transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G24140 AT3G24140 |
| fragaria_vesca | FvH4_1g23290 FvH4_4g15850 FvH4_4g15850 |
| malus_domestica | MD04G1006400.v1.1 |
| prunus_persica | Prupe.1G006600_v2.0.a1 Prupe.1G006600_v2.0.a1 Prupe.1G006600_v2.0.a1 |
| pyrus_communis | pycom04g00580 |
| rosa_chinensis | RchiOBHm_Chr4g0415421 |
| rosa_laevigata | RLG00000008071 |
| rosa_multiflora | Rmu_sc0002402.1_g000006 |
| rosa_roxburghii | Rroxscaffold_5G00359180 |
| rosa_rugosa | Rorug04G0134300 |
| rosa_samantha | Rh4AG194600 Rh4BG193300 Rh4CG205600 Rh4DG192300 |
| rosa_wichuraiana | Rw4G016570 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 371 |
| AccB1I | GGYRCC | 1 cut(s) | 19 |
| AccBSI | CCGCTC | 1 cut(s) | 865 |
| AccII | CGCG | 1 cut(s) | 602 |
| AccIII | TCCGGA | 1 cut(s) | 158 |
| AciI | CCGC | 6 cut(s) | 48, 215, 602, 863, 900, 926 |
| AclWI | GGATC | 1 cut(s) | 1053 |
| AcyI | GRCGYC | 2 cut(s) | 368, 978 |
| AgeI | ACCGGT | 1 cut(s) | 791 |
| AgsI | TTSAA | 9 cut(s) | 91, 104, 241, 298, 313, 419, 680, 758, 999 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 694 |
| AjiI | CACGTC | 1 cut(s) | 952 |
| AjnI | CCWGG | 2 cut(s) | 664, 1221 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1080, 1112 |
| AluBI | AGCT | 8 cut(s) | 66, 548, 733, 892, 964, 1018, 1034, 1215 |
| AluI | AGCT | 8 cut(s) | 66, 548, 733, 892, 964, 1018, 1034, 1215 |
| Alw21I | GWGCWC | 1 cut(s) | 735 |
| Alw26I | GTCTC | 3 cut(s) | 375, 681, 914 |
| AlwI | GGATC | 1 cut(s) | 1053 |
| Ama87I | CYCGRG | 1 cut(s) | 734 |
| Aor13HI | TCCGGA | 1 cut(s) | 158 |
| AoxI | GGCC | 1 cut(s) | 1007 |
| ApeKI | GCWGC | 3 cut(s) | 136, 964, 1034 |
| AsiGI | ACCGGT | 1 cut(s) | 791 |
| AspS9I | GGNCC | 1 cut(s) | 328 |
| AsuC2I | CCSGG | 2 cut(s) | 274, 1011 |
| AsuHPI | GGTGA | 4 cut(s) | 47, 395, 538, 970 |
| AsuII | TTCGAA | 1 cut(s) | 227 |
| AvaI | CYCGRG | 1 cut(s) | 734 |
| AvaII | GGWCC | 1 cut(s) | 328 |
| AxyI | CCTNAGG | 1 cut(s) | 43 |
| BanI | GGYRCC | 1 cut(s) | 19 |
| BanII | GRGCYC | 1 cut(s) | 735 |
| BbsI | GAAGAC | 1 cut(s) | 1155 |
| Bbv12I | GWGCWC | 1 cut(s) | 735 |
| BbvI | GCAGC | 3 cut(s) | 148, 951, 1021 |
| BccI | CCATC | 1 cut(s) | 1172 |
| BceAI | ACGGC | 1 cut(s) | 1158 |
| BciT130I | CCWGG | 2 cut(s) | 666, 1223 |
| BclI | TGATCA | 1 cut(s) | 984 |
| BcnI | CCSGG | 2 cut(s) | 274, 1011 |
| BcoDI | GTCTC | 3 cut(s) | 375, 681, 914 |
| BfaI | CTAG | 3 cut(s) | 549, 893, 968 |
| BfmI | CTRYAG | 1 cut(s) | 1029 |
| BglII | AGATCT | 1 cut(s) | 653 |
| BisI | GCNGC | 3 cut(s) | 137, 965, 1035 |
| BlsI | GCNGC | 3 cut(s) | 138, 966, 1036 |
| Bme1390I | CCNGG | 4 cut(s) | 274, 666, 1011, 1223 |
| Bme18I | GGWCC | 1 cut(s) | 328 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 694 |
| BmeT110I | CYCGRG | 1 cut(s) | 734 |
| BmgBI | CACGTC | 1 cut(s) | 952 |
| BmgT120I | GGNCC | 1 cut(s) | 328 |
| BmiI | GGNNCC | 2 cut(s) | 21, 670 |
| BmrFI | CCNGG | 4 cut(s) | 274, 666, 1011, 1223 |
| BmsI | GCATC | 3 cut(s) | 114, 195, 646 |
| BpiI | GAAGAC | 1 cut(s) | 1155 |
| Bpu14I | TTCGAA | 1 cut(s) | 227 |
| BpuEI | CTTGAG | 1 cut(s) | 357 |
| BpuMI | CCSGG | 2 cut(s) | 274, 1011 |
| Bsa29I | ATCGAT | 1 cut(s) | 122 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1050 |
| BsaHI | GRCGYC | 2 cut(s) | 368, 978 |
| BsaI | GGTCTC | 1 cut(s) | 681 |
| BsaJI | CCNNGG | 2 cut(s) | 1083, 1222 |
| BsaWI | WCCGGW | 2 cut(s) | 158, 791 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 440, 470, 920, 950 |
| Bse118I | RCCGGY | 1 cut(s) | 791 |
| Bse21I | CCTNAGG | 1 cut(s) | 43 |
| Bse3DI | GCAATG | 1 cut(s) | 412 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1050 |
| BseAI | TCCGGA | 1 cut(s) | 158 |
| BseBI | CCWGG | 2 cut(s) | 666, 1223 |
| BseCI | ATCGAT | 1 cut(s) | 122 |
| BseDI | CCNNGG | 2 cut(s) | 1083, 1222 |
| BseGI | GGATG | 2 cut(s) | 594, 1164 |
| BseJI | GATNNNNATC | 1 cut(s) | 1050 |
| BseMI | GCAATG | 1 cut(s) | 412 |
| BseMII | CTCAG | 1 cut(s) | 57 |
| BseRI | GAGGAG | 4 cut(s) | 495, 723, 918, 932 |
| BseXI | GCAGC | 3 cut(s) | 148, 951, 1021 |
| Bsh1236I | CGCG | 1 cut(s) | 602 |
| Bsh1285I | CGRYCG | 1 cut(s) | 606 |
| BshFI | GGCC | 1 cut(s) | 1009 |
| BshNI | GGYRCC | 1 cut(s) | 19 |
| BshTI | ACCGGT | 1 cut(s) | 791 |
| BshVI | ATCGAT | 1 cut(s) | 122 |
| BsiEI | CGRYCG | 1 cut(s) | 606 |
| BsiHKAI | GWGCWC | 1 cut(s) | 735 |
| BsiHKCI | CYCGRG | 1 cut(s) | 734 |
| BsiSI | CCGG | 4 cut(s) | 159, 273, 792, 1010 |
| BslFI | GGGAC | 2 cut(s) | 812, 1026 |
| BsmAI | GTCTC | 3 cut(s) | 375, 681, 914 |
| BsmBI | CGTCTC | 1 cut(s) | 375 |
| BsmFI | GGGAC | 2 cut(s) | 812, 1026 |
| BsnI | GGCC | 1 cut(s) | 1009 |
| Bso31I | GGTCTC | 1 cut(s) | 681 |
| BsoBI | CYCGRG | 1 cut(s) | 734 |
| Bsp119I | TTCGAA | 1 cut(s) | 227 |
| Bsp1286I | GDGCHC | 1 cut(s) | 735 |
| Bsp13I | TCCGGA | 1 cut(s) | 158 |
| Bsp143I | GATC | 5 cut(s) | 262, 430, 653, 984, 1045 |
| Bsp19I | CCATGG | 1 cut(s) | 1083 |
| BspACI | CCGC | 6 cut(s) | 48, 215, 602, 863, 900, 926 |
| BspANI | GGCC | 1 cut(s) | 1009 |
| BspCNI | CTCAG | 1 cut(s) | 56 |
| BspDI | ATCGAT | 1 cut(s) | 122 |
| BspEI | TCCGGA | 1 cut(s) | 158 |
| BspFNI | CGCG | 1 cut(s) | 602 |
| BspLI | GGNNCC | 2 cut(s) | 21, 670 |
| BspPI | GGATC | 1 cut(s) | 1053 |
| BspQI | GCTCTTC | 1 cut(s) | 524 |
| BspT104I | TTCGAA | 1 cut(s) | 227 |
| BspT107I | GGYRCC | 1 cut(s) | 19 |
| BspTNI | GGTCTC | 1 cut(s) | 681 |
| BsrBI | CCGCTC | 1 cut(s) | 865 |
| BsrDI | GCAATG | 1 cut(s) | 412 |
| BsrFI | RCCGGY | 1 cut(s) | 791 |
| BssAI | RCCGGY | 1 cut(s) | 791 |
| BssECI | CCNNGG | 2 cut(s) | 1083, 1222 |
| BssMI | GATC | 5 cut(s) | 262, 430, 653, 984, 1045 |
| BssNI | GRCGYC | 2 cut(s) | 368, 978 |
| BssT1I | CCWWGG | 1 cut(s) | 1083 |
| Bst2UI | CCWGG | 2 cut(s) | 666, 1223 |
| Bst4CI | ACNGT | 3 cut(s) | 617, 844, 1096 |
| Bst6I | CTCTTC | 2 cut(s) | 524, 536 |
| BstACI | GRCGYC | 2 cut(s) | 368, 978 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 124 |
| BstBI | TTCGAA | 1 cut(s) | 227 |
| BstDEI | CTNAG | 4 cut(s) | 31, 43, 650, 781 |
| BstDSI | CCRYGG | 1 cut(s) | 1083 |
| BstF5I | GGATG | 2 cut(s) | 594, 1164 |
| BstFNI | CGCG | 1 cut(s) | 602 |
| BstKTI | GATC | 5 cut(s) | 265, 433, 656, 987, 1048 |
| BstMAI | GTCTC | 3 cut(s) | 375, 681, 914 |
| BstMBI | GATC | 5 cut(s) | 262, 430, 653, 984, 1045 |
| BstMCI | CGRYCG | 1 cut(s) | 606 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 124, 133, 564, 854, 1015 |
| BstNI | CCWGG | 2 cut(s) | 666, 1223 |
| BstSCI | CCNGG | 4 cut(s) | 272, 664, 1009, 1221 |
| BstSFI | CTRYAG | 1 cut(s) | 1029 |
| BstUI | CGCG | 1 cut(s) | 602 |
| BstV1I | GCAGC | 3 cut(s) | 148, 951, 1021 |
| BstV2I | GAAGAC | 1 cut(s) | 1155 |
| BstX2I | RGATCY | 2 cut(s) | 653, 1045 |
| BstYI | RGATCY | 2 cut(s) | 653, 1045 |
| Bsu15I | ATCGAT | 1 cut(s) | 122 |
| Bsu36I | CCTNAGG | 1 cut(s) | 43 |
| BsuRI | GGCC | 1 cut(s) | 1009 |
| BsuTUI | ATCGAT | 1 cut(s) | 122 |
| BtgI | CCRYGG | 1 cut(s) | 1083 |
| BtrI | CACGTC | 1 cut(s) | 952 |
| BtsCI | GGATG | 2 cut(s) | 594, 1164 |
| Cfr10I | RCCGGY | 1 cut(s) | 791 |
| Cfr13I | GGNCC | 1 cut(s) | 328 |
| ClaI | ATCGAT | 1 cut(s) | 122 |
| CseI | GACGC | 3 cut(s) | 684, 758, 986 |
| CspAI | ACCGGT | 1 cut(s) | 791 |
| CviAII | CATG | 6 cut(s) | 352, 661, 802, 982, 1084, 1190 |
| DdeI | CTNAG | 4 cut(s) | 31, 43, 650, 781 |
| DpnI | GATC | 5 cut(s) | 264, 432, 655, 986, 1047 |
| DpnII | GATC | 5 cut(s) | 262, 430, 653, 984, 1045 |
| DriI | GACNNNNNGTC | 1 cut(s) | 694 |
| Eam1104I | CTCTTC | 2 cut(s) | 524, 536 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 694 |
| EarI | CTCTTC | 2 cut(s) | 524, 536 |
| EciI | GGCGGA | 1 cut(s) | 915 |
| Ecl136II | GAGCTC | 1 cut(s) | 733 |
| Eco130I | CCWWGG | 1 cut(s) | 1083 |
| Eco24I | GRGCYC | 1 cut(s) | 735 |
| Eco31I | GGTCTC | 1 cut(s) | 681 |
| Eco47I | GGWCC | 1 cut(s) | 328 |
| Eco53kI | GAGCTC | 1 cut(s) | 733 |
| Eco81I | CCTNAGG | 1 cut(s) | 43 |
| Eco88I | CYCGRG | 1 cut(s) | 734 |
| EcoICRI | GAGCTC | 1 cut(s) | 733 |
| EcoRII | CCWGG | 2 cut(s) | 664, 1221 |
| EcoT14I | CCWWGG | 1 cut(s) | 1083 |
| EcoT38I | GRGCYC | 1 cut(s) | 735 |
| ErhI | CCWWGG | 1 cut(s) | 1083 |
| Esp3I | CGTCTC | 1 cut(s) | 375 |
| FaeI | CATG | 6 cut(s) | 355, 664, 805, 985, 1087, 1193 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 926, 958 |
| FaqI | GGGAC | 2 cut(s) | 812, 1026 |
| FatI | CATG | 6 cut(s) | 351, 660, 801, 981, 1083, 1189 |
| FbaI | TGATCA | 1 cut(s) | 984 |
| Fnu4HI | GCNGC | 3 cut(s) | 137, 965, 1035 |
| FokI | GGATG | 2 cut(s) | 601, 1151 |
| FriOI | GRGCYC | 1 cut(s) | 735 |
| Fsp4HI | GCNGC | 3 cut(s) | 137, 965, 1035 |
| FspBI | CTAG | 3 cut(s) | 549, 893, 968 |
| GluI | GCNGC | 3 cut(s) | 137, 965, 1035 |
| HaeIII | GGCC | 1 cut(s) | 1009 |
| HapII | CCGG | 4 cut(s) | 159, 273, 792, 1010 |
| HgaI | GACGC | 3 cut(s) | 684, 758, 986 |
| Hin1I | GRCGYC | 2 cut(s) | 368, 978 |
| Hin1II | CATG | 6 cut(s) | 355, 664, 805, 985, 1087, 1193 |
| HinfI | GANTC | 4 cut(s) | 38, 592, 758, 777 |
| HpaII | CCGG | 4 cut(s) | 159, 273, 792, 1010 |
| HphI | GGTGA | 4 cut(s) | 47, 395, 538, 970 |
| Hpy166II | GTNNAC | 2 cut(s) | 1140, 1239 |
| Hpy188I | TCNGA | 2 cut(s) | 199, 366 |
| Hpy8I | GTNNAC | 2 cut(s) | 1140, 1239 |
| Hpy99I | CGWCG | 1 cut(s) | 774 |
| HpyAV | CCTTC | 5 cut(s) | 110, 165, 366, 371, 999 |
| HpyCH4III | ACNGT | 3 cut(s) | 617, 844, 1096 |
| HpyCH4IV | ACGT | 4 cut(s) | 368, 469, 675, 951 |
| HpyCH4V | TGCA | 3 cut(s) | 208, 463, 1193 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 124, 133, 564, 854, 1015 |
| HpyF3I | CTNAG | 4 cut(s) | 31, 43, 650, 781 |
| HpySE526I | ACGT | 4 cut(s) | 368, 469, 675, 951 |
| Hsp92I | GRCGYC | 2 cut(s) | 368, 978 |
| Hsp92II | CATG | 6 cut(s) | 355, 664, 805, 985, 1087, 1193 |
| Kpn2I | TCCGGA | 1 cut(s) | 158 |
| Ksp22I | TGATCA | 1 cut(s) | 984 |
| Kzo9I | GATC | 5 cut(s) | 262, 430, 653, 984, 1045 |
| LguI | GCTCTTC | 1 cut(s) | 524 |
| LmnI | GCTCC | 3 cut(s) | 167, 674, 710 |
| Lsp1109I | GCAGC | 3 cut(s) | 148, 951, 1021 |
| LweI | GCATC | 3 cut(s) | 114, 195, 646 |
| MaeI | CTAG | 3 cut(s) | 549, 893, 968 |
| MaeII | ACGT | 4 cut(s) | 368, 469, 675, 951 |
| MaeIII | GTNAC | 3 cut(s) | 50, 511, 883 |
| MalI | GATC | 5 cut(s) | 264, 432, 655, 986, 1047 |
| MbiI | CCGCTC | 1 cut(s) | 865 |
| MboI | GATC | 5 cut(s) | 262, 430, 653, 984, 1045 |
| MflI | RGATCY | 2 cut(s) | 653, 1045 |
| MhlI | GDGCHC | 1 cut(s) | 735 |
| MlyI | GAGTC | 1 cut(s) | 586 |
| MmeI | TCCRAC | 1 cut(s) | 1192 |
| MroI | TCCGGA | 1 cut(s) | 158 |
| MseI | TTAA | 2 cut(s) | 1023, 1110 |
| MslI | CAYNNNNRTG | 2 cut(s) | 642, 1082 |
| MspA1I | CMGCKG | 1 cut(s) | 1018 |
| MspI | CCGG | 4 cut(s) | 159, 273, 792, 1010 |
| MspR9I | CCNGG | 4 cut(s) | 274, 666, 1011, 1223 |
| MvaI | CCWGG | 2 cut(s) | 666, 1223 |
| MvnI | CGCG | 1 cut(s) | 602 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 124, 133, 564, 854, 1015 |
| NciI | CCSGG | 2 cut(s) | 274, 1011 |
| NcoI | CCATGG | 1 cut(s) | 1083 |
| NdeII | GATC | 5 cut(s) | 262, 430, 653, 984, 1045 |
| NlaIII | CATG | 6 cut(s) | 355, 664, 805, 985, 1087, 1193 |
| NlaIV | GGNNCC | 2 cut(s) | 21, 670 |
| NspV | TTCGAA | 1 cut(s) | 227 |
| PaeR7I | CTCGAG | 1 cut(s) | 734 |
| PciSI | GCTCTTC | 1 cut(s) | 524 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 233, 444 |
| PfeI | GAWTC | 3 cut(s) | 38, 758, 777 |
| PinAI | ACCGGT | 1 cut(s) | 791 |
| PkrI | GCNGC | 3 cut(s) | 138, 966, 1036 |
| PleI | GAGTC | 1 cut(s) | 586 |
| PpsI | GAGTC | 1 cut(s) | 586 |
| Psp124BI | GAGCTC | 1 cut(s) | 735 |
| Psp6I | CCWGG | 2 cut(s) | 664, 1221 |
| PspGI | CCWGG | 2 cut(s) | 664, 1221 |
| PspN4I | GGNNCC | 2 cut(s) | 21, 670 |
| PspPI | GGNCC | 1 cut(s) | 328 |
| PspXI | VCTCGAGB | 1 cut(s) | 734 |
| PsuI | RGATCY | 2 cut(s) | 653, 1045 |
| PvuII | CAGCTG | 1 cut(s) | 1018 |
| RseI | CAYNNNNRTG | 2 cut(s) | 642, 1082 |
| SacI | GAGCTC | 1 cut(s) | 735 |
| SapI | GCTCTTC | 1 cut(s) | 524 |
| SaqAI | TTAA | 2 cut(s) | 1023, 1110 |
| SatI | GCNGC | 3 cut(s) | 137, 965, 1035 |
| Sau3AI | GATC | 5 cut(s) | 262, 430, 653, 984, 1045 |
| Sau96I | GGNCC | 1 cut(s) | 328 |
| SchI | GAGTC | 1 cut(s) | 586 |
| ScrFI | CCNGG | 4 cut(s) | 274, 666, 1011, 1223 |
| SduI | GDGCHC | 1 cut(s) | 735 |
| SfaNI | GCATC | 3 cut(s) | 114, 195, 646 |
| SfcI | CTRYAG | 1 cut(s) | 1029 |
| Sfr274I | CTCGAG | 1 cut(s) | 734 |
| SfuI | TTCGAA | 1 cut(s) | 227 |
| SinI | GGWCC | 1 cut(s) | 328 |
| SlaI | CTCGAG | 1 cut(s) | 734 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 642, 1082 |
| SmlI | CTYRAG | 2 cut(s) | 372, 734 |
| SmoI | CTYRAG | 2 cut(s) | 372, 734 |
| SsiI | CCGC | 6 cut(s) | 48, 215, 602, 863, 900, 926 |
| SspI | AATATT | 1 cut(s) | 1231 |
| SspMI | CTAG | 3 cut(s) | 549, 893, 968 |
| SstI | GAGCTC | 1 cut(s) | 735 |
| StyD4I | CCNGG | 4 cut(s) | 272, 664, 1009, 1221 |
| StyI | CCWWGG | 1 cut(s) | 1083 |
| TaaI | ACNGT | 3 cut(s) | 617, 844, 1096 |
| TaiI | ACGT | 4 cut(s) | 371, 472, 678, 954 |
| TaqI | TCGA | 5 cut(s) | 122, 227, 606, 735, 772 |
| TfiI | GAWTC | 3 cut(s) | 38, 758, 777 |
| Tru1I | TTAA | 2 cut(s) | 1023, 1110 |
| Tru9I | TTAA | 2 cut(s) | 1023, 1110 |
| TseI | GCWGC | 3 cut(s) | 136, 964, 1034 |
| TspDTI | ATGAA | 5 cut(s) | 203, 644, 1040, 1174, 1178 |
| TspGWI | ACGGA | 2 cut(s) | 448, 601 |
| VpaK11BI | GGWCC | 1 cut(s) | 328 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 571 |
| XhoI | CTCGAG | 1 cut(s) | 734 |
| XspI | CTAG | 3 cut(s) | 549, 893, 968 |
| ZraI | GACGTC | 1 cut(s) | 369 |