transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G24140 AT3G24140 |
| fragaria_vesca | FvH4_1g23290 FvH4_4g15850 FvH4_4g15850 |
| malus_domestica | MD04G1006400.v1.1 |
| prunus_persica | Prupe.1G006600_v2.0.a1 Prupe.1G006600_v2.0.a1 Prupe.1G006600_v2.0.a1 |
| pyrus_communis | pycom04g00580 |
| rosa_chinensis | RchiOBHm_Chr4g0415421 |
| rosa_laevigata | RLG00000008071 |
| rosa_multiflora | Rmu_sc0002402.1_g000006 |
| rosa_roxburghii | Rroxscaffold_5G00359180 |
| rosa_rugosa | Rorug04G0134300 |
| rosa_samantha | Rh4AG194600 Rh4BG193300 Rh4CG205600 Rh4DG192300 |
| rosa_wichuraiana | Rw4G016570 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 483 |
| AccB1I | GGYRCC | 1 cut(s) | 994 |
| AccI | GTMKAC | 1 cut(s) | 123 |
| AclWI | GGATC | 3 cut(s) | 453, 792, 1016 |
| AcuI | CTGAAG | 1 cut(s) | 1305 |
| AfaI | GTAC | 4 cut(s) | 280, 550, 652, 774 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 257, 605, 705 |
| AflII | CTTAAG | 1 cut(s) | 401 |
| AjiI | CACGTC | 1 cut(s) | 310 |
| AjnI | CCWGG | 1 cut(s) | 1153 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 573, 605 |
| Alw26I | GTCTC | 2 cut(s) | 62, 456 |
| AlwI | GGATC | 3 cut(s) | 453, 792, 1016 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 103, 454, 841 |
| Ama87I | CYCGRG | 1 cut(s) | 531 |
| AoxI | GGCC | 2 cut(s) | 641, 1170 |
| AspLEI | GCGC | 1 cut(s) | 889 |
| AspS9I | GGNCC | 2 cut(s) | 332, 476 |
| AsuC2I | CCSGG | 3 cut(s) | 379, 389, 762 |
| AsuHPI | GGTGA | 4 cut(s) | 182, 527, 1130, 1213 |
| AvaI | CYCGRG | 1 cut(s) | 531 |
| AvaII | GGWCC | 2 cut(s) | 332, 476 |
| BanI | GGYRCC | 1 cut(s) | 994 |
| BanII | GRGCYC | 1 cut(s) | 1056 |
| BbsI | GAAGAC | 2 cut(s) | 375, 1156 |
| BccI | CCATC | 3 cut(s) | 87, 451, 467 |
| BceAI | ACGGC | 2 cut(s) | 683, 1296 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1251, 1285 |
| BciT130I | CCWGG | 1 cut(s) | 1155 |
| BclI | TGATCA | 3 cut(s) | 85, 184, 1128 |
| BcnI | CCSGG | 3 cut(s) | 379, 389, 762 |
| BcoDI | GTCTC | 2 cut(s) | 62, 456 |
| BfaI | CTAG | 2 cut(s) | 341, 600 |
| BfmI | CTRYAG | 2 cut(s) | 810, 842 |
| BfoI | RGCGCY | 1 cut(s) | 890 |
| BfrI | CTTAAG | 1 cut(s) | 401 |
| BlpI | GCTNAGC | 1 cut(s) | 296 |
| BmcAI | AGTACT | 3 cut(s) | 280, 550, 652 |
| Bme1390I | CCNGG | 4 cut(s) | 379, 389, 762, 1155 |
| Bme18I | GGWCC | 2 cut(s) | 332, 476 |
| BmeT110I | CYCGRG | 1 cut(s) | 531 |
| BmgBI | CACGTC | 1 cut(s) | 310 |
| BmgT120I | GGNCC | 2 cut(s) | 332, 476 |
| BmiI | GGNNCC | 6 cut(s) | 334, 462, 618, 710, 996, 1055 |
| BmrFI | CCNGG | 4 cut(s) | 379, 389, 762, 1155 |
| BmsI | GCATC | 3 cut(s) | 303, 742, 1111 |
| BoxI | GACNNNNGTC | 1 cut(s) | 486 |
| BpiI | GAAGAC | 2 cut(s) | 375, 1156 |
| BpmI | CTGGAG | 1 cut(s) | 635 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 296 |
| BpuMI | CCSGG | 3 cut(s) | 379, 389, 762 |
| BsaBI | GATNNNNATC | 2 cut(s) | 90, 444 |
| BsaI | GGTCTC | 1 cut(s) | 62 |
| BsaWI | WCCGGW | 3 cut(s) | 512, 570, 991 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 573, 603 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 257, 605, 705 |
| Bse1I | ACTGG | 1 cut(s) | 618 |
| Bse3DI | GCAATG | 1 cut(s) | 1173 |
| Bse8I | GATNNNNATC | 2 cut(s) | 90, 444 |
| BseBI | CCWGG | 1 cut(s) | 1155 |
| BseGI | GGATG | 4 cut(s) | 113, 244, 478, 690 |
| BseJI | GATNNNNATC | 2 cut(s) | 90, 444 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 257, 605, 705 |
| BseMI | GCAATG | 1 cut(s) | 1173 |
| BseMII | CTCAG | 3 cut(s) | 287, 760, 1157 |
| BseNI | ACTGG | 1 cut(s) | 618 |
| BseRI | GAGGAG | 4 cut(s) | 240, 618, 819, 882 |
| BsgI | GTGCAG | 1 cut(s) | 584 |
| BshFI | GGCC | 2 cut(s) | 643, 1172 |
| BshNI | GGYRCC | 1 cut(s) | 994 |
| BsiHKCI | CYCGRG | 1 cut(s) | 531 |
| BsiSI | CCGG | 7 cut(s) | 254, 378, 389, 513, 571, 762, 992 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 257, 605, 705 |
| BsmAI | GTCTC | 2 cut(s) | 62, 456 |
| BsnI | GGCC | 2 cut(s) | 643, 1172 |
| Bso31I | GGTCTC | 1 cut(s) | 62 |
| BsoBI | CYCGRG | 1 cut(s) | 531 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1056 |
| Bsp1407I | TGTACA | 1 cut(s) | 772 |
| Bsp143I | GATC | 9 cut(s) | 85, 91, 184, 196, 445, 784, 958, 1021, 1128 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 296 |
| BspANI | GGCC | 2 cut(s) | 643, 1172 |
| BspCNI | CTCAG | 3 cut(s) | 288, 759, 1156 |
| BspHI | TCATGA | 1 cut(s) | 82 |
| BspLI | GGNNCC | 6 cut(s) | 334, 462, 618, 710, 996, 1055 |
| BspMAI | CTGCAG | 1 cut(s) | 846 |
| BspPI | GGATC | 3 cut(s) | 453, 792, 1016 |
| BspT107I | GGYRCC | 1 cut(s) | 994 |
| BspTI | CTTAAG | 1 cut(s) | 401 |
| BspTNI | GGTCTC | 1 cut(s) | 62 |
| BsrDI | GCAATG | 1 cut(s) | 1173 |
| BsrGI | TGTACA | 1 cut(s) | 772 |
| BsrI | ACTGG | 1 cut(s) | 618 |
| BssMI | GATC | 9 cut(s) | 85, 91, 184, 196, 445, 784, 958, 1021, 1128 |
| Bst2UI | CCWGG | 1 cut(s) | 1155 |
| Bst4CI | ACNGT | 3 cut(s) | 56, 485, 1240 |
| Bst6I | CTCTTC | 3 cut(s) | 6, 489, 516 |
| BstAFI | CTTAAG | 1 cut(s) | 401 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 841, 1083 |
| BstAUI | TGTACA | 1 cut(s) | 772 |
| BstC8I | GCNNGC | 3 cut(s) | 680, 980, 1342 |
| BstDEI | CTNAG | 7 cut(s) | 70, 296, 624, 654, 746, 877, 1143 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 255, 603 |
| BstF5I | GGATG | 4 cut(s) | 113, 244, 478, 690 |
| BstH2I | RGCGCY | 1 cut(s) | 890 |
| BstHHI | GCGC | 1 cut(s) | 889 |
| BstKTI | GATC | 9 cut(s) | 88, 94, 187, 199, 448, 787, 961, 1024, 1131 |
| BstMAI | GTCTC | 2 cut(s) | 62, 456 |
| BstMBI | GATC | 9 cut(s) | 85, 91, 184, 196, 445, 784, 958, 1021, 1128 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 841, 871, 917, 926, 935, 1003, 1083, 1178, 1337 |
| BstNI | CCWGG | 1 cut(s) | 1155 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 486 |
| BstSCI | CCNGG | 4 cut(s) | 377, 387, 760, 1153 |
| BstSFI | CTRYAG | 2 cut(s) | 810, 842 |
| BstV2I | GAAGAC | 2 cut(s) | 375, 1156 |
| BsuRI | GGCC | 2 cut(s) | 643, 1172 |
| BtrI | CACGTC | 1 cut(s) | 310 |
| BtsCI | GGATG | 4 cut(s) | 113, 244, 478, 690 |
| BtsI | GCAGTG | 1 cut(s) | 851 |
| BtsIMutI | CAGTG | 1 cut(s) | 851 |
| Cac8I | GCNNGC | 3 cut(s) | 680, 980, 1342 |
| CaiI | CAGNNNCTG | 3 cut(s) | 103, 454, 841 |
| CciI | TCATGA | 1 cut(s) | 82 |
| CfoI | GCGC | 1 cut(s) | 889 |
| Cfr13I | GGNCC | 2 cut(s) | 332, 476 |
| CseI | GACGC | 2 cut(s) | 247, 1333 |
| Csp6I | GTAC | 4 cut(s) | 279, 549, 651, 773 |
| CviAII | CATG | 7 cut(s) | 83, 119, 194, 757, 1126, 1328, 1348 |
| CviQI | GTAC | 4 cut(s) | 279, 549, 651, 773 |
| DdeI | CTNAG | 7 cut(s) | 70, 296, 624, 654, 746, 877, 1143 |
| DpnI | GATC | 9 cut(s) | 87, 93, 186, 198, 447, 786, 960, 1023, 1130 |
| DpnII | GATC | 9 cut(s) | 85, 91, 184, 196, 445, 784, 958, 1021, 1128 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 483 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 483 |
| Eam1104I | CTCTTC | 3 cut(s) | 6, 489, 516 |
| EarI | CTCTTC | 3 cut(s) | 6, 489, 516 |
| Eco24I | GRGCYC | 1 cut(s) | 1056 |
| Eco31I | GGTCTC | 1 cut(s) | 62 |
| Eco47I | GGWCC | 2 cut(s) | 332, 476 |
| Eco57I | CTGAAG | 1 cut(s) | 1305 |
| Eco88I | CYCGRG | 1 cut(s) | 531 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 255, 603 |
| EcoRII | CCWGG | 1 cut(s) | 1153 |
| EcoT38I | GRGCYC | 1 cut(s) | 1056 |
| FaeI | CATG | 7 cut(s) | 86, 122, 197, 760, 1129, 1331, 1351 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 284, 316, 1070, 1102 |
| FatI | CATG | 7 cut(s) | 82, 118, 193, 756, 1125, 1327, 1347 |
| FbaI | TGATCA | 3 cut(s) | 85, 184, 1128 |
| FblI | GTMKAC | 1 cut(s) | 123 |
| FokI | GGATG | 4 cut(s) | 100, 231, 485, 697 |
| FriOI | GRGCYC | 1 cut(s) | 1056 |
| FspBI | CTAG | 2 cut(s) | 341, 600 |
| GlaI | GCGC | 1 cut(s) | 888 |
| GsuI | CTGGAG | 1 cut(s) | 635 |
| HaeII | RGCGCY | 1 cut(s) | 890 |
| HaeIII | GGCC | 2 cut(s) | 643, 1172 |
| HapII | CCGG | 7 cut(s) | 254, 378, 389, 513, 571, 762, 992 |
| HgaI | GACGC | 2 cut(s) | 247, 1333 |
| HhaI | GCGC | 1 cut(s) | 889 |
| Hin1II | CATG | 7 cut(s) | 86, 122, 197, 760, 1129, 1331, 1351 |
| Hin6I | GCGC | 1 cut(s) | 887 |
| HinP1I | GCGC | 1 cut(s) | 887 |
| HincII | GTYRAC | 1 cut(s) | 124 |
| HindII | GTYRAC | 1 cut(s) | 124 |
| HindIII | AAGCTT | 2 cut(s) | 46, 789 |
| HpaII | CCGG | 7 cut(s) | 254, 378, 389, 513, 571, 762, 992 |
| HphI | GGTGA | 4 cut(s) | 182, 527, 1130, 1213 |
| Hpy166II | GTNNAC | 4 cut(s) | 124, 394, 1039, 1278 |
| Hpy188I | TCNGA | 5 cut(s) | 367, 456, 1011, 1058, 1146 |
| Hpy188III | TCNNGA | 7 cut(s) | 59, 83, 89, 143, 491, 665, 1132 |
| Hpy8I | GTNNAC | 4 cut(s) | 124, 394, 1039, 1278 |
| Hpy99I | CGWCG | 2 cut(s) | 311, 440 |
| HpyAV | CCTTC | 4 cut(s) | 708, 864, 957, 1099 |
| HpyCH4III | ACNGT | 3 cut(s) | 56, 485, 1240 |
| HpyCH4IV | ACGT | 1 cut(s) | 309 |
| HpyCH4V | TGCA | 7 cut(s) | 316, 565, 844, 1195, 1262, 1295, 1331 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 841, 871, 917, 926, 935, 1003, 1083, 1178, 1337 |
| HpyF3I | CTNAG | 7 cut(s) | 70, 296, 624, 654, 746, 877, 1143 |
| HpySE526I | ACGT | 1 cut(s) | 309 |
| Hsp92II | CATG | 7 cut(s) | 86, 122, 197, 760, 1129, 1331, 1351 |
| HspAI | GCGC | 1 cut(s) | 887 |
| Ksp22I | TGATCA | 3 cut(s) | 85, 184, 1128 |
| Kzo9I | GATC | 9 cut(s) | 85, 91, 184, 196, 445, 784, 958, 1021, 1128 |
| LmnI | GCTCC | 7 cut(s) | 573, 616, 806, 832, 843, 908, 1059 |
| LweI | GCATC | 3 cut(s) | 303, 742, 1111 |
| MaeI | CTAG | 2 cut(s) | 341, 600 |
| MaeII | ACGT | 1 cut(s) | 309 |
| MaeIII | GTNAC | 2 cut(s) | 140, 750 |
| MalI | GATC | 9 cut(s) | 87, 93, 186, 198, 447, 786, 960, 1023, 1130 |
| MboI | GATC | 9 cut(s) | 85, 91, 184, 196, 445, 784, 958, 1021, 1128 |
| MhlI | GDGCHC | 1 cut(s) | 1056 |
| MluCI | AATT | 3 cut(s) | 169, 556, 798 |
| MlyI | GAGTC | 3 cut(s) | 148, 670, 682 |
| MmeI | TCCRAC | 1 cut(s) | 810 |
| MseI | TTAA | 5 cut(s) | 51, 347, 402, 1167, 1254 |
| MslI | CAYNNNNRTG | 2 cut(s) | 81, 192 |
| MspA1I | CMGCKG | 4 cut(s) | 103, 682, 920, 1198 |
| MspCI | CTTAAG | 1 cut(s) | 401 |
| MspI | CCGG | 7 cut(s) | 254, 378, 389, 513, 571, 762, 992 |
| MspR9I | CCNGG | 4 cut(s) | 379, 389, 762, 1155 |
| MvaI | CCWGG | 1 cut(s) | 1155 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 841, 871, 917, 926, 935, 1003, 1083, 1178, 1337 |
| NciI | CCSGG | 3 cut(s) | 379, 389, 762 |
| NdeII | GATC | 9 cut(s) | 85, 91, 184, 196, 445, 784, 958, 1021, 1128 |
| NlaIII | CATG | 7 cut(s) | 86, 122, 197, 760, 1129, 1331, 1351 |
| NlaIV | GGNNCC | 6 cut(s) | 334, 462, 618, 710, 996, 1055 |
| NmeAIII | GCCGAG | 2 cut(s) | 5, 1096 |
| NmuCI | GTSAC | 2 cut(s) | 140, 750 |
| PaeR7I | CTCGAG | 1 cut(s) | 531 |
| PagI | TCATGA | 1 cut(s) | 82 |
| PfeI | GAWTC | 7 cut(s) | 374, 854, 914, 1012, 1135, 1204, 1268 |
| PfoI | TCCNGGA | 1 cut(s) | 377 |
| PleI | GAGTC | 3 cut(s) | 147, 669, 682 |
| PpsI | GAGTC | 3 cut(s) | 147, 669, 682 |
| PshAI | GACNNNNGTC | 1 cut(s) | 486 |
| Psp6I | CCWGG | 1 cut(s) | 1153 |
| PspGI | CCWGG | 1 cut(s) | 1153 |
| PspN4I | GGNNCC | 6 cut(s) | 334, 462, 618, 710, 996, 1055 |
| PspPI | GGNCC | 2 cut(s) | 332, 476 |
| PspXI | VCTCGAGB | 1 cut(s) | 531 |
| PstI | CTGCAG | 1 cut(s) | 846 |
| PstNI | CAGNNNCTG | 3 cut(s) | 103, 454, 841 |
| PvuII | CAGCTG | 2 cut(s) | 103, 1198 |
| RsaI | GTAC | 4 cut(s) | 280, 550, 652, 774 |
| RsaNI | GTAC | 4 cut(s) | 279, 549, 651, 773 |
| RseI | CAYNNNNRTG | 2 cut(s) | 81, 192 |
| SalI | GTCGAC | 1 cut(s) | 122 |
| SaqAI | TTAA | 5 cut(s) | 51, 347, 402, 1167, 1254 |
| Sau3AI | GATC | 9 cut(s) | 85, 91, 184, 196, 445, 784, 958, 1021, 1128 |
| Sau96I | GGNCC | 2 cut(s) | 332, 476 |
| ScaI | AGTACT | 3 cut(s) | 280, 550, 652 |
| SchI | GAGTC | 3 cut(s) | 148, 670, 682 |
| ScrFI | CCNGG | 4 cut(s) | 379, 389, 762, 1155 |
| SduI | GDGCHC | 1 cut(s) | 1056 |
| SfaNI | GCATC | 3 cut(s) | 303, 742, 1111 |
| SfcI | CTRYAG | 2 cut(s) | 810, 842 |
| Sfr274I | CTCGAG | 1 cut(s) | 531 |
| SinI | GGWCC | 2 cut(s) | 332, 476 |
| SlaI | CTCGAG | 1 cut(s) | 531 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 81, 192 |
| SmlI | CTYRAG | 2 cut(s) | 401, 531 |
| SmoI | CTYRAG | 2 cut(s) | 401, 531 |
| Sse9I | AATT | 3 cut(s) | 169, 556, 798 |
| SspMI | CTAG | 2 cut(s) | 341, 600 |
| StyD4I | CCNGG | 4 cut(s) | 377, 387, 760, 1153 |
| TaaI | ACNGT | 3 cut(s) | 56, 485, 1240 |
| TaiI | ACGT | 1 cut(s) | 312 |
| TaqI | TCGA | 7 cut(s) | 60, 123, 137, 532, 739, 1230, 1271 |
| TasI | AATT | 3 cut(s) | 169, 556, 798 |
| TatI | WGTACW | 4 cut(s) | 278, 548, 650, 772 |
| TauI | GCSGC | 3 cut(s) | 622, 926, 929 |
| TfiI | GAWTC | 7 cut(s) | 374, 854, 914, 1012, 1135, 1204, 1268 |
| Tru1I | TTAA | 5 cut(s) | 51, 347, 402, 1167, 1254 |
| Tru9I | TTAA | 5 cut(s) | 51, 347, 402, 1167, 1254 |
| TscAI | CASTG | 1 cut(s) | 851 |
| TseFI | GTSAC | 2 cut(s) | 140, 750 |
| Tsp45I | GTSAC | 2 cut(s) | 140, 750 |
| TspDTI | ATGAA | 2 cut(s) | 122, 740 |
| TspRI | CASTG | 1 cut(s) | 851 |
| Vha464I | CTTAAG | 1 cut(s) | 401 |
| VpaK11BI | GGWCC | 2 cut(s) | 332, 476 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 255, 603 |
| XhoI | CTCGAG | 1 cut(s) | 531 |
| XmiI | GTMKAC | 1 cut(s) | 123 |
| XspI | CTAG | 2 cut(s) | 341, 600 |
| ZrmI | AGTACT | 3 cut(s) | 280, 550, 652 |