RH4BG193300

transcription factor

Basic Information

Type: Sequence Only
Biological Identity
rosa_samantha
Unknown
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG193300.1

Sequence Viewer

Length: 1356 bp
ATGATCTATGTTTGCTCTACTAATAGTTATGAACTATTGCAGGCTGCTTTCCTGCCAACTAACTTTAACGGTCTGGATTACACCTTAGACCACCATCATGATGAAGATCAGCAGCAGCAGCAGATGAACTCATGCCATGTCGACCAGACTTCTTCGAGTCACGAAAACAACAACAATGGAATGATCAATTACTTGATGAATGATCATCACCATGATCAGCTTCAACTTCAACATCAACAGCCACAACAGACGCAACATCCTCCTCCGGCAGGGTTTAGTGGTGCTTCAACTACTTCTTTTGATAAGCTGAGCTTTGCGGACGTGATGCAGTTTGCCGATTTTGGACCCAAACTAGCCTTAAACCAAACCAAGATCTCAGAAGAAGAATCCGGGATTGACCCGGTTTACTTCCTCAAGTTTCCGGTTTTGAACGACAAGTTGGACGACGATGACGATCAGTCTCTGATGGTTCCGCGGCAGGATGGACCGGACAGTCATCAGGAAGAGAGATTTACAAAGTCCGGGGAAGAAGAGGAAACTCGAGGGGTTTCGGGTAGTACTAATTCGGTGCAGCTCCGGTTTCTTGGAGATGATGTTCCAAACCCTAGAGGAGGACTACCGGAGCTGCCAAAGAACAAGAGGAAAAGACCAAGAAGTACTAAGACGAGTCAGGAAGTTGAGAGCCAGAGGATGACTCACATCGCCGTTGAGAGGAACCGAAGGAAGCAAATGAATGAGCATCTTCGAGTGCTCAGGTCCCTCATGCCCGGTTCATATGTACAAAGGGGGGATCAAGCTTCTATTATTGGAGGAGCCATAGACTTTGTTAGAGAATTGGAGCAGCTCCTGCAGTGCTTGGAATCACAGAAGCGGAGAAGGCTCTTAGGTGAAGCGCCTCCTCCGAGACAAGTGGGAGCTGACCCTACTGCGGCTGCTAATATGGCGGTGCTACCTTCACAGCCAGATCATCAAGGCGGTGGTGGTGTGCCGTTCTTTCCGGCTCCTAATCTGCCTCTTAATCCAAATGATCCAATCAAGTTTGTGGACTTTGAAACGGGGCTCCGCGAAGAAACAGCCGAGATCAAGTCGTGCTTCGCAGATGTTGAAGTGAAGGTTTTAGGGGGTGATGCCATGATCAAGATTCTTTCTCAGAGAAGACCGGGCCAGCTCATTAAGGCCATTGCTGCCCTTGAAGATTTGCAGCTTAAAATTCTTCACACTAACATCACCACCATCGAACAAACTGTTCTATATTGCTTTAAGGTTGCAAGTGATTCGAGGTTCACGGCTGAAGATATAGCAAGTTCGGTTCAGCAGATATTCAGCTTTATCCATGCAAACACCGCCAGCATGTGA

Protein Analysis

451

Amino Acids

50.44

Weight (kDa)

5.33

Isoelectric Point (pI)

54.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 229 - 280 1.9e-11 Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant PF22754 367 - 441 6.3e-08 Plant bHLH transcription factor, ACT-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011314)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 492
AccI GTMKAC 1 cut(s) 141
AccII CGCG 2 cut(s) 475, 1065
AciI CCGC 9 cut(s) 317, 473, 475, 871, 929, 944, 975, 1063, 1344
AclWI GGATC 2 cut(s) 798, 1022
AcsI RAATTY 1 cut(s) 1209
AcuI CTGAAG 1 cut(s) 1311
AfaI GTAC 3 cut(s) 559, 658, 780
AfiI CCNNNNNNNGG 4 cut(s) 269, 611, 711, 928
AgsI TTSAA 7 cut(s) 224, 230, 288, 430, 1052, 1106, 1193
AhdI GACNNNNNGTC 1 cut(s) 457
AjiI CACGTC 1 cut(s) 322
AjuI GAANNNNNNNTTGG 2 cut(s) 422, 454
AloI GAACNNNNNNTCC 2 cut(s) 579, 611
Alw21I GWGCWC 1 cut(s) 753
Alw26I GTCTC 2 cut(s) 465, 898
AlwI GGATC 2 cut(s) 798, 1022
AlwNI CAGNNNCTG 2 cut(s) 463, 847
Ama87I CYCGRG 1 cut(s) 540
AoxI GGCC 2 cut(s) 1162, 1176
ApoI RAATTY 1 cut(s) 1209
AspLEI GCGC 1 cut(s) 895
AspS9I GGNCC 4 cut(s) 344, 485, 756, 1162
AsuC2I CCSGG 5 cut(s) 391, 401, 523, 768, 1161
AsuHPI GGTGA 4 cut(s) 200, 899, 1136, 1219
AvaI CYCGRG 1 cut(s) 540
AvaII GGWCC 3 cut(s) 344, 485, 756
BanII GRGCYC 1 cut(s) 1062
BbsI GAAGAC 1 cut(s) 1162
Bbv12I GWGCWC 1 cut(s) 753
BccI CCATC 4 cut(s) 102, 460, 476, 1241
BceAI ACGGC 3 cut(s) 689, 973, 1302
BcgI CGANNNNNNTGC 2 cut(s) 1257, 1291
BclI TGATCA 4 cut(s) 183, 202, 214, 1134
BcnI CCSGG 5 cut(s) 391, 401, 523, 768, 1161
BcoDI GTCTC 2 cut(s) 465, 898
BfaI CTAG 2 cut(s) 353, 606
BfmI CTRYAG 1 cut(s) 848
BfoI RGCGCY 1 cut(s) 896
BglII AGATCT 1 cut(s) 372
BlpI GCTNAGC 1 cut(s) 308
BmcAI AGTACT 2 cut(s) 559, 658
Bme1390I CCNGG 5 cut(s) 391, 401, 523, 768, 1161
Bme18I GGWCC 3 cut(s) 344, 485, 756
BmeRI GACNNNNNGTC 1 cut(s) 457
BmeT110I CYCGRG 1 cut(s) 540
BmgBI CACGTC 1 cut(s) 322
BmgT120I GGNCC 4 cut(s) 344, 485, 756, 1162
BmiI GGNNCC 7 cut(s) 346, 471, 716, 758, 814, 1002, 1061
BmrFI CCNGG 5 cut(s) 391, 401, 523, 768, 1161
BmsI GCATC 3 cut(s) 315, 748, 1117
BpiI GAAGAC 1 cut(s) 1162
BplI GAGNNNNNCTC 2 cut(s) 679, 711
Bpu10I CCTNAGC 1 cut(s) 752
Bpu1102I GCTNAGC 1 cut(s) 308
BpuEI CTTGAG 1 cut(s) 398
BpuMI CCSGG 5 cut(s) 391, 401, 523, 768, 1161
BsaBI GATNNNNATC 2 cut(s) 105, 453
BsaJI CCNNGG 2 cut(s) 473, 522
BsaWI WCCGGW 4 cut(s) 421, 487, 576, 619
BsaXI ACNNNNNCTCC 2 cut(s) 579, 609
Bsc4I CCNNNNNNNGG 4 cut(s) 269, 611, 711, 928
Bse3DI GCAATG 1 cut(s) 1179
Bse8I GATNNNNATC 2 cut(s) 105, 453
BseDI CCNNGG 2 cut(s) 473, 522
BseGI GGATG 3 cut(s) 256, 487, 696
BseJI GATNNNNATC 2 cut(s) 105, 453
BseLI CCNNNNNNNGG 4 cut(s) 269, 611, 711, 928
BseMI GCAATG 1 cut(s) 1179
BseMII CTCAG 4 cut(s) 299, 390, 766, 1163
BseRI GAGGAG 4 cut(s) 252, 624, 825, 888
BsgI GTGCAG 1 cut(s) 590
Bsh1236I CGCG 2 cut(s) 475, 1065
BshFI GGCC 2 cut(s) 1164, 1178
BsiHKAI GWGCWC 1 cut(s) 753
BsiHKCI CYCGRG 1 cut(s) 540
BslFI GGGAC 1 cut(s) 742
BslI CCNNNNNNNGG 4 cut(s) 269, 611, 711, 928
BsmAI GTCTC 2 cut(s) 465, 898
BsmFI GGGAC 1 cut(s) 742
BsnI GGCC 2 cut(s) 1164, 1178
BsoBI CYCGRG 1 cut(s) 540
Bsp1286I GDGCHC 2 cut(s) 753, 1062
Bsp1407I TGTACA 1 cut(s) 778
Bsp1720I GCTNAGC 1 cut(s) 308
BspACI CCGC 9 cut(s) 317, 473, 475, 871, 929, 944, 975, 1063, 1344
BspANI GGCC 2 cut(s) 1164, 1178
BspCNI CTCAG 4 cut(s) 300, 389, 765, 1162
BspFNI CGCG 2 cut(s) 475, 1065
BspHI TCATGA 1 cut(s) 97
BspLI GGNNCC 7 cut(s) 346, 471, 716, 758, 814, 1002, 1061
BspMAI CTGCAG 1 cut(s) 852
BspPI GGATC 2 cut(s) 798, 1022
BsrDI GCAATG 1 cut(s) 1179
BsrGI TGTACA 1 cut(s) 778
BssECI CCNNGG 2 cut(s) 473, 522
Bst4CI ACNGT 3 cut(s) 71, 494, 1246
Bst6I CTCTTC 2 cut(s) 498, 525
BstAPI GCANNNNNTGC 1 cut(s) 847
BstAUI TGTACA 1 cut(s) 778
BstC8I GCNNGC 3 cut(s) 42, 1166, 1348
BstDEI CTNAG 7 cut(s) 85, 308, 376, 660, 752, 883, 1149
BstDSI CCRYGG 1 cut(s) 473
BstENI CCTNNNNNAGG 2 cut(s) 267, 609
BstF5I GGATG 3 cut(s) 256, 487, 696
BstFNI CGCG 2 cut(s) 475, 1065
BstH2I RGCGCY 1 cut(s) 896
BstHHI GCGC 1 cut(s) 895
BstMAI GTCTC 2 cut(s) 465, 898
BstMWI GCNNNNNNNGC 6 cut(s) 118, 847, 877, 941, 1184, 1343
BstNSI RCATGY 1 cut(s) 1354
BstSCI CCNGG 5 cut(s) 389, 399, 521, 766, 1159
BstSFI CTRYAG 1 cut(s) 848
BstUI CGCG 2 cut(s) 475, 1065
BstV2I GAAGAC 1 cut(s) 1162
BstX2I RGATCY 1 cut(s) 372
BstYI RGATCY 1 cut(s) 372
BsuRI GGCC 2 cut(s) 1164, 1178
BtgI CCRYGG 1 cut(s) 473
BtgZI GCGATG 1 cut(s) 685
BtrI CACGTC 1 cut(s) 322
BtsCI GGATG 3 cut(s) 256, 487, 696
BtsI GCAGTG 1 cut(s) 857
BtsIMutI CAGTG 1 cut(s) 857
Cac8I GCNNGC 3 cut(s) 42, 1166, 1348
CaiI CAGNNNCTG 2 cut(s) 463, 847
CciI TCATGA 1 cut(s) 97
CfoI GCGC 1 cut(s) 895
Cfr13I GGNCC 4 cut(s) 344, 485, 756, 1162
Cfr42I CCGCGG 1 cut(s) 476
CseI GACGC 1 cut(s) 259
Csp6I GTAC 3 cut(s) 558, 657, 779
CviAII CATG 8 cut(s) 98, 132, 137, 212, 763, 1132, 1334, 1351
CviQI GTAC 3 cut(s) 558, 657, 779
DdeI CTNAG 7 cut(s) 85, 308, 376, 660, 752, 883, 1149
DrdI GACNNNNNNGTC 1 cut(s) 492
DriI GACNNNNNGTC 1 cut(s) 457
DseDI GACNNNNNNGTC 1 cut(s) 492
Eam1104I CTCTTC 2 cut(s) 498, 525
Eam1105I GACNNNNNGTC 1 cut(s) 457
EarI CTCTTC 2 cut(s) 498, 525
Eco24I GRGCYC 1 cut(s) 1062
Eco47I GGWCC 3 cut(s) 344, 485, 756
Eco57I CTGAAG 1 cut(s) 1311
Eco88I CYCGRG 1 cut(s) 540
EcoNI CCTNNNNNAGG 2 cut(s) 267, 609
EcoO109I RGGNCCY 1 cut(s) 756
EcoT38I GRGCYC 1 cut(s) 1062
FaeI CATG 8 cut(s) 101, 135, 140, 215, 766, 1135, 1337, 1354
FalI AAGNNNNNCTT 4 cut(s) 296, 328, 1076, 1108
FaqI GGGAC 1 cut(s) 742
FatI CATG 8 cut(s) 97, 131, 136, 211, 762, 1131, 1333, 1350
FauNDI CATATG 1 cut(s) 775
FbaI TGATCA 4 cut(s) 183, 202, 214, 1134
FblI GTMKAC 1 cut(s) 141
FokI GGATG 3 cut(s) 243, 494, 703
FriOI GRGCYC 1 cut(s) 1062
FspBI CTAG 2 cut(s) 353, 606
GlaI GCGC 1 cut(s) 894
HaeII RGCGCY 1 cut(s) 896
HaeIII GGCC 2 cut(s) 1164, 1178
HgaI GACGC 1 cut(s) 259
HhaI GCGC 1 cut(s) 895
Hin1II CATG 8 cut(s) 101, 135, 140, 215, 766, 1135, 1337, 1354
Hin6I GCGC 1 cut(s) 893
HinP1I GCGC 1 cut(s) 893
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HindIII AAGCTT 1 cut(s) 795
HinfI GANTC 7 cut(s) 157, 386, 667, 694, 860, 1141, 1274
HphI GGTGA 4 cut(s) 200, 899, 1136, 1219
Hpy166II GTNNAC 4 cut(s) 142, 406, 1045, 1284
Hpy188I TCNGA 4 cut(s) 379, 465, 903, 1152
Hpy188III TCNNGA 6 cut(s) 74, 98, 161, 500, 671, 1138
Hpy8I GTNNAC 4 cut(s) 142, 406, 1045, 1284
Hpy99I CGWCG 1 cut(s) 449
HpyAV CCTTC 4 cut(s) 714, 870, 963, 1105
HpyCH4III ACNGT 3 cut(s) 71, 494, 1246
HpyCH4IV ACGT 1 cut(s) 321
HpyCH4V TGCA 7 cut(s) 40, 328, 571, 850, 1201, 1268, 1337
HpyF10VI GCNNNNNNNGC 6 cut(s) 118, 847, 877, 941, 1184, 1343
HpyF3I CTNAG 7 cut(s) 85, 308, 376, 660, 752, 883, 1149
HpySE526I ACGT 1 cut(s) 321
Hsp92II CATG 8 cut(s) 101, 135, 140, 215, 766, 1135, 1337, 1354
HspAI GCGC 1 cut(s) 893
Ksp22I TGATCA 4 cut(s) 183, 202, 214, 1134
KspI CCGCGG 1 cut(s) 476
LmnI GCTCC 8 cut(s) 579, 622, 812, 838, 849, 914, 1006, 1065
LweI GCATC 3 cut(s) 315, 748, 1117
MaeI CTAG 2 cut(s) 353, 606
MaeII ACGT 1 cut(s) 321
MaeIII GTNAC 1 cut(s) 158
MflI RGATCY 1 cut(s) 372
MhlI GDGCHC 2 cut(s) 753, 1062
MluCI AATT 4 cut(s) 187, 562, 833, 1209
MlyI GAGTC 3 cut(s) 166, 676, 688
MmeI TCCRAC 1 cut(s) 420
MseI TTAA 6 cut(s) 66, 359, 1017, 1173, 1206, 1260
MslI CAYNNNNRTG 3 cut(s) 96, 99, 210
MspA1I CMGCKG 1 cut(s) 475
MspR9I CCNGG 5 cut(s) 391, 401, 523, 768, 1161
MvnI CGCG 2 cut(s) 475, 1065
MwoI GCNNNNNNNGC 6 cut(s) 118, 847, 877, 941, 1184, 1343
NciI CCSGG 5 cut(s) 391, 401, 523, 768, 1161
NdeI CATATG 1 cut(s) 775
NlaIII CATG 8 cut(s) 101, 135, 140, 215, 766, 1135, 1337, 1354
NlaIV GGNNCC 7 cut(s) 346, 471, 716, 758, 814, 1002, 1061
NmeAIII GCCGAG 1 cut(s) 1102
NmuCI GTSAC 1 cut(s) 158
NspI RCATGY 1 cut(s) 1354
PaeR7I CTCGAG 1 cut(s) 540
PagI TCATGA 1 cut(s) 97
PcsI WCGNNNNNNNCGW 1 cut(s) 450
PfeI GAWTC 4 cut(s) 386, 860, 1141, 1274
PfoI TCCNGGA 1 cut(s) 389
PleI GAGTC 3 cut(s) 165, 675, 688
PpsI GAGTC 3 cut(s) 165, 675, 688
PpuMI RGGWCCY 1 cut(s) 756
Psp5II RGGWCCY 1 cut(s) 756
PspN4I GGNNCC 7 cut(s) 346, 471, 716, 758, 814, 1002, 1061
PspPI GGNCC 4 cut(s) 344, 485, 756, 1162
PspPPI RGGWCCY 1 cut(s) 756
PspXI VCTCGAGB 1 cut(s) 540
PstI CTGCAG 1 cut(s) 852
PstNI CAGNNNCTG 2 cut(s) 463, 847
PsuI RGATCY 1 cut(s) 372
RsaI GTAC 3 cut(s) 559, 658, 780
RsaNI GTAC 3 cut(s) 558, 657, 779
RseI CAYNNNNRTG 3 cut(s) 96, 99, 210
SacII CCGCGG 1 cut(s) 476
SalI GTCGAC 1 cut(s) 140
SaqAI TTAA 6 cut(s) 66, 359, 1017, 1173, 1206, 1260
Sau96I GGNCC 4 cut(s) 344, 485, 756, 1162
ScaI AGTACT 2 cut(s) 559, 658
SchI GAGTC 3 cut(s) 166, 676, 688
ScrFI CCNGG 5 cut(s) 391, 401, 523, 768, 1161
SduI GDGCHC 2 cut(s) 753, 1062
SfaNI GCATC 3 cut(s) 315, 748, 1117
SfcI CTRYAG 1 cut(s) 848
Sfr274I CTCGAG 1 cut(s) 540
Sfr303I CCGCGG 1 cut(s) 476
SgrBI CCGCGG 1 cut(s) 476
SinI GGWCC 3 cut(s) 344, 485, 756
SlaI CTCGAG 1 cut(s) 540
SmiMI CAYNNNNRTG 3 cut(s) 96, 99, 210
SmlI CTYRAG 2 cut(s) 413, 540
SmoI CTYRAG 2 cut(s) 413, 540
Sse9I AATT 4 cut(s) 187, 562, 833, 1209
SsiI CCGC 9 cut(s) 317, 473, 475, 871, 929, 944, 975, 1063, 1344
SspMI CTAG 2 cut(s) 353, 606
StyD4I CCNGG 5 cut(s) 389, 399, 521, 766, 1159
TaaI ACNGT 3 cut(s) 71, 494, 1246
TaiI ACGT 1 cut(s) 324
TaqI TCGA 6 cut(s) 141, 155, 541, 745, 1236, 1277
TasI AATT 4 cut(s) 187, 562, 833, 1209
TatI WGTACW 3 cut(s) 557, 656, 778
TauI GCSGC 2 cut(s) 478, 932
TfiI GAWTC 4 cut(s) 386, 860, 1141, 1274
Tru1I TTAA 6 cut(s) 66, 359, 1017, 1173, 1206, 1260
Tru9I TTAA 6 cut(s) 66, 359, 1017, 1173, 1206, 1260
TscAI CASTG 1 cut(s) 857
TseFI GTSAC 1 cut(s) 158
Tsp45I GTSAC 1 cut(s) 158
TspDTI ATGAA 6 cut(s) 45, 117, 140, 212, 746, 762
TspRI CASTG 1 cut(s) 857
VpaK11BI GGWCC 3 cut(s) 344, 485, 756
XagI CCTNNNNNAGG 2 cut(s) 267, 609
XapI RAATTY 1 cut(s) 1209
XceI RCATGY 1 cut(s) 1354
XhoI CTCGAG 1 cut(s) 540
XmiI GTMKAC 1 cut(s) 141
XspI CTAG 2 cut(s) 353, 606
ZrmI AGTACT 2 cut(s) 559, 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.