FvH4_4g15850

transcription factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
19775458 .. 19777692
2235 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g15850.t2

Sequence Viewer

Length: 1353 bp
ATGGAGAAGGAAGAGAACAACTACTCGGCTGCTTTCCTGCCACCAAGCTTTAACGGTCTCGATTACACCTTAGACCACCATCATGATCAAGATCAGCAGCAGCTGATGAACTCATCCCATGTCGACCAGACTTGTTCGAGTCACGAAAACAACAACAATGGAATGGTCAATTACTTGCTGAATGATCATCACCATGATCGGCTTCAACTTCAACATCAACATCAACAACCACAGCAGACGCAACATCCTCCTCCGGCAGGATTTGGTGGTGCTTCAAGTACTTCGTTTGATAAGCTGAGCTTTGCCGACGTGATGCAGTTTGCGGATTTTGGACCCAAACTAGCCTTAAACCAAACAAAGATTTCAGAAGACGAATCCGGGATTGACCCGGTTTACTTCCTTAAGTTTCCTGTTTTGAACGACAATAAGTTAGACGACGATGAGGATCAGTCTCTGATGGTTCCGCAGCAGGATGGACCAGACAGTCGTCAGGAAGAGAGATTTACAAAGTCCGGTGAAGAAGAGGAAACTCGAGGGGTTTCGGGTAGTACTAATAATTCGGTGCAGCTCCGGTTTCTTGGAGATGATGTTCAAAACCCTAGAGGAGGACTACTGGAGCCGCCTAAGAACAAGAGGAAAAGGCCAAGAAGTACTAAGACGAGTCAGGAAGTTGAAAGCCAGCGGATGACTCATATCGCCGTTGAGAGGAACCGAAGGAAGCAAATGAATGAGCATCTTCGAGTTCTCAGGTCACTCATGCCCGGTTCGTATGTACAAAGGGGGGATCAAGCTTCTATAATTGGAGGAGCTATAGACTTTGTTAGAGAGTTGGAGCAGCTCCTGCAGTGCTTGGAATCACAGAAGCGGAGAAGGCTCTTAGGCGAAGCGCCTCCTCCAAGACAAGTAGGAGCTGATTCCGCTGCGGCGGCTAATATGGCGGTGCTGCCTTCACAACCAGATCATCAAGGGGGTGGTGGCGTGCCATTCTTTCCGGTGCCTGATTTGCCTCTGAATCCAAATGATCCAAACAAGTTCGTGGACTTTGAAACGGGGCTCCGAGAAGAAACTGCCGAGAGCAAGTCGTGCTTCGCAGATGTTGAAGTGAAGGTTTTAGGGGGTGATGCCATGATCAAGATTCTTTCTCAGAGAAGACCTGGACAGCTCATTAAGGCCATTGCTGCCCTTGAAGATTTGCAGCTGACGATTCTTCACACTAACATCACCACAATCGAACAAACTGTTCTATATTGCTTTAAGGTTGCAAGTGAATCGAGGTTCACGGCTGAAGATATTGCAAGTTCGGTTCAACAGATATTCAGCTTTATCCATGCAAACACCGCCAGCGTCATGTGA

Protein Analysis

451

Amino Acids

50.26

Weight (kDa)

5.29

Isoelectric Point (pI)

57.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 232 - 283 1.9e-11 Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant PF22754 370 - 444 1.8e-07 Plant bHLH transcription factor, ACT-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011314)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 483
AccB1I GGYRCC 1 cut(s) 994
AccI GTMKAC 1 cut(s) 123
AclWI GGATC 3 cut(s) 453, 792, 1016
AcuI CTGAAG 1 cut(s) 1305
AfaI GTAC 4 cut(s) 280, 550, 652, 774
AfiI CCNNNNNNNGG 3 cut(s) 257, 605, 705
AflII CTTAAG 1 cut(s) 401
AjiI CACGTC 1 cut(s) 310
AjnI CCWGG 1 cut(s) 1153
AloI GAACNNNNNNTCC 2 cut(s) 573, 605
Alw26I GTCTC 2 cut(s) 62, 456
AlwI GGATC 3 cut(s) 453, 792, 1016
AlwNI CAGNNNCTG 3 cut(s) 103, 454, 841
Ama87I CYCGRG 1 cut(s) 531
AoxI GGCC 2 cut(s) 641, 1170
AspLEI GCGC 1 cut(s) 889
AspS9I GGNCC 2 cut(s) 332, 476
AsuC2I CCSGG 3 cut(s) 379, 389, 762
AsuHPI GGTGA 4 cut(s) 182, 527, 1130, 1213
AvaI CYCGRG 1 cut(s) 531
AvaII GGWCC 2 cut(s) 332, 476
BanI GGYRCC 1 cut(s) 994
BanII GRGCYC 1 cut(s) 1056
BbsI GAAGAC 2 cut(s) 375, 1156
BccI CCATC 3 cut(s) 87, 451, 467
BceAI ACGGC 2 cut(s) 683, 1296
BcgI CGANNNNNNTGC 2 cut(s) 1251, 1285
BciT130I CCWGG 1 cut(s) 1155
BclI TGATCA 3 cut(s) 85, 184, 1128
BcnI CCSGG 3 cut(s) 379, 389, 762
BcoDI GTCTC 2 cut(s) 62, 456
BfaI CTAG 2 cut(s) 341, 600
BfmI CTRYAG 2 cut(s) 810, 842
BfoI RGCGCY 1 cut(s) 890
BfrI CTTAAG 1 cut(s) 401
BlpI GCTNAGC 1 cut(s) 296
BmcAI AGTACT 3 cut(s) 280, 550, 652
Bme1390I CCNGG 4 cut(s) 379, 389, 762, 1155
Bme18I GGWCC 2 cut(s) 332, 476
BmeT110I CYCGRG 1 cut(s) 531
BmgBI CACGTC 1 cut(s) 310
BmgT120I GGNCC 2 cut(s) 332, 476
BmiI GGNNCC 6 cut(s) 334, 462, 618, 710, 996, 1055
BmrFI CCNGG 4 cut(s) 379, 389, 762, 1155
BmsI GCATC 3 cut(s) 303, 742, 1111
BoxI GACNNNNGTC 1 cut(s) 486
BpiI GAAGAC 2 cut(s) 375, 1156
BpmI CTGGAG 1 cut(s) 635
Bpu1102I GCTNAGC 1 cut(s) 296
BpuMI CCSGG 3 cut(s) 379, 389, 762
BsaBI GATNNNNATC 2 cut(s) 90, 444
BsaI GGTCTC 1 cut(s) 62
BsaWI WCCGGW 3 cut(s) 512, 570, 991
BsaXI ACNNNNNCTCC 2 cut(s) 573, 603
Bsc4I CCNNNNNNNGG 3 cut(s) 257, 605, 705
Bse1I ACTGG 1 cut(s) 618
Bse3DI GCAATG 1 cut(s) 1173
Bse8I GATNNNNATC 2 cut(s) 90, 444
BseBI CCWGG 1 cut(s) 1155
BseGI GGATG 4 cut(s) 113, 244, 478, 690
BseJI GATNNNNATC 2 cut(s) 90, 444
BseLI CCNNNNNNNGG 3 cut(s) 257, 605, 705
BseMI GCAATG 1 cut(s) 1173
BseMII CTCAG 3 cut(s) 287, 760, 1157
BseNI ACTGG 1 cut(s) 618
BseRI GAGGAG 4 cut(s) 240, 618, 819, 882
BsgI GTGCAG 1 cut(s) 584
BshFI GGCC 2 cut(s) 643, 1172
BshNI GGYRCC 1 cut(s) 994
BsiHKCI CYCGRG 1 cut(s) 531
BsiSI CCGG 7 cut(s) 254, 378, 389, 513, 571, 762, 992
BslI CCNNNNNNNGG 3 cut(s) 257, 605, 705
BsmAI GTCTC 2 cut(s) 62, 456
BsnI GGCC 2 cut(s) 643, 1172
Bso31I GGTCTC 1 cut(s) 62
BsoBI CYCGRG 1 cut(s) 531
Bsp1286I GDGCHC 1 cut(s) 1056
Bsp1407I TGTACA 1 cut(s) 772
Bsp143I GATC 9 cut(s) 85, 91, 184, 196, 445, 784, 958, 1021, 1128
Bsp1720I GCTNAGC 1 cut(s) 296
BspANI GGCC 2 cut(s) 643, 1172
BspCNI CTCAG 3 cut(s) 288, 759, 1156
BspHI TCATGA 1 cut(s) 82
BspLI GGNNCC 6 cut(s) 334, 462, 618, 710, 996, 1055
BspMAI CTGCAG 1 cut(s) 846
BspPI GGATC 3 cut(s) 453, 792, 1016
BspT107I GGYRCC 1 cut(s) 994
BspTI CTTAAG 1 cut(s) 401
BspTNI GGTCTC 1 cut(s) 62
BsrDI GCAATG 1 cut(s) 1173
BsrGI TGTACA 1 cut(s) 772
BsrI ACTGG 1 cut(s) 618
BssMI GATC 9 cut(s) 85, 91, 184, 196, 445, 784, 958, 1021, 1128
Bst2UI CCWGG 1 cut(s) 1155
Bst4CI ACNGT 3 cut(s) 56, 485, 1240
Bst6I CTCTTC 3 cut(s) 6, 489, 516
BstAFI CTTAAG 1 cut(s) 401
BstAPI GCANNNNNTGC 2 cut(s) 841, 1083
BstAUI TGTACA 1 cut(s) 772
BstC8I GCNNGC 3 cut(s) 680, 980, 1342
BstDEI CTNAG 7 cut(s) 70, 296, 624, 654, 746, 877, 1143
BstENI CCTNNNNNAGG 2 cut(s) 255, 603
BstF5I GGATG 4 cut(s) 113, 244, 478, 690
BstH2I RGCGCY 1 cut(s) 890
BstHHI GCGC 1 cut(s) 889
BstKTI GATC 9 cut(s) 88, 94, 187, 199, 448, 787, 961, 1024, 1131
BstMAI GTCTC 2 cut(s) 62, 456
BstMBI GATC 9 cut(s) 85, 91, 184, 196, 445, 784, 958, 1021, 1128
BstMWI GCNNNNNNNGC 9 cut(s) 841, 871, 917, 926, 935, 1003, 1083, 1178, 1337
BstNI CCWGG 1 cut(s) 1155
BstPAI GACNNNNGTC 1 cut(s) 486
BstSCI CCNGG 4 cut(s) 377, 387, 760, 1153
BstSFI CTRYAG 2 cut(s) 810, 842
BstV2I GAAGAC 2 cut(s) 375, 1156
BsuRI GGCC 2 cut(s) 643, 1172
BtrI CACGTC 1 cut(s) 310
BtsCI GGATG 4 cut(s) 113, 244, 478, 690
BtsI GCAGTG 1 cut(s) 851
BtsIMutI CAGTG 1 cut(s) 851
Cac8I GCNNGC 3 cut(s) 680, 980, 1342
CaiI CAGNNNCTG 3 cut(s) 103, 454, 841
CciI TCATGA 1 cut(s) 82
CfoI GCGC 1 cut(s) 889
Cfr13I GGNCC 2 cut(s) 332, 476
CseI GACGC 2 cut(s) 247, 1333
Csp6I GTAC 4 cut(s) 279, 549, 651, 773
CviAII CATG 7 cut(s) 83, 119, 194, 757, 1126, 1328, 1348
CviQI GTAC 4 cut(s) 279, 549, 651, 773
DdeI CTNAG 7 cut(s) 70, 296, 624, 654, 746, 877, 1143
DpnI GATC 9 cut(s) 87, 93, 186, 198, 447, 786, 960, 1023, 1130
DpnII GATC 9 cut(s) 85, 91, 184, 196, 445, 784, 958, 1021, 1128
DrdI GACNNNNNNGTC 1 cut(s) 483
DseDI GACNNNNNNGTC 1 cut(s) 483
Eam1104I CTCTTC 3 cut(s) 6, 489, 516
EarI CTCTTC 3 cut(s) 6, 489, 516
Eco24I GRGCYC 1 cut(s) 1056
Eco31I GGTCTC 1 cut(s) 62
Eco47I GGWCC 2 cut(s) 332, 476
Eco57I CTGAAG 1 cut(s) 1305
Eco88I CYCGRG 1 cut(s) 531
EcoNI CCTNNNNNAGG 2 cut(s) 255, 603
EcoRII CCWGG 1 cut(s) 1153
EcoT38I GRGCYC 1 cut(s) 1056
FaeI CATG 7 cut(s) 86, 122, 197, 760, 1129, 1331, 1351
FalI AAGNNNNNCTT 4 cut(s) 284, 316, 1070, 1102
FatI CATG 7 cut(s) 82, 118, 193, 756, 1125, 1327, 1347
FbaI TGATCA 3 cut(s) 85, 184, 1128
FblI GTMKAC 1 cut(s) 123
FokI GGATG 4 cut(s) 100, 231, 485, 697
FriOI GRGCYC 1 cut(s) 1056
FspBI CTAG 2 cut(s) 341, 600
GlaI GCGC 1 cut(s) 888
GsuI CTGGAG 1 cut(s) 635
HaeII RGCGCY 1 cut(s) 890
HaeIII GGCC 2 cut(s) 643, 1172
HapII CCGG 7 cut(s) 254, 378, 389, 513, 571, 762, 992
HgaI GACGC 2 cut(s) 247, 1333
HhaI GCGC 1 cut(s) 889
Hin1II CATG 7 cut(s) 86, 122, 197, 760, 1129, 1331, 1351
Hin6I GCGC 1 cut(s) 887
HinP1I GCGC 1 cut(s) 887
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HindIII AAGCTT 2 cut(s) 46, 789
HpaII CCGG 7 cut(s) 254, 378, 389, 513, 571, 762, 992
HphI GGTGA 4 cut(s) 182, 527, 1130, 1213
Hpy166II GTNNAC 4 cut(s) 124, 394, 1039, 1278
Hpy188I TCNGA 5 cut(s) 367, 456, 1011, 1058, 1146
Hpy188III TCNNGA 7 cut(s) 59, 83, 89, 143, 491, 665, 1132
Hpy8I GTNNAC 4 cut(s) 124, 394, 1039, 1278
Hpy99I CGWCG 2 cut(s) 311, 440
HpyAV CCTTC 4 cut(s) 708, 864, 957, 1099
HpyCH4III ACNGT 3 cut(s) 56, 485, 1240
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 7 cut(s) 316, 565, 844, 1195, 1262, 1295, 1331
HpyF10VI GCNNNNNNNGC 9 cut(s) 841, 871, 917, 926, 935, 1003, 1083, 1178, 1337
HpyF3I CTNAG 7 cut(s) 70, 296, 624, 654, 746, 877, 1143
HpySE526I ACGT 1 cut(s) 309
Hsp92II CATG 7 cut(s) 86, 122, 197, 760, 1129, 1331, 1351
HspAI GCGC 1 cut(s) 887
Ksp22I TGATCA 3 cut(s) 85, 184, 1128
Kzo9I GATC 9 cut(s) 85, 91, 184, 196, 445, 784, 958, 1021, 1128
LmnI GCTCC 7 cut(s) 573, 616, 806, 832, 843, 908, 1059
LweI GCATC 3 cut(s) 303, 742, 1111
MaeI CTAG 2 cut(s) 341, 600
MaeII ACGT 1 cut(s) 309
MaeIII GTNAC 2 cut(s) 140, 750
MalI GATC 9 cut(s) 87, 93, 186, 198, 447, 786, 960, 1023, 1130
MboI GATC 9 cut(s) 85, 91, 184, 196, 445, 784, 958, 1021, 1128
MhlI GDGCHC 1 cut(s) 1056
MluCI AATT 3 cut(s) 169, 556, 798
MlyI GAGTC 3 cut(s) 148, 670, 682
MmeI TCCRAC 1 cut(s) 810
MseI TTAA 5 cut(s) 51, 347, 402, 1167, 1254
MslI CAYNNNNRTG 2 cut(s) 81, 192
MspA1I CMGCKG 4 cut(s) 103, 682, 920, 1198
MspCI CTTAAG 1 cut(s) 401
MspI CCGG 7 cut(s) 254, 378, 389, 513, 571, 762, 992
MspR9I CCNGG 4 cut(s) 379, 389, 762, 1155
MvaI CCWGG 1 cut(s) 1155
MwoI GCNNNNNNNGC 9 cut(s) 841, 871, 917, 926, 935, 1003, 1083, 1178, 1337
NciI CCSGG 3 cut(s) 379, 389, 762
NdeII GATC 9 cut(s) 85, 91, 184, 196, 445, 784, 958, 1021, 1128
NlaIII CATG 7 cut(s) 86, 122, 197, 760, 1129, 1331, 1351
NlaIV GGNNCC 6 cut(s) 334, 462, 618, 710, 996, 1055
NmeAIII GCCGAG 2 cut(s) 5, 1096
NmuCI GTSAC 2 cut(s) 140, 750
PaeR7I CTCGAG 1 cut(s) 531
PagI TCATGA 1 cut(s) 82
PfeI GAWTC 7 cut(s) 374, 854, 914, 1012, 1135, 1204, 1268
PfoI TCCNGGA 1 cut(s) 377
PleI GAGTC 3 cut(s) 147, 669, 682
PpsI GAGTC 3 cut(s) 147, 669, 682
PshAI GACNNNNGTC 1 cut(s) 486
Psp6I CCWGG 1 cut(s) 1153
PspGI CCWGG 1 cut(s) 1153
PspN4I GGNNCC 6 cut(s) 334, 462, 618, 710, 996, 1055
PspPI GGNCC 2 cut(s) 332, 476
PspXI VCTCGAGB 1 cut(s) 531
PstI CTGCAG 1 cut(s) 846
PstNI CAGNNNCTG 3 cut(s) 103, 454, 841
PvuII CAGCTG 2 cut(s) 103, 1198
RsaI GTAC 4 cut(s) 280, 550, 652, 774
RsaNI GTAC 4 cut(s) 279, 549, 651, 773
RseI CAYNNNNRTG 2 cut(s) 81, 192
SalI GTCGAC 1 cut(s) 122
SaqAI TTAA 5 cut(s) 51, 347, 402, 1167, 1254
Sau3AI GATC 9 cut(s) 85, 91, 184, 196, 445, 784, 958, 1021, 1128
Sau96I GGNCC 2 cut(s) 332, 476
ScaI AGTACT 3 cut(s) 280, 550, 652
SchI GAGTC 3 cut(s) 148, 670, 682
ScrFI CCNGG 4 cut(s) 379, 389, 762, 1155
SduI GDGCHC 1 cut(s) 1056
SfaNI GCATC 3 cut(s) 303, 742, 1111
SfcI CTRYAG 2 cut(s) 810, 842
Sfr274I CTCGAG 1 cut(s) 531
SinI GGWCC 2 cut(s) 332, 476
SlaI CTCGAG 1 cut(s) 531
SmiMI CAYNNNNRTG 2 cut(s) 81, 192
SmlI CTYRAG 2 cut(s) 401, 531
SmoI CTYRAG 2 cut(s) 401, 531
Sse9I AATT 3 cut(s) 169, 556, 798
SspMI CTAG 2 cut(s) 341, 600
StyD4I CCNGG 4 cut(s) 377, 387, 760, 1153
TaaI ACNGT 3 cut(s) 56, 485, 1240
TaiI ACGT 1 cut(s) 312
TaqI TCGA 7 cut(s) 60, 123, 137, 532, 739, 1230, 1271
TasI AATT 3 cut(s) 169, 556, 798
TatI WGTACW 4 cut(s) 278, 548, 650, 772
TauI GCSGC 3 cut(s) 622, 926, 929
TfiI GAWTC 7 cut(s) 374, 854, 914, 1012, 1135, 1204, 1268
Tru1I TTAA 5 cut(s) 51, 347, 402, 1167, 1254
Tru9I TTAA 5 cut(s) 51, 347, 402, 1167, 1254
TscAI CASTG 1 cut(s) 851
TseFI GTSAC 2 cut(s) 140, 750
Tsp45I GTSAC 2 cut(s) 140, 750
TspDTI ATGAA 2 cut(s) 122, 740
TspRI CASTG 1 cut(s) 851
Vha464I CTTAAG 1 cut(s) 401
VpaK11BI GGWCC 2 cut(s) 332, 476
XagI CCTNNNNNAGG 2 cut(s) 255, 603
XhoI CTCGAG 1 cut(s) 531
XmiI GTMKAC 1 cut(s) 123
XspI CTAG 2 cut(s) 341, 600
ZrmI AGTACT 3 cut(s) 280, 550, 652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.