RLG00000008071

transcription factor

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
25269669 .. 25271215
1547 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008071

Sequence Viewer

Length: 1356 bp
ATGATCTATGTTTGCTCTACTAATAGTTATGAACTATTGCAGGCTGCTTTCCTGCCAACTAACTTTAACGGTCTGGATTACACCTTAGACCACCATCATGATGAAGATCAGCAGCAGCAGCAGCAGATGAACTCATCCCATGTCGACCAGACTTCTTCGAGTCACGAAAACAACAACAATGGAATGATCAATTACTTGATGAATGATCATCACCATGATCAGCTTCAACTTCAGCATCAACAACCACAGCAGACGCACCATCCTCCTCCGGCAGGATTTAGTGGTGCTTCAACTACTTCTTTTGATAAGCTGAGCTTCGCCGATGTGATGCAGTTCGCCGATTTTGGACCCAAACTAGCCTTAAACCAAACCAAGATCTCAGAAGAAGAATCCGGGATTGACCCGGTTTACTTCCTCAAATTTCCGGTTTTGAACGACAAGTTGGACGACGATGACGATCAGTCTCTGATGGTTCCGCGGCAGGATGGACCAGACAGTCATCAGGAAGAGAGATTTACAAAGTCCGGGGAAGAAGAGGAAACTCGAGGGGTTTCGGGTAGTACTAATTCGGTGCAGCTCCGGTTTCTTGGAGATGATGTTCCAAACCCTAGAGGACTACCGGAGCTGCCAAAGAACAAGAGGAAAAGACCAAGAAGTACTAAGACGAGTCAGGAAGTTGAGAGCCAGAGGATGACTCACATCGCCGTTGAGAGGAACCGAAGGAAGCAAATGAATGAGCATCTTCGAGTACTCAGGTCCCTCATGCCCGGTTCATATGTACAAAGGGGGGATCAAGCTTCTATTATTGGAGGAGCCATAGACTTTGTTAGAGAATTGGAGCAGCTCCTGCAGTGCTTGGAATCACAGAAGCGGAGAAGGCTCTTAGGTGAAGCGCCTCCTCCGAGACAAGTGGGAGCTGACCCTACTGCGGCGGCCAATATGGCGGTACTACCTTCACAGCCAGATCATCAAGGCGGTGGTGGTGTGCCGTTCTTTCCGGCTCCTAATCTGCCTCTTAATCCAAATGATTCAATCAAGTTTGTGGACTTTGAAACGGGGCTCCGCGAAGAAACTGCCGAGATCAAGTCGTGCTTCGCAGATGTTGAAGTGAAGGTTTTAGGGGGTGATGCCATGATCAAGATTCTTTCTCAGAGAAGACCGGGCCAGCTCATTAAGGCCATTGCTGCCCTTGAAGATTTGCAGCTTAAAATTCTTCACACTAACATCACCACCATCGAACAAACTGTTCTATATTGCTTTAAGGTTGCAAGTGAATCGAGGTTCACGGCTGAAGATATAGCAAGTTCGGTTCAGCAGATATTCAGCTTTATCCATGCAAACACCGCCAGCATGTGA

Protein Analysis

452

Amino Acids

50.51

Weight (kDa)

5.39

Isoelectric Point (pI)

54.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 229 - 280 1.9e-11 Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant PF22754 367 - 441 6.5e-08 Plant bHLH transcription factor, ACT-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011314)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 495
AccI GTMKAC 1 cut(s) 144
AccII CGCG 2 cut(s) 478, 1065
AciI CCGC 9 cut(s) 476, 478, 871, 929, 932, 944, 975, 1063, 1344
AclWI GGATC 1 cut(s) 798
AcoI YGGCCR 1 cut(s) 933
AcsI RAATTY 2 cut(s) 419, 1209
AcuI CTGAAG 2 cut(s) 215, 1311
AfaI GTAC 5 cut(s) 562, 658, 750, 780, 948
AfiI CCNNNNNNNGG 3 cut(s) 272, 711, 928
AgsI TTSAA 7 cut(s) 227, 291, 433, 1032, 1052, 1106, 1193
AhdI GACNNNNNGTC 1 cut(s) 460
AjuI GAANNNNNNNTTGG 2 cut(s) 425, 457
AloI GAACNNNNNNTCC 2 cut(s) 582, 614
Alw26I GTCTC 2 cut(s) 468, 898
AlwI GGATC 1 cut(s) 798
AlwNI CAGNNNCTG 2 cut(s) 466, 847
Ama87I CYCGRG 1 cut(s) 543
AoxI GGCC 3 cut(s) 933, 1162, 1176
ApoI RAATTY 2 cut(s) 419, 1209
AspLEI GCGC 1 cut(s) 895
AspS9I GGNCC 4 cut(s) 347, 488, 756, 1162
AsuC2I CCSGG 5 cut(s) 394, 404, 526, 768, 1161
AsuHPI GGTGA 4 cut(s) 203, 899, 1136, 1219
AvaI CYCGRG 1 cut(s) 543
AvaII GGWCC 3 cut(s) 347, 488, 756
BanII GRGCYC 1 cut(s) 1062
BbsI GAAGAC 1 cut(s) 1162
BccI CCATC 5 cut(s) 102, 267, 463, 479, 1241
BceAI ACGGC 3 cut(s) 689, 973, 1302
BcgI CGANNNNNNTGC 4 cut(s) 1055, 1089, 1257, 1291
BclI TGATCA 4 cut(s) 186, 205, 217, 1134
BcnI CCSGG 5 cut(s) 394, 404, 526, 768, 1161
BcoDI GTCTC 2 cut(s) 468, 898
BfaI CTAG 2 cut(s) 356, 609
BfmI CTRYAG 1 cut(s) 848
BfoI RGCGCY 1 cut(s) 896
BglI GCCNNNNNGGC 1 cut(s) 941
BglII AGATCT 1 cut(s) 375
BlpI GCTNAGC 1 cut(s) 311
BmcAI AGTACT 3 cut(s) 562, 658, 750
Bme1390I CCNGG 5 cut(s) 394, 404, 526, 768, 1161
Bme18I GGWCC 3 cut(s) 347, 488, 756
BmeRI GACNNNNNGTC 1 cut(s) 460
BmeT110I CYCGRG 1 cut(s) 543
BmgT120I GGNCC 4 cut(s) 347, 488, 756, 1162
BmiI GGNNCC 7 cut(s) 349, 474, 716, 758, 814, 1002, 1061
BmrFI CCNGG 5 cut(s) 394, 404, 526, 768, 1161
BmsI GCATC 4 cut(s) 244, 318, 748, 1117
BpiI GAAGAC 1 cut(s) 1162
BplI GAGNNNNNCTC 2 cut(s) 679, 711
Bpu1102I GCTNAGC 1 cut(s) 311
BpuMI CCSGG 5 cut(s) 394, 404, 526, 768, 1161
BsaBI GATNNNNATC 2 cut(s) 105, 456
BsaJI CCNNGG 2 cut(s) 476, 525
BsaWI WCCGGW 3 cut(s) 424, 579, 619
BsaXI ACNNNNNCTCC 2 cut(s) 582, 612
Bsc4I CCNNNNNNNGG 3 cut(s) 272, 711, 928
Bse3DI GCAATG 1 cut(s) 1179
Bse8I GATNNNNATC 2 cut(s) 105, 456
BseDI CCNNGG 2 cut(s) 476, 525
BseGI GGATG 4 cut(s) 134, 259, 490, 696
BseJI GATNNNNATC 2 cut(s) 105, 456
BseLI CCNNNNNNNGG 3 cut(s) 272, 711, 928
BseMI GCAATG 1 cut(s) 1179
BseMII CTCAG 4 cut(s) 302, 393, 766, 1163
BseRI GAGGAG 3 cut(s) 255, 825, 888
BsgI GTGCAG 1 cut(s) 593
Bsh1236I CGCG 2 cut(s) 478, 1065
BshFI GGCC 3 cut(s) 935, 1164, 1178
BsiHKCI CYCGRG 1 cut(s) 543
BslFI GGGAC 1 cut(s) 742
BslI CCNNNNNNNGG 3 cut(s) 272, 711, 928
BsmAI GTCTC 2 cut(s) 468, 898
BsmFI GGGAC 1 cut(s) 742
BsnI GGCC 3 cut(s) 935, 1164, 1178
BsoBI CYCGRG 1 cut(s) 543
Bsp1286I GDGCHC 1 cut(s) 1062
Bsp1407I TGTACA 1 cut(s) 778
Bsp1720I GCTNAGC 1 cut(s) 311
BspACI CCGC 9 cut(s) 476, 478, 871, 929, 932, 944, 975, 1063, 1344
BspANI GGCC 3 cut(s) 935, 1164, 1178
BspCNI CTCAG 4 cut(s) 303, 392, 765, 1162
BspFNI CGCG 2 cut(s) 478, 1065
BspHI TCATGA 1 cut(s) 97
BspLI GGNNCC 7 cut(s) 349, 474, 716, 758, 814, 1002, 1061
BspMAI CTGCAG 1 cut(s) 852
BspPI GGATC 1 cut(s) 798
BsrDI GCAATG 1 cut(s) 1179
BsrGI TGTACA 1 cut(s) 778
BssECI CCNNGG 2 cut(s) 476, 525
Bst4CI ACNGT 3 cut(s) 71, 497, 1246
Bst6I CTCTTC 2 cut(s) 501, 528
BstAPI GCANNNNNTGC 1 cut(s) 847
BstAUI TGTACA 1 cut(s) 778
BstC8I GCNNGC 3 cut(s) 42, 1166, 1348
BstDEI CTNAG 7 cut(s) 85, 311, 379, 660, 752, 883, 1149
BstDSI CCRYGG 1 cut(s) 476
BstENI CCTNNNNNAGG 1 cut(s) 270
BstF5I GGATG 4 cut(s) 134, 259, 490, 696
BstFNI CGCG 2 cut(s) 478, 1065
BstH2I RGCGCY 1 cut(s) 896
BstHHI GCGC 1 cut(s) 895
BstMAI GTCTC 2 cut(s) 468, 898
BstMWI GCNNNNNNNGC 7 cut(s) 118, 121, 847, 877, 941, 1184, 1343
BstNSI RCATGY 1 cut(s) 1354
BstSCI CCNGG 5 cut(s) 392, 402, 524, 766, 1159
BstSFI CTRYAG 1 cut(s) 848
BstUI CGCG 2 cut(s) 478, 1065
BstV2I GAAGAC 1 cut(s) 1162
BstX2I RGATCY 1 cut(s) 375
BstYI RGATCY 1 cut(s) 375
BsuRI GGCC 3 cut(s) 935, 1164, 1178
BtgI CCRYGG 1 cut(s) 476
BtgZI GCGATG 1 cut(s) 685
BtsCI GGATG 4 cut(s) 134, 259, 490, 696
BtsI GCAGTG 1 cut(s) 857
BtsIMutI CAGTG 1 cut(s) 857
Cac8I GCNNGC 3 cut(s) 42, 1166, 1348
CaiI CAGNNNCTG 2 cut(s) 466, 847
CciI TCATGA 1 cut(s) 97
CfoI GCGC 1 cut(s) 895
Cfr13I GGNCC 4 cut(s) 347, 488, 756, 1162
Cfr42I CCGCGG 1 cut(s) 479
CseI GACGC 1 cut(s) 262
Csp6I GTAC 5 cut(s) 561, 657, 749, 779, 947
CviAII CATG 7 cut(s) 98, 140, 215, 763, 1132, 1334, 1351
CviQI GTAC 5 cut(s) 561, 657, 749, 779, 947
DdeI CTNAG 7 cut(s) 85, 311, 379, 660, 752, 883, 1149
DrdI GACNNNNNNGTC 1 cut(s) 495
DriI GACNNNNNGTC 1 cut(s) 460
DseDI GACNNNNNNGTC 1 cut(s) 495
EaeI YGGCCR 1 cut(s) 933
Eam1104I CTCTTC 2 cut(s) 501, 528
Eam1105I GACNNNNNGTC 1 cut(s) 460
EarI CTCTTC 2 cut(s) 501, 528
Eco24I GRGCYC 1 cut(s) 1062
Eco47I GGWCC 3 cut(s) 347, 488, 756
Eco57I CTGAAG 2 cut(s) 215, 1311
Eco88I CYCGRG 1 cut(s) 543
EcoNI CCTNNNNNAGG 1 cut(s) 270
EcoO109I RGGNCCY 1 cut(s) 756
EcoT38I GRGCYC 1 cut(s) 1062
FaeI CATG 7 cut(s) 101, 143, 218, 766, 1135, 1337, 1354
FalI AAGNNNNNCTT 4 cut(s) 299, 331, 1076, 1108
FaqI GGGAC 1 cut(s) 742
FatI CATG 7 cut(s) 97, 139, 214, 762, 1131, 1333, 1350
FauNDI CATATG 1 cut(s) 775
FbaI TGATCA 4 cut(s) 186, 205, 217, 1134
FblI GTMKAC 1 cut(s) 144
FokI GGATG 4 cut(s) 121, 246, 497, 703
FriOI GRGCYC 1 cut(s) 1062
FspBI CTAG 2 cut(s) 356, 609
GlaI GCGC 1 cut(s) 894
HaeII RGCGCY 1 cut(s) 896
HaeIII GGCC 3 cut(s) 935, 1164, 1178
HgaI GACGC 1 cut(s) 262
HhaI GCGC 1 cut(s) 895
Hin1II CATG 7 cut(s) 101, 143, 218, 766, 1135, 1337, 1354
Hin6I GCGC 1 cut(s) 893
HinP1I GCGC 1 cut(s) 893
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HindIII AAGCTT 1 cut(s) 795
HinfI GANTC 8 cut(s) 160, 389, 667, 694, 860, 1028, 1141, 1274
HphI GGTGA 4 cut(s) 203, 899, 1136, 1219
Hpy166II GTNNAC 4 cut(s) 145, 409, 1045, 1284
Hpy188I TCNGA 4 cut(s) 382, 468, 903, 1152
Hpy188III TCNNGA 6 cut(s) 74, 98, 164, 503, 671, 1138
Hpy8I GTNNAC 4 cut(s) 145, 409, 1045, 1284
Hpy99I CGWCG 1 cut(s) 452
HpyAV CCTTC 4 cut(s) 714, 870, 963, 1105
HpyCH4III ACNGT 3 cut(s) 71, 497, 1246
HpyCH4V TGCA 7 cut(s) 40, 331, 574, 850, 1201, 1268, 1337
HpyF10VI GCNNNNNNNGC 7 cut(s) 118, 121, 847, 877, 941, 1184, 1343
HpyF3I CTNAG 7 cut(s) 85, 311, 379, 660, 752, 883, 1149
Hsp92II CATG 7 cut(s) 101, 143, 218, 766, 1135, 1337, 1354
HspAI GCGC 1 cut(s) 893
Ksp22I TGATCA 4 cut(s) 186, 205, 217, 1134
KspI CCGCGG 1 cut(s) 479
LmnI GCTCC 8 cut(s) 582, 622, 812, 838, 849, 914, 1006, 1065
LweI GCATC 4 cut(s) 244, 318, 748, 1117
MaeI CTAG 2 cut(s) 356, 609
MaeIII GTNAC 1 cut(s) 161
MflI RGATCY 1 cut(s) 375
MhlI GDGCHC 1 cut(s) 1062
MluCI AATT 5 cut(s) 190, 419, 565, 833, 1209
MlyI GAGTC 3 cut(s) 169, 676, 688
MmeI TCCRAC 1 cut(s) 423
MseI TTAA 6 cut(s) 66, 362, 1017, 1173, 1206, 1260
MslI CAYNNNNRTG 3 cut(s) 96, 99, 213
MspA1I CMGCKG 1 cut(s) 478
MspR9I CCNGG 5 cut(s) 394, 404, 526, 768, 1161
MvnI CGCG 2 cut(s) 478, 1065
MwoI GCNNNNNNNGC 7 cut(s) 118, 121, 847, 877, 941, 1184, 1343
NciI CCSGG 5 cut(s) 394, 404, 526, 768, 1161
NdeI CATATG 1 cut(s) 775
NlaIII CATG 7 cut(s) 101, 143, 218, 766, 1135, 1337, 1354
NlaIV GGNNCC 7 cut(s) 349, 474, 716, 758, 814, 1002, 1061
NmeAIII GCCGAG 1 cut(s) 1102
NmuCI GTSAC 1 cut(s) 161
NspI RCATGY 1 cut(s) 1354
PaeR7I CTCGAG 1 cut(s) 543
PagI TCATGA 1 cut(s) 97
PcsI WCGNNNNNNNCGW 1 cut(s) 453
PfeI GAWTC 5 cut(s) 389, 860, 1028, 1141, 1274
PfoI TCCNGGA 1 cut(s) 392
PleI GAGTC 3 cut(s) 168, 675, 688
PpsI GAGTC 3 cut(s) 168, 675, 688
PpuMI RGGWCCY 1 cut(s) 756
Psp5II RGGWCCY 1 cut(s) 756
PspN4I GGNNCC 7 cut(s) 349, 474, 716, 758, 814, 1002, 1061
PspPI GGNCC 4 cut(s) 347, 488, 756, 1162
PspPPI RGGWCCY 1 cut(s) 756
PspXI VCTCGAGB 1 cut(s) 543
PstI CTGCAG 1 cut(s) 852
PstNI CAGNNNCTG 2 cut(s) 466, 847
PsuI RGATCY 1 cut(s) 375
RsaI GTAC 5 cut(s) 562, 658, 750, 780, 948
RsaNI GTAC 5 cut(s) 561, 657, 749, 779, 947
RseI CAYNNNNRTG 3 cut(s) 96, 99, 213
SacII CCGCGG 1 cut(s) 479
SalI GTCGAC 1 cut(s) 143
SaqAI TTAA 6 cut(s) 66, 362, 1017, 1173, 1206, 1260
Sau96I GGNCC 4 cut(s) 347, 488, 756, 1162
ScaI AGTACT 3 cut(s) 562, 658, 750
SchI GAGTC 3 cut(s) 169, 676, 688
ScrFI CCNGG 5 cut(s) 394, 404, 526, 768, 1161
SduI GDGCHC 1 cut(s) 1062
SfaNI GCATC 4 cut(s) 244, 318, 748, 1117
SfcI CTRYAG 1 cut(s) 848
Sfr274I CTCGAG 1 cut(s) 543
Sfr303I CCGCGG 1 cut(s) 479
SgrBI CCGCGG 1 cut(s) 479
SinI GGWCC 3 cut(s) 347, 488, 756
SlaI CTCGAG 1 cut(s) 543
SmiMI CAYNNNNRTG 3 cut(s) 96, 99, 213
SmlI CTYRAG 1 cut(s) 543
SmoI CTYRAG 1 cut(s) 543
Sse9I AATT 5 cut(s) 190, 419, 565, 833, 1209
SsiI CCGC 9 cut(s) 476, 478, 871, 929, 932, 944, 975, 1063, 1344
SspMI CTAG 2 cut(s) 356, 609
StyD4I CCNGG 5 cut(s) 392, 402, 524, 766, 1159
TaaI ACNGT 3 cut(s) 71, 497, 1246
TaqI TCGA 6 cut(s) 144, 158, 544, 745, 1236, 1277
TasI AATT 5 cut(s) 190, 419, 565, 833, 1209
TatI WGTACW 4 cut(s) 560, 656, 748, 778
TauI GCSGC 3 cut(s) 481, 932, 935
TfiI GAWTC 5 cut(s) 389, 860, 1028, 1141, 1274
Tru1I TTAA 6 cut(s) 66, 362, 1017, 1173, 1206, 1260
Tru9I TTAA 6 cut(s) 66, 362, 1017, 1173, 1206, 1260
TscAI CASTG 1 cut(s) 857
TseFI GTSAC 1 cut(s) 161
Tsp45I GTSAC 1 cut(s) 161
TspDTI ATGAA 6 cut(s) 45, 117, 143, 215, 746, 762
TspRI CASTG 1 cut(s) 857
VpaK11BI GGWCC 3 cut(s) 347, 488, 756
XagI CCTNNNNNAGG 1 cut(s) 270
XapI RAATTY 2 cut(s) 419, 1209
XceI RCATGY 1 cut(s) 1354
XhoI CTCGAG 1 cut(s) 543
XmiI GTMKAC 1 cut(s) 144
XspI CTAG 2 cut(s) 356, 609
ZrmI AGTACT 3 cut(s) 562, 658, 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.