut(s) 666, 1223
Bst4CI ACNGT 3 cut(s) 617, 844, 1096
Bst6I CTCTTC 2 cut(s) 524, 536
BstACI GRCGYC 2 cut(s) 368, 978
BstAPI GCANNNNNTGC 1 cut(s) 124
BstBI TTCGAA 1 cut(s) 227
BstDEI CTNAG 4 cut(s) 31, 43, 650, 781
BstDSI CCRYGG 1 cut(s) 1083
BstF5I GGATG 2 cut(s) 594, 1164
BstFNI CGCG 1 cut(s) 602
BstKTI GATC 5 cut(s) 265, 433, 656, 987, 1048
BstMAI GTCTC 3 cut(s) 375, 681, 914
BstMBI GATC 5 cut(s) 262, 430, 653, 984, 1045
BstMCI CGRYCG 1 cut(s) 606
BstMWI GCNNNNNNNGC 5 cut(s) 124, 133, 564, 854, 1015
BstNI CCWGG 2 cut(s) 666, 1223
BstSCI CCNGG 4 cut(s) 272, 664, 1009, 1221
BstSFI CTRYAG 1 cut(s) 1029
BstUI CGCG 1 cut(s) 602
BstV1I GCAGC 3 cut(s) 148, 951, 1021
BstV2I GAAGAC 1 cut(s) 1155
BstX2I RGATCY 2 cut(s) 653, 1045
BstYI RGATCY 2 cut(s) 653, 1045
Bsu15I ATCGAT 1 cut(s) 122
Bsu36I CCTNAGG 1 cut(s) 43
BsuRI GGCC 1 cut(s) 1009
BsuTUI ATCGAT 1 cut(s) 122
BtgI CCRYGG 1 cut(s) 1083
BtrI CACGTC 1 cut(s) 952
BtsCI GGATG 2 cut(s) 594, 1164
Cfr10I RCCGGY 1 cut(s) 791
Cfr13I GGNCC 1 cut(s) 328
ClaI ATCGAT 1 cut(s) 122
CseI GACGC 3 cut(s) 684, 758, 986
CspAI ACCGGT 1 cut(s) 791
CviAII CATG 6 cut(s) 352, 661, 802, 982, 1084, 1190
DdeI CTNAG 4 cut(s) 31, 43, 650, 781
DpnI GATC 5 cut(s) 264, 432, 655, 986, 1047
DpnII GATC 5 cut(s) 262, 430, 653, 984, 1045
DriI GACNNNNNGTC 1 cut(s) 694
Eam1104I CTCTTC 2 cut(s) 524, 536
Eam1105I GACNNNNNGTC 1 cut(s) 694
EarI CTCTTC 2 cut(s) 524, 536
EciI GGCGGA 1 cut(s) 915
Ecl136II GAGCTC 1 cut(s) 733
Eco130I CCWWGG 1 cut(s) 1083
Eco24I GRGCYC 1 cut(s) 735
Eco31I GGTCTC 1 cut(s) 681
Eco47I GGWCC 1 cut(s) 328
Eco53kI GAGCTC 1 cut(s) 733
Eco81I CCTNAGG 1 cut(s) 43
Eco88I CYCGRG 1 cut(s) 734
EcoICRI GAGCTC 1 cut(s) 733
EcoRII CCWGG 2 cut(s) 664, 1221
EcoT14I CCWWGG 1 cut(s) 1083
EcoT38I GRGCYC 1 cut(s) 735
ErhI CCWWGG 1 cut(s) 1083
Esp3I CGTCTC 1 cut(s) 375
FaeI CATG 6 cut(s) 355, 664, 805, 985, 1087, 1193
FalI AAGNNNNNCTT 2 cut(s) 926, 958
FaqI GGGAC 2 cut(s) 812, 1026
FatI CATG 6 cut(s) 351, 660, 801, 981, 1083, 1189
FbaI TGATCA 1 cut(s) 984
Fnu4HI GCNGC 3 cut(s) 137, 965, 1035
FokI GGATG 2 cut(s) 601, 1151
FriOI GRGCYC 1 cut(s) 735
Fsp4HI GCNGC 3 cut(s) 137, 965, 1035
FspBI CTAG 3 cut(s) 549, 893, 968
GluI GCNGC 3 cut(s) 137, 965, 1035
HaeIII GGCC 1 cut(s) 1009
HapII CCGG 4 cut(s) 159, 273, 792, 1010
HgaI GACGC 3 cut(s) 684, 758, 986
Hin1I GRCGYC 2 cut(s) 368, 978
Hin1II CATG 6 cut(s) 355, 664, 805, 985, 1087, 1193
HinfI GANTC 4 cut(s) 38, 592, 758, 777
HpaII CCGG 4 cut(s) 159, 273, 792, 1010
HphI GGTGA 4 cut(s) 47, 395, 538, 970
Hpy166II GTNNAC 2 cut(s) 1140, 1239
Hpy188I TCNGA 2 cut(s) 199, 366
Hpy8I GTNNAC 2 cut(s) 1140, 1239
Hpy99I CGWCG 1 cut(s) 774
HpyAV CCTTC 5 cut(s) 110, 165, 366, 371, 999
HpyCH4III ACNGT 3 cut(s) 617, 844, 1096
HpyCH4IV ACGT 4 cut(s) 368, 469, 675, 951
HpyCH4V TGCA 3 cut(s) 208, 463, 1193
HpyF10VI GCNNNNNNNGC 5 cut(s) 124, 133, 564, 854, 1015
HpyF3I CTNAG 4 cut(s) 31, 43, 650, 781
HpySE526I ACGT 4 cut(s) 368, 469, 675, 951
Hsp92I GRCGYC 2 cut(s) 368, 978
Hsp92II CATG 6 cut(s) 355, 664, 805, 985, 1087, 1193
Kpn2I TCCGGA 1 cut(s) 158
Ksp22I TGATCA 1 cut(s) 984
Kzo9I GATC 5 cut(s) 262, 430, 653, 984, 1045
LguI GCTCTTC 1 cut(s) 524
LmnI GCTCC 3 cut(s) 167, 674, 710
Lsp1109I GCAGC 3 cut(s) 148, 951, 1021
LweI GCATC 3 cut(s) 114, 195, 646
MaeI CTAG 3 cut(s) 549, 893, 968
MaeII ACGT 4 cut(s) 368, 469, 675, 951
MaeIII GTNAC 3 cut(s) 50, 511, 883
MalI GATC 5 cut(s) 264, 432, 655, 986, 1047
MbiI CCGCTC 1 cut(s) 865
MboI GATC 5 cut(s) 262, 430, 653, 984, 1045
MflI RGATCY 2 cut(s) 653, 1045
MhlI GDGCHC 1 cut(s) 735
MlyI GAGTC 1 cut(s) 586
MmeI TCCRAC 1 cut(s) 1192
MroI TCCGGA 1 cut(s) 158
MseI TTAA 2 cut(s) 1023, 1110
MslI CAYNNNNRTG 2 cut(s) 642, 1082
MspA1I CMGCKG 1 cut(s) 1018
MspI CCGG 4 cut(s) 159, 273, 792, 1010
MspR9I CCNGG 4 cut(s) 274, 666, 1011, 1223
MvaI CCWGG 2 cut(s) 666, 1223
MvnI CGCG 1 cut(s) 602
MwoI GCNNNNNNNGC 5 cut(s) 124, 133, 564, 854, 1015
NciI CCSGG 2 cut(s) 274, 1011
NcoI CCATGG 1 cut(s) 1083
NdeII GATC 5 cut(s) 262, 430, 653, 984, 1045
NlaIII CATG 6 cut(s) 355, 664, 805, 985, 1087, 1193
NlaIV GGNNCC 2 cut(s) 21, 670
NspV TTCGAA 1 cut(s) 227
PaeR7I CTCGAG 1 cut(s) 734
PciSI GCTCTTC 1 cut(s) 524
PcsI WCGNNNNNNNCGW 2 cut(s) 233, 444
PfeI GAWTC 3 cut(s) 38, 758, 777
PinAI ACCGGT 1 cut(s) 791
PkrI GCNGC 3 cut(s) 138, 966, 1036
PleI GAGTC 1 cut(s) 586
PpsI GAGTC 1 cut(s) 586
Psp124BI GAGCTC 1 cut(s) 735
Psp6I CCWGG 2 cut(s) 664, 1221
PspGI CCWGG 2 cut(s) 664, 1221
PspN4I GGNNCC 2 cut(s) 21, 670
PspPI GGNCC 1 cut(s) 328
PspXI VCTCGAGB 1 cut(s) 734
PsuI RGATCY 2 cut(s) 653, 1045
PvuII CAGCTG 1 cut(s) 1018
RseI CAYNNNNRTG 2 cut(s) 642, 1082
SacI GAGCTC 1 cut(s) 735
SapI GCTCTTC 1 cut(s) 524
SaqAI TTAA 2 cut(s) 1023, 1110
SatI GCNGC 3 cut(s) 137, 965, 1035
Sau3AI GATC 5 cut(s) 262, 430, 653, 984, 1045
Sau96I GGNCC 1 cut(s) 328
SchI GAGTC 1 cut(s) 586
ScrFI CCNGG 4 cut(s) 274, 666, 1011, 1223
SduI GDGCHC 1 cut(s) 735
SfaNI GCATC 3 cut(s) 114, 195, 646
SfcI CTRYAG 1 cut(s) 1029
Sfr274I CTCGAG 1 cut(s) 734
SfuI TTCGAA 1 cut(s) 227
SinI GGWCC 1 cut(s) 328
SlaI CTCGAG 1 cut(s) 734
SmiMI CAYNNNNRTG 2 cut(s) 642, 1082
SmlI CTYRAG 2 cut(s) 372, 734
SmoI CTYRAG 2 cut(s) 372, 734
SsiI CCGC 6 cut(s) 48, 215, 602, 863, 900, 926
SspI AATATT 1 cut(s) 1231
SspMI CTAG 3 cut(s) 549, 893, 968
SstI GAGCTC 1 cut(s) 735
StyD4I CCNGG 4 cut(s) 272, 664, 1009, 1221
StyI CCWWGG 1 cut(s) 1083
TaaI ACNGT 3 cut(s) 617, 844, 1096
TaiI ACGT 4 cut(s) 371, 472, 678, 954
TaqI TCGA 5 cut(s) 122, 227, 606, 735, 772
TfiI GAWTC 3 cut(s) 38, 758, 777
Tru1I TTAA 2 cut(s) 1023, 1110
Tru9I TTAA 2 cut(s) 1023, 1110
TseI GCWGC 3 cut(s) 136, 964, 1034
TspDTI ATGAA 5 cut(s) 203, 644, 1040, 1174, 1178
TspGWI ACGGA 2 cut(s) 448, 601
VpaK11BI GGWCC 1 cut(s) 328
XcmI CCANNNNNNNNNTGG 1 cut(s) 571
XhoI CTCGAG 1 cut(s) 734
XspI CTAG 3 cut(s) 549, 893, 968
ZraI GACGTC 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.