Prupe.1G006600_v2.0.a1

transcription factor

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
558639 .. 560976
2338 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G006600.1

Sequence Viewer

Length: 1323 bp
ATGGAGAAAGAGGAGAACAACTACTCGGCTTTTATGCCCCCTGGTAACTTTAACAACCTGGATTACACCCTAGATCATCATCATGATGAAGATCAGCAGATGATGAAGTCTCGCATCGACGAGACTCCAAGTGAGAACAACAATGGAATGGTCAATTACTTGATGAACAATCACCATCAACTACAACAACAGCAACAACAAATGAGCACACAACTAGCTCCAGCTGGGTTTTGTGGTTCAACAAGTACTTCTTTTGATAAGCTGAGCTTCGCCGACGTGATGCAGTTTGCGGATTTTGGACCCAAGTTGGGCTTAAACCAAACCAAGATTTCAGAAGAAGAACCCTCCGGAGTTGACCCTGTTTACTTCCTCAAGTTTCCGGTGTTGAACGACAAGTTCGACAACGATGTCATGGTTCCACAAGCTGAAGAGAGATTTACAGGGTTGGGTGAAGAAGGCAAGACAAAGTCAATGGAAGAAGATCAAGATGAGGAGGCTCGGGTTTCGGGTAGTAATTCCGTGCAGCAGCTCCAGTTTCTTGGAGAAGATCTTGAAAACAACCCTAGAGGAGGAGTAGAACCGGAGCCTGCAGCCAAGAACAAAAGAAAAAGACCAAGAACTACCAAGACGACTCAAGAAGTCGAAAGCCAGCGGATGACCCACATCGCCGTGGAAAGAAACCGCAGGAAGCAAATGAATGAGCATCTTCGTGTGCTCCGGTCCCTCATGCCTGGCTCATATGTACAACGAGGGGATCAAGCTTCTATCATTGGAGGAGCCATAGAGTTTGTGAGAGAATTAGAGCAGTTGCTTCAGTGCTTGGAATCACAAAAGCGGAGAAGGCTCTTAGGAGAAGCTCCAAGACATGAGGTGGGAGAATCTGCAGGAGCGATGGCTATGGCGGTGATGCCTGCAGTACAGGCAGCTCAAGGCGGCAGCGGGGGACCATTAATCTTTCCGGCTGCTAATTTGCCTGTGAATCCAAATGATCCTATCAAGTTCGTCGACTTCGAAACGGGGCTTCGAGAAGAAACGGCTGAGAACAAGTCGTGCTTTGCTGATGTTGAGGTGAAAGTTTTAGGGTTTGATGCGATGATCAAGATTTTGTCTCAAAGGAGACCAGGGCAGCTCATTAAGGCCATTGCTGCGCTTGAGGATTTGCAGCTTAACATTCTTCACACTAACATCACCACCATCGAACAAACTGTTCTATATTCCTTTAATGTCAAGGTTGAGAGTGAATCGAGGTTCACGGCTGAAGATATAGCAACCTCAGTTCAGCAGATATTCAGTTTTATTCATGCAAACACCGCCAGCATGTGA

Protein Analysis

441

Amino Acids

49.26

Weight (kDa)

5.02

Isoelectric Point (pI)

57.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011314)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 407
AccI GTMKAC 1 cut(s) 1005
AccIII TCCGGA 1 cut(s) 347
AciI CCGC 8 cut(s) 290, 652, 682, 835, 902, 933, 939, 1311
AclWI GGATC 2 cut(s) 762, 983
AcuI CTGAAG 3 cut(s) 447, 797, 1278
AfaI GTAC 3 cut(s) 247, 744, 918
AfiI CCNNNNNNNGG 2 cut(s) 308, 569
AgsI TTSAA 3 cut(s) 240, 388, 554
AjiI CACGTC 1 cut(s) 277
AjnI CCWGG 4 cut(s) 40, 57, 730, 1120
Alw21I GWGCWC 2 cut(s) 209, 717
Alw26I GTCTC 4 cut(s) 114, 116, 1111, 1113
AlwI GGATC 2 cut(s) 762, 983
Ama87I CYCGRG 1 cut(s) 498
Aor13HI TCCGGA 1 cut(s) 347
AoxI GGCC 1 cut(s) 1137
ApeKI GCWGC 9 cut(s) 523, 526, 590, 923, 936, 962, 1126, 1145, 1162
AseI ATTAAT 1 cut(s) 950
AspLEI GCGC 1 cut(s) 1150
AspS9I GGNCC 3 cut(s) 299, 720, 944
AsuHPI GGTGA 5 cut(s) 164, 461, 916, 1081, 1180
AsuII TTCGAA 1 cut(s) 1011
AvaI CYCGRG 1 cut(s) 498
AvaII GGWCC 3 cut(s) 299, 720, 944
Bbv12I GWGCWC 2 cut(s) 209, 717
BbvI GCAGC 9 cut(s) 535, 538, 602, 935, 948, 949, 1132, 1138, 1174
BccI CCATC 3 cut(s) 183, 886, 1202
BceAI ACGGC 3 cut(s) 653, 1050, 1269
BciT130I CCWGG 4 cut(s) 42, 59, 732, 1122
BclI TGATCA 1 cut(s) 1095
BcoDI GTCTC 4 cut(s) 114, 116, 1111, 1113
BfaI CTAG 3 cut(s) 71, 215, 564
BfmI CTRYAG 3 cut(s) 588, 882, 912
BglII AGATCT 1 cut(s) 547
BlpI GCTNAGC 1 cut(s) 263
BmcAI AGTACT 1 cut(s) 247
Bme1390I CCNGG 4 cut(s) 42, 59, 732, 1122
Bme18I GGWCC 3 cut(s) 299, 720, 944
BmeT110I CYCGRG 1 cut(s) 498
BmgBI CACGTC 1 cut(s) 277
BmgT120I GGNCC 3 cut(s) 299, 720, 944
BmiI GGNNCC 6 cut(s) 301, 417, 585, 722, 778, 945
BmrFI CCNGG 4 cut(s) 42, 59, 732, 1122
BmsI GCATC 5 cut(s) 123, 270, 712, 897, 1078
BpmI CTGGAG 2 cut(s) 204, 515
Bpu1102I GCTNAGC 1 cut(s) 263
Bpu14I TTCGAA 1 cut(s) 1011
BpuEI CTTGAG 4 cut(s) 356, 618, 912, 1172
BsaBI GATNNNNATC 2 cut(s) 78, 90
BsaI GGTCTC 1 cut(s) 1111
BsaJI CCNNGG 3 cut(s) 40, 669, 1121
BsaWI WCCGGW 4 cut(s) 347, 379, 580, 717
Bsc4I CCNNNNNNNGG 2 cut(s) 308, 569
Bse1I ACTGG 1 cut(s) 532
Bse3DI GCAATG 1 cut(s) 1140
Bse8I GATNNNNATC 2 cut(s) 78, 90
BseAI TCCGGA 1 cut(s) 347
BseBI CCWGG 4 cut(s) 42, 59, 732, 1122
BseDI CCNNGG 3 cut(s) 40, 669, 1121
BseGI GGATG 1 cut(s) 660
BseJI GATNNNNATC 2 cut(s) 78, 90
BseLI CCNNNNNNNGG 2 cut(s) 308, 569
BseMI GCAATG 1 cut(s) 1140
BseMII CTCAG 3 cut(s) 254, 1029, 1287
BseNI ACTGG 1 cut(s) 532
BseRI GAGGAG 5 cut(s) 26, 506, 582, 585, 789
BseXI GCAGC 9 cut(s) 535, 538, 602, 935, 948, 949, 1132, 1138, 1174
BseYI CCCAGC 1 cut(s) 224
BsgI GTGCAG 1 cut(s) 542
BshFI GGCC 1 cut(s) 1139
BsiHKAI GWGCWC 2 cut(s) 209, 717
BsiHKCI CYCGRG 1 cut(s) 498
BsiSI CCGG 5 cut(s) 348, 380, 581, 718, 959
BslFI GGGAC 2 cut(s) 706, 957
BslI CCNNNNNNNGG 2 cut(s) 308, 569
BsmAI GTCTC 4 cut(s) 114, 116, 1111, 1113
BsmFI GGGAC 2 cut(s) 706, 957
BsnI GGCC 1 cut(s) 1139
Bso31I GGTCTC 1 cut(s) 1111
BsoBI CYCGRG 1 cut(s) 498
Bsp119I TTCGAA 1 cut(s) 1011
Bsp1286I GDGCHC 2 cut(s) 209, 717
Bsp13I TCCGGA 1 cut(s) 347
Bsp1407I TGTACA 1 cut(s) 742
Bsp143I GATC 7 cut(s) 73, 91, 481, 547, 754, 988, 1095
Bsp1720I GCTNAGC 1 cut(s) 263
BspACI CCGC 8 cut(s) 290, 652, 682, 835, 902, 933, 939, 1311
BspANI GGCC 1 cut(s) 1139
BspCNI CTCAG 3 cut(s) 255, 1030, 1286
BspEI TCCGGA 1 cut(s) 347
BspHI TCATGA 1 cut(s) 82
BspLI GGNNCC 6 cut(s) 301, 417, 585, 722, 778, 945
BspMAI CTGCAG 3 cut(s) 592, 886, 916
BspPI GGATC 2 cut(s) 762, 983
BspT104I TTCGAA 1 cut(s) 1011
BspTNI GGTCTC 1 cut(s) 1111
BsrDI GCAATG 1 cut(s) 1140
BsrGI TGTACA 1 cut(s) 742
BsrI ACTGG 1 cut(s) 532
BssECI CCNNGG 3 cut(s) 40, 669, 1121
BssMI GATC 7 cut(s) 73, 91, 481, 547, 754, 988, 1095
Bst2UI CCWGG 4 cut(s) 42, 59, 732, 1122
Bst4CI ACNGT 1 cut(s) 1207
Bst6I CTCTTC 1 cut(s) 423
BstAUI TGTACA 1 cut(s) 742
BstBI TTCGAA 1 cut(s) 1011
BstC8I GCNNGC 4 cut(s) 588, 650, 912, 1315
BstDEI CTNAG 4 cut(s) 263, 847, 1038, 1273
BstDSI CCRYGG 1 cut(s) 669
BstENI CCTNNNNNAGG 1 cut(s) 567
BstF5I GGATG 1 cut(s) 660
BstHHI GCGC 1 cut(s) 1150
BstKTI GATC 7 cut(s) 76, 94, 484, 550, 757, 991, 1098
BstMAI GTCTC 4 cut(s) 114, 116, 1111, 1113
BstMBI GATC 7 cut(s) 73, 91, 481, 547, 754, 988, 1095
BstMWI GCNNNNNNNGC 4 cut(s) 841, 920, 1145, 1310
BstNI CCWGG 4 cut(s) 42, 59, 732, 1122
BstNSI RCATGY 1 cut(s) 1321
BstSCI CCNGG 4 cut(s) 40, 57, 730, 1120
BstSFI CTRYAG 3 cut(s) 588, 882, 912
BstV1I GCAGC 9 cut(s) 535, 538, 602, 935, 948, 949, 1132, 1138, 1174
BstX2I RGATCY 1 cut(s) 547
BstXI CCANNNNNNTGG 1 cut(s) 539
BstYI RGATCY 1 cut(s) 547
BsuRI GGCC 1 cut(s) 1139
BtgI CCRYGG 1 cut(s) 669
BtgZI GCGATG 3 cut(s) 649, 905, 1106
BtrI CACGTC 1 cut(s) 277
BtsCI GGATG 1 cut(s) 660
BtsIMutI CAGTG 1 cut(s) 821
Cac8I GCNNGC 4 cut(s) 588, 650, 912, 1315
CciI TCATGA 1 cut(s) 82
CfoI GCGC 1 cut(s) 1150
Cfr13I GGNCC 3 cut(s) 299, 720, 944
Csp6I GTAC 3 cut(s) 246, 743, 917
CviAII CATG 6 cut(s) 83, 412, 727, 866, 1301, 1318
CviQI GTAC 3 cut(s) 246, 743, 917
DdeI CTNAG 4 cut(s) 263, 847, 1038, 1273
DpnI GATC 7 cut(s) 75, 93, 483, 549, 756, 990, 1097
DpnII GATC 7 cut(s) 73, 91, 481, 547, 754, 988, 1095
DrdI GACNNNNNNGTC 1 cut(s) 407
DseDI GACNNNNNNGTC 1 cut(s) 407
Eam1104I CTCTTC 1 cut(s) 423
EarI CTCTTC 1 cut(s) 423
Eco31I GGTCTC 1 cut(s) 1111
Eco47I GGWCC 3 cut(s) 299, 720, 944
Eco57I CTGAAG 3 cut(s) 447, 797, 1278
Eco88I CYCGRG 1 cut(s) 498
EcoNI CCTNNNNNAGG 1 cut(s) 567
EcoRII CCWGG 4 cut(s) 40, 57, 730, 1120
FaeI CATG 6 cut(s) 86, 415, 730, 869, 1304, 1321
FalI AAGNNNNNCTT 8 cut(s) 235, 267, 251, 283, 296, 328, 1037, 1069
FaqI GGGAC 2 cut(s) 706, 957
FatI CATG 6 cut(s) 82, 411, 726, 865, 1300, 1317
FauI CCCGC 1 cut(s) 932
FauNDI CATATG 1 cut(s) 739
FbaI TGATCA 1 cut(s) 1095
FblI GTMKAC 1 cut(s) 1005
FokI GGATG 1 cut(s) 667
FspBI CTAG 3 cut(s) 71, 215, 564
GlaI GCGC 1 cut(s) 1149
GsaI CCCAGC 1 cut(s) 228
GsuI CTGGAG 2 cut(s) 204, 515
HaeIII GGCC 1 cut(s) 1139
HapII CCGG 5 cut(s) 348, 380, 581, 718, 959
HhaI GCGC 1 cut(s) 1150
Hin1II CATG 6 cut(s) 86, 415, 730, 869, 1304, 1321
Hin6I GCGC 1 cut(s) 1148
HinP1I GCGC 1 cut(s) 1148
HincII GTYRAC 2 cut(s) 355, 1006
HindII GTYRAC 2 cut(s) 355, 1006
HindIII AAGCTT 1 cut(s) 759
HinfI GANTC 6 cut(s) 124, 631, 824, 878, 979, 1241
HpaII CCGG 5 cut(s) 348, 380, 581, 718, 959
HphI GGTGA 5 cut(s) 164, 461, 916, 1081, 1180
Hpy166II GTNNAC 4 cut(s) 355, 364, 1006, 1251
Hpy188I TCNGA 1 cut(s) 334
Hpy188III TCNNGA 7 cut(s) 83, 348, 485, 551, 635, 1025, 1099
Hpy8I GTNNAC 4 cut(s) 355, 364, 1006, 1251
Hpy99I CGWCG 3 cut(s) 122, 278, 1007
HpyAV CCTTC 2 cut(s) 449, 834
HpyCH4III ACNGT 1 cut(s) 1207
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 7 cut(s) 283, 523, 590, 884, 914, 1162, 1304
HpyF10VI GCNNNNNNNGC 4 cut(s) 841, 920, 1145, 1310
HpyF3I CTNAG 4 cut(s) 263, 847, 1038, 1273
HpySE526I ACGT 1 cut(s) 276
Hsp92II CATG 6 cut(s) 86, 415, 730, 869, 1304, 1321
HspAI GCGC 1 cut(s) 1148
Kpn2I TCCGGA 1 cut(s) 347
Ksp22I TGATCA 1 cut(s) 1095
Kzo9I GATC 7 cut(s) 73, 91, 481, 547, 754, 988, 1095
LmnI GCTCC 7 cut(s) 223, 534, 583, 720, 776, 862, 887
Lsp1109I GCAGC 9 cut(s) 535, 538, 602, 935, 948, 949, 1132, 1138, 1174
LweI GCATC 5 cut(s) 123, 270, 712, 897, 1078
MaeI CTAG 3 cut(s) 71, 215, 564
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 1 cut(s) 44
MalI GATC 7 cut(s) 75, 93, 483, 549, 756, 990, 1097
MboI GATC 7 cut(s) 73, 91, 481, 547, 754, 988, 1095
MflI RGATCY 1 cut(s) 547
MhlI GDGCHC 2 cut(s) 209, 717
MluCI AATT 4 cut(s) 154, 514, 797, 967
MlyI GAGTC 2 cut(s) 118, 625
MroI TCCGGA 1 cut(s) 347
MseI TTAA 6 cut(s) 51, 314, 950, 1134, 1167, 1221
MslI CAYNNNNRTG 4 cut(s) 81, 84, 668, 708
MspA1I CMGCKG 3 cut(s) 224, 652, 939
MspI CCGG 5 cut(s) 348, 380, 581, 718, 959
MspR9I CCNGG 4 cut(s) 42, 59, 732, 1122
MvaI CCWGG 4 cut(s) 42, 59, 732, 1122
MwoI GCNNNNNNNGC 4 cut(s) 841, 920, 1145, 1310
NdeI CATATG 1 cut(s) 739
NdeII GATC 7 cut(s) 73, 91, 481, 547, 754, 988, 1095
NlaIII CATG 6 cut(s) 86, 415, 730, 869, 1304, 1321
NlaIV GGNNCC 6 cut(s) 301, 417, 585, 722, 778, 945
NmeAIII GCCGAG 1 cut(s) 5
NspI RCATGY 1 cut(s) 1321
NspV TTCGAA 1 cut(s) 1011
PagI TCATGA 1 cut(s) 82
PcsI WCGNNNNNNNCGW 2 cut(s) 396, 1008
PfeI GAWTC 4 cut(s) 824, 878, 979, 1241
PflFI GACNNNGTC 1 cut(s) 466
PleI GAGTC 2 cut(s) 118, 625
PpsI GAGTC 2 cut(s) 118, 625
PshBI ATTAAT 1 cut(s) 950
Psp6I CCWGG 4 cut(s) 40, 57, 730, 1120
PspFI CCCAGC 1 cut(s) 224
PspGI CCWGG 4 cut(s) 40, 57, 730, 1120
PspN4I GGNNCC 6 cut(s) 301, 417, 585, 722, 778, 945
PspPI GGNCC 3 cut(s) 299, 720, 944
PstI CTGCAG 3 cut(s) 592, 886, 916
PsuI RGATCY 1 cut(s) 547
PsyI GACNNNGTC 1 cut(s) 466
PvuII CAGCTG 1 cut(s) 224
RsaI GTAC 3 cut(s) 247, 744, 918
RsaNI GTAC 3 cut(s) 246, 743, 917
RseI CAYNNNNRTG 4 cut(s) 81, 84, 668, 708
SalI GTCGAC 1 cut(s) 1004
SaqAI TTAA 6 cut(s) 51, 314, 950, 1134, 1167, 1221
Sau3AI GATC 7 cut(s) 73, 91, 481, 547, 754, 988, 1095
Sau96I GGNCC 3 cut(s) 299, 720, 944
ScaI AGTACT 1 cut(s) 247
SchI GAGTC 2 cut(s) 118, 625
ScrFI CCNGG 4 cut(s) 42, 59, 732, 1122
SduI GDGCHC 2 cut(s) 209, 717
SfaNI GCATC 5 cut(s) 123, 270, 712, 897, 1078
SfcI CTRYAG 3 cut(s) 588, 882, 912
SfuI TTCGAA 1 cut(s) 1011
SinI GGWCC 3 cut(s) 299, 720, 944
SmiMI CAYNNNNRTG 4 cut(s) 81, 84, 668, 708
SmlI CTYRAG 4 cut(s) 371, 633, 927, 1151
SmoI CTYRAG 4 cut(s) 371, 633, 927, 1151
Sse9I AATT 4 cut(s) 154, 514, 797, 967
SsiI CCGC 8 cut(s) 290, 652, 682, 835, 902, 933, 939, 1311
SspMI CTAG 3 cut(s) 71, 215, 564
StyD4I CCNGG 4 cut(s) 40, 57, 730, 1120
TaaI ACNGT 1 cut(s) 1207
TaiI ACGT 1 cut(s) 279
TaqI TCGA 8 cut(s) 117, 399, 642, 1005, 1011, 1024, 1197, 1244
TasI AATT 4 cut(s) 154, 514, 797, 967
TatI WGTACW 3 cut(s) 245, 742, 916
TauI GCSGC 1 cut(s) 936
TfiI GAWTC 4 cut(s) 824, 878, 979, 1241
Tru1I TTAA 6 cut(s) 51, 314, 950, 1134, 1167, 1221
Tru9I TTAA 6 cut(s) 51, 314, 950, 1134, 1167, 1221
TscAI CASTG 1 cut(s) 821
TseI GCWGC 9 cut(s) 523, 526, 590, 923, 936, 962, 1126, 1145, 1162
TspDTI ATGAA 5 cut(s) 102, 119, 179, 710, 1289
TspGWI ACGGA 1 cut(s) 508
TspRI CASTG 1 cut(s) 821
Tth111I GACNNNGTC 1 cut(s) 466
VpaK11BI GGWCC 3 cut(s) 299, 720, 944
VspI ATTAAT 1 cut(s) 950
XagI CCTNNNNNAGG 1 cut(s) 567
XceI RCATGY 1 cut(s) 1321
XmiI GTMKAC 1 cut(s) 1005
XspI CTAG 3 cut(s) 71, 215, 564
ZrmI AGTACT 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.