transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G24140 AT3G24140 |
| fragaria_vesca | FvH4_1g23290 FvH4_4g15850 FvH4_4g15850 |
| malus_domestica | MD04G1006400.v1.1 |
| prunus_persica | Prupe.1G006600_v2.0.a1 Prupe.1G006600_v2.0.a1 Prupe.1G006600_v2.0.a1 |
| pyrus_communis | pycom04g00580 |
| rosa_chinensis | RchiOBHm_Chr4g0415421 |
| rosa_laevigata | RLG00000008071 |
| rosa_multiflora | Rmu_sc0002402.1_g000006 |
| rosa_roxburghii | Rroxscaffold_5G00359180 |
| rosa_rugosa | Rorug04G0134300 |
| rosa_samantha | Rh4AG194600 Rh4BG193300 Rh4CG205600 Rh4DG192300 |
| rosa_wichuraiana | Rw4G016570 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 407 |
| AccI | GTMKAC | 1 cut(s) | 1005 |
| AccIII | TCCGGA | 1 cut(s) | 347 |
| AciI | CCGC | 8 cut(s) | 290, 652, 682, 835, 902, 933, 939, 1311 |
| AclWI | GGATC | 2 cut(s) | 762, 983 |
| AcuI | CTGAAG | 3 cut(s) | 447, 797, 1278 |
| AfaI | GTAC | 3 cut(s) | 247, 744, 918 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 308, 569 |
| AgsI | TTSAA | 3 cut(s) | 240, 388, 554 |
| AjiI | CACGTC | 1 cut(s) | 277 |
| AjnI | CCWGG | 4 cut(s) | 40, 57, 730, 1120 |
| Alw21I | GWGCWC | 2 cut(s) | 209, 717 |
| Alw26I | GTCTC | 4 cut(s) | 114, 116, 1111, 1113 |
| AlwI | GGATC | 2 cut(s) | 762, 983 |
| Ama87I | CYCGRG | 1 cut(s) | 498 |
| Aor13HI | TCCGGA | 1 cut(s) | 347 |
| AoxI | GGCC | 1 cut(s) | 1137 |
| ApeKI | GCWGC | 9 cut(s) | 523, 526, 590, 923, 936, 962, 1126, 1145, 1162 |
| AseI | ATTAAT | 1 cut(s) | 950 |
| AspLEI | GCGC | 1 cut(s) | 1150 |
| AspS9I | GGNCC | 3 cut(s) | 299, 720, 944 |
| AsuHPI | GGTGA | 5 cut(s) | 164, 461, 916, 1081, 1180 |
| AsuII | TTCGAA | 1 cut(s) | 1011 |
| AvaI | CYCGRG | 1 cut(s) | 498 |
| AvaII | GGWCC | 3 cut(s) | 299, 720, 944 |
| Bbv12I | GWGCWC | 2 cut(s) | 209, 717 |
| BbvI | GCAGC | 9 cut(s) | 535, 538, 602, 935, 948, 949, 1132, 1138, 1174 |
| BccI | CCATC | 3 cut(s) | 183, 886, 1202 |
| BceAI | ACGGC | 3 cut(s) | 653, 1050, 1269 |
| BciT130I | CCWGG | 4 cut(s) | 42, 59, 732, 1122 |
| BclI | TGATCA | 1 cut(s) | 1095 |
| BcoDI | GTCTC | 4 cut(s) | 114, 116, 1111, 1113 |
| BfaI | CTAG | 3 cut(s) | 71, 215, 564 |
| BfmI | CTRYAG | 3 cut(s) | 588, 882, 912 |
| BglII | AGATCT | 1 cut(s) | 547 |
| BlpI | GCTNAGC | 1 cut(s) | 263 |
| BmcAI | AGTACT | 1 cut(s) | 247 |
| Bme1390I | CCNGG | 4 cut(s) | 42, 59, 732, 1122 |
| Bme18I | GGWCC | 3 cut(s) | 299, 720, 944 |
| BmeT110I | CYCGRG | 1 cut(s) | 498 |
| BmgBI | CACGTC | 1 cut(s) | 277 |
| BmgT120I | GGNCC | 3 cut(s) | 299, 720, 944 |
| BmiI | GGNNCC | 6 cut(s) | 301, 417, 585, 722, 778, 945 |
| BmrFI | CCNGG | 4 cut(s) | 42, 59, 732, 1122 |
| BmsI | GCATC | 5 cut(s) | 123, 270, 712, 897, 1078 |
| BpmI | CTGGAG | 2 cut(s) | 204, 515 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 263 |
| Bpu14I | TTCGAA | 1 cut(s) | 1011 |
| BpuEI | CTTGAG | 4 cut(s) | 356, 618, 912, 1172 |
| BsaBI | GATNNNNATC | 2 cut(s) | 78, 90 |
| BsaI | GGTCTC | 1 cut(s) | 1111 |
| BsaJI | CCNNGG | 3 cut(s) | 40, 669, 1121 |
| BsaWI | WCCGGW | 4 cut(s) | 347, 379, 580, 717 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 308, 569 |
| Bse1I | ACTGG | 1 cut(s) | 532 |
| Bse3DI | GCAATG | 1 cut(s) | 1140 |
| Bse8I | GATNNNNATC | 2 cut(s) | 78, 90 |
| BseAI | TCCGGA | 1 cut(s) | 347 |
| BseBI | CCWGG | 4 cut(s) | 42, 59, 732, 1122 |
| BseDI | CCNNGG | 3 cut(s) | 40, 669, 1121 |
| BseGI | GGATG | 1 cut(s) | 660 |
| BseJI | GATNNNNATC | 2 cut(s) | 78, 90 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 308, 569 |
| BseMI | GCAATG | 1 cut(s) | 1140 |
| BseMII | CTCAG | 3 cut(s) | 254, 1029, 1287 |
| BseNI | ACTGG | 1 cut(s) | 532 |
| BseRI | GAGGAG | 5 cut(s) | 26, 506, 582, 585, 789 |
| BseXI | GCAGC | 9 cut(s) | 535, 538, 602, 935, 948, 949, 1132, 1138, 1174 |
| BseYI | CCCAGC | 1 cut(s) | 224 |
| BsgI | GTGCAG | 1 cut(s) | 542 |
| BshFI | GGCC | 1 cut(s) | 1139 |
| BsiHKAI | GWGCWC | 2 cut(s) | 209, 717 |
| BsiHKCI | CYCGRG | 1 cut(s) | 498 |
| BsiSI | CCGG | 5 cut(s) | 348, 380, 581, 718, 959 |
| BslFI | GGGAC | 2 cut(s) | 706, 957 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 308, 569 |
| BsmAI | GTCTC | 4 cut(s) | 114, 116, 1111, 1113 |
| BsmFI | GGGAC | 2 cut(s) | 706, 957 |
| BsnI | GGCC | 1 cut(s) | 1139 |
| Bso31I | GGTCTC | 1 cut(s) | 1111 |
| BsoBI | CYCGRG | 1 cut(s) | 498 |
| Bsp119I | TTCGAA | 1 cut(s) | 1011 |
| Bsp1286I | GDGCHC | 2 cut(s) | 209, 717 |
| Bsp13I | TCCGGA | 1 cut(s) | 347 |
| Bsp1407I | TGTACA | 1 cut(s) | 742 |
| Bsp143I | GATC | 7 cut(s) | 73, 91, 481, 547, 754, 988, 1095 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 263 |
| BspACI | CCGC | 8 cut(s) | 290, 652, 682, 835, 902, 933, 939, 1311 |
| BspANI | GGCC | 1 cut(s) | 1139 |
| BspCNI | CTCAG | 3 cut(s) | 255, 1030, 1286 |
| BspEI | TCCGGA | 1 cut(s) | 347 |
| BspHI | TCATGA | 1 cut(s) | 82 |
| BspLI | GGNNCC | 6 cut(s) | 301, 417, 585, 722, 778, 945 |
| BspMAI | CTGCAG | 3 cut(s) | 592, 886, 916 |
| BspPI | GGATC | 2 cut(s) | 762, 983 |
| BspT104I | TTCGAA | 1 cut(s) | 1011 |
| BspTNI | GGTCTC | 1 cut(s) | 1111 |
| BsrDI | GCAATG | 1 cut(s) | 1140 |
| BsrGI | TGTACA | 1 cut(s) | 742 |
| BsrI | ACTGG | 1 cut(s) | 532 |
| BssECI | CCNNGG | 3 cut(s) | 40, 669, 1121 |
| BssMI | GATC | 7 cut(s) | 73, 91, 481, 547, 754, 988, 1095 |
| Bst2UI | CCWGG | 4 cut(s) | 42, 59, 732, 1122 |
| Bst4CI | ACNGT | 1 cut(s) | 1207 |
| Bst6I | CTCTTC | 1 cut(s) | 423 |
| BstAUI | TGTACA | 1 cut(s) | 742 |
| BstBI | TTCGAA | 1 cut(s) | 1011 |
| BstC8I | GCNNGC | 4 cut(s) | 588, 650, 912, 1315 |
| BstDEI | CTNAG | 4 cut(s) | 263, 847, 1038, 1273 |
| BstDSI | CCRYGG | 1 cut(s) | 669 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 567 |
| BstF5I | GGATG | 1 cut(s) | 660 |
| BstHHI | GCGC | 1 cut(s) | 1150 |
| BstKTI | GATC | 7 cut(s) | 76, 94, 484, 550, 757, 991, 1098 |
| BstMAI | GTCTC | 4 cut(s) | 114, 116, 1111, 1113 |
| BstMBI | GATC | 7 cut(s) | 73, 91, 481, 547, 754, 988, 1095 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 841, 920, 1145, 1310 |
| BstNI | CCWGG | 4 cut(s) | 42, 59, 732, 1122 |
| BstNSI | RCATGY | 1 cut(s) | 1321 |
| BstSCI | CCNGG | 4 cut(s) | 40, 57, 730, 1120 |
| BstSFI | CTRYAG | 3 cut(s) | 588, 882, 912 |
| BstV1I | GCAGC | 9 cut(s) | 535, 538, 602, 935, 948, 949, 1132, 1138, 1174 |
| BstX2I | RGATCY | 1 cut(s) | 547 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 539 |
| BstYI | RGATCY | 1 cut(s) | 547 |
| BsuRI | GGCC | 1 cut(s) | 1139 |
| BtgI | CCRYGG | 1 cut(s) | 669 |
| BtgZI | GCGATG | 3 cut(s) | 649, 905, 1106 |
| BtrI | CACGTC | 1 cut(s) | 277 |
| BtsCI | GGATG | 1 cut(s) | 660 |
| BtsIMutI | CAGTG | 1 cut(s) | 821 |
| Cac8I | GCNNGC | 4 cut(s) | 588, 650, 912, 1315 |
| CciI | TCATGA | 1 cut(s) | 82 |
| CfoI | GCGC | 1 cut(s) | 1150 |
| Cfr13I | GGNCC | 3 cut(s) | 299, 720, 944 |
| Csp6I | GTAC | 3 cut(s) | 246, 743, 917 |
| CviAII | CATG | 6 cut(s) | 83, 412, 727, 866, 1301, 1318 |
| CviQI | GTAC | 3 cut(s) | 246, 743, 917 |
| DdeI | CTNAG | 4 cut(s) | 263, 847, 1038, 1273 |
| DpnI | GATC | 7 cut(s) | 75, 93, 483, 549, 756, 990, 1097 |
| DpnII | GATC | 7 cut(s) | 73, 91, 481, 547, 754, 988, 1095 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 407 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 407 |
| Eam1104I | CTCTTC | 1 cut(s) | 423 |
| EarI | CTCTTC | 1 cut(s) | 423 |
| Eco31I | GGTCTC | 1 cut(s) | 1111 |
| Eco47I | GGWCC | 3 cut(s) | 299, 720, 944 |
| Eco57I | CTGAAG | 3 cut(s) | 447, 797, 1278 |
| Eco88I | CYCGRG | 1 cut(s) | 498 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 567 |
| EcoRII | CCWGG | 4 cut(s) | 40, 57, 730, 1120 |
| FaeI | CATG | 6 cut(s) | 86, 415, 730, 869, 1304, 1321 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 235, 267, 251, 283, 296, 328, 1037, 1069 |
| FaqI | GGGAC | 2 cut(s) | 706, 957 |
| FatI | CATG | 6 cut(s) | 82, 411, 726, 865, 1300, 1317 |
| FauI | CCCGC | 1 cut(s) | 932 |
| FauNDI | CATATG | 1 cut(s) | 739 |
| FbaI | TGATCA | 1 cut(s) | 1095 |
| FblI | GTMKAC | 1 cut(s) | 1005 |
| FokI | GGATG | 1 cut(s) | 667 |
| FspBI | CTAG | 3 cut(s) | 71, 215, 564 |
| GlaI | GCGC | 1 cut(s) | 1149 |
| GsaI | CCCAGC | 1 cut(s) | 228 |
| GsuI | CTGGAG | 2 cut(s) | 204, 515 |
| HaeIII | GGCC | 1 cut(s) | 1139 |
| HapII | CCGG | 5 cut(s) | 348, 380, 581, 718, 959 |
| HhaI | GCGC | 1 cut(s) | 1150 |
| Hin1II | CATG | 6 cut(s) | 86, 415, 730, 869, 1304, 1321 |
| Hin6I | GCGC | 1 cut(s) | 1148 |
| HinP1I | GCGC | 1 cut(s) | 1148 |
| HincII | GTYRAC | 2 cut(s) | 355, 1006 |
| HindII | GTYRAC | 2 cut(s) | 355, 1006 |
| HindIII | AAGCTT | 1 cut(s) | 759 |
| HinfI | GANTC | 6 cut(s) | 124, 631, 824, 878, 979, 1241 |
| HpaII | CCGG | 5 cut(s) | 348, 380, 581, 718, 959 |
| HphI | GGTGA | 5 cut(s) | 164, 461, 916, 1081, 1180 |
| Hpy166II | GTNNAC | 4 cut(s) | 355, 364, 1006, 1251 |
| Hpy188I | TCNGA | 1 cut(s) | 334 |
| Hpy188III | TCNNGA | 7 cut(s) | 83, 348, 485, 551, 635, 1025, 1099 |
| Hpy8I | GTNNAC | 4 cut(s) | 355, 364, 1006, 1251 |
| Hpy99I | CGWCG | 3 cut(s) | 122, 278, 1007 |
| HpyAV | CCTTC | 2 cut(s) | 449, 834 |
| HpyCH4III | ACNGT | 1 cut(s) | 1207 |
| HpyCH4IV | ACGT | 1 cut(s) | 276 |
| HpyCH4V | TGCA | 7 cut(s) | 283, 523, 590, 884, 914, 1162, 1304 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 841, 920, 1145, 1310 |
| HpyF3I | CTNAG | 4 cut(s) | 263, 847, 1038, 1273 |
| HpySE526I | ACGT | 1 cut(s) | 276 |
| Hsp92II | CATG | 6 cut(s) | 86, 415, 730, 869, 1304, 1321 |
| HspAI | GCGC | 1 cut(s) | 1148 |
| Kpn2I | TCCGGA | 1 cut(s) | 347 |
| Ksp22I | TGATCA | 1 cut(s) | 1095 |
| Kzo9I | GATC | 7 cut(s) | 73, 91, 481, 547, 754, 988, 1095 |
| LmnI | GCTCC | 7 cut(s) | 223, 534, 583, 720, 776, 862, 887 |
| Lsp1109I | GCAGC | 9 cut(s) | 535, 538, 602, 935, 948, 949, 1132, 1138, 1174 |
| LweI | GCATC | 5 cut(s) | 123, 270, 712, 897, 1078 |
| MaeI | CTAG | 3 cut(s) | 71, 215, 564 |
| MaeII | ACGT | 1 cut(s) | 276 |
| MaeIII | GTNAC | 1 cut(s) | 44 |
| MalI | GATC | 7 cut(s) | 75, 93, 483, 549, 756, 990, 1097 |
| MboI | GATC | 7 cut(s) | 73, 91, 481, 547, 754, 988, 1095 |
| MflI | RGATCY | 1 cut(s) | 547 |
| MhlI | GDGCHC | 2 cut(s) | 209, 717 |
| MluCI | AATT | 4 cut(s) | 154, 514, 797, 967 |
| MlyI | GAGTC | 2 cut(s) | 118, 625 |
| MroI | TCCGGA | 1 cut(s) | 347 |
| MseI | TTAA | 6 cut(s) | 51, 314, 950, 1134, 1167, 1221 |
| MslI | CAYNNNNRTG | 4 cut(s) | 81, 84, 668, 708 |
| MspA1I | CMGCKG | 3 cut(s) | 224, 652, 939 |
| MspI | CCGG | 5 cut(s) | 348, 380, 581, 718, 959 |
| MspR9I | CCNGG | 4 cut(s) | 42, 59, 732, 1122 |
| MvaI | CCWGG | 4 cut(s) | 42, 59, 732, 1122 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 841, 920, 1145, 1310 |
| NdeI | CATATG | 1 cut(s) | 739 |
| NdeII | GATC | 7 cut(s) | 73, 91, 481, 547, 754, 988, 1095 |
| NlaIII | CATG | 6 cut(s) | 86, 415, 730, 869, 1304, 1321 |
| NlaIV | GGNNCC | 6 cut(s) | 301, 417, 585, 722, 778, 945 |
| NmeAIII | GCCGAG | 1 cut(s) | 5 |
| NspI | RCATGY | 1 cut(s) | 1321 |
| NspV | TTCGAA | 1 cut(s) | 1011 |
| PagI | TCATGA | 1 cut(s) | 82 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 396, 1008 |
| PfeI | GAWTC | 4 cut(s) | 824, 878, 979, 1241 |
| PflFI | GACNNNGTC | 1 cut(s) | 466 |
| PleI | GAGTC | 2 cut(s) | 118, 625 |
| PpsI | GAGTC | 2 cut(s) | 118, 625 |
| PshBI | ATTAAT | 1 cut(s) | 950 |
| Psp6I | CCWGG | 4 cut(s) | 40, 57, 730, 1120 |
| PspFI | CCCAGC | 1 cut(s) | 224 |
| PspGI | CCWGG | 4 cut(s) | 40, 57, 730, 1120 |
| PspN4I | GGNNCC | 6 cut(s) | 301, 417, 585, 722, 778, 945 |
| PspPI | GGNCC | 3 cut(s) | 299, 720, 944 |
| PstI | CTGCAG | 3 cut(s) | 592, 886, 916 |
| PsuI | RGATCY | 1 cut(s) | 547 |
| PsyI | GACNNNGTC | 1 cut(s) | 466 |
| PvuII | CAGCTG | 1 cut(s) | 224 |
| RsaI | GTAC | 3 cut(s) | 247, 744, 918 |
| RsaNI | GTAC | 3 cut(s) | 246, 743, 917 |
| RseI | CAYNNNNRTG | 4 cut(s) | 81, 84, 668, 708 |
| SalI | GTCGAC | 1 cut(s) | 1004 |
| SaqAI | TTAA | 6 cut(s) | 51, 314, 950, 1134, 1167, 1221 |
| Sau3AI | GATC | 7 cut(s) | 73, 91, 481, 547, 754, 988, 1095 |
| Sau96I | GGNCC | 3 cut(s) | 299, 720, 944 |
| ScaI | AGTACT | 1 cut(s) | 247 |
| SchI | GAGTC | 2 cut(s) | 118, 625 |
| ScrFI | CCNGG | 4 cut(s) | 42, 59, 732, 1122 |
| SduI | GDGCHC | 2 cut(s) | 209, 717 |
| SfaNI | GCATC | 5 cut(s) | 123, 270, 712, 897, 1078 |
| SfcI | CTRYAG | 3 cut(s) | 588, 882, 912 |
| SfuI | TTCGAA | 1 cut(s) | 1011 |
| SinI | GGWCC | 3 cut(s) | 299, 720, 944 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 81, 84, 668, 708 |
| SmlI | CTYRAG | 4 cut(s) | 371, 633, 927, 1151 |
| SmoI | CTYRAG | 4 cut(s) | 371, 633, 927, 1151 |
| Sse9I | AATT | 4 cut(s) | 154, 514, 797, 967 |
| SsiI | CCGC | 8 cut(s) | 290, 652, 682, 835, 902, 933, 939, 1311 |
| SspMI | CTAG | 3 cut(s) | 71, 215, 564 |
| StyD4I | CCNGG | 4 cut(s) | 40, 57, 730, 1120 |
| TaaI | ACNGT | 1 cut(s) | 1207 |
| TaiI | ACGT | 1 cut(s) | 279 |
| TaqI | TCGA | 8 cut(s) | 117, 399, 642, 1005, 1011, 1024, 1197, 1244 |
| TasI | AATT | 4 cut(s) | 154, 514, 797, 967 |
| TatI | WGTACW | 3 cut(s) | 245, 742, 916 |
| TauI | GCSGC | 1 cut(s) | 936 |
| TfiI | GAWTC | 4 cut(s) | 824, 878, 979, 1241 |
| Tru1I | TTAA | 6 cut(s) | 51, 314, 950, 1134, 1167, 1221 |
| Tru9I | TTAA | 6 cut(s) | 51, 314, 950, 1134, 1167, 1221 |
| TscAI | CASTG | 1 cut(s) | 821 |
| TseI | GCWGC | 9 cut(s) | 523, 526, 590, 923, 936, 962, 1126, 1145, 1162 |
| TspDTI | ATGAA | 5 cut(s) | 102, 119, 179, 710, 1289 |
| TspGWI | ACGGA | 1 cut(s) | 508 |
| TspRI | CASTG | 1 cut(s) | 821 |
| Tth111I | GACNNNGTC | 1 cut(s) | 466 |
| VpaK11BI | GGWCC | 3 cut(s) | 299, 720, 944 |
| VspI | ATTAAT | 1 cut(s) | 950 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 567 |
| XceI | RCATGY | 1 cut(s) | 1321 |
| XmiI | GTMKAC | 1 cut(s) | 1005 |
| XspI | CTAG | 3 cut(s) | 71, 215, 564 |
| ZrmI | AGTACT | 1 cut(s) | 247 |